Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Forward (+)

7076185 .. 7077974

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGGGAAGTAAAGTGGAGAATGGAAGCTCAAGCGAGGGTCGGCCTCCGAACCCTCTTTCGACCGCTGCGGCCTACTGGCAGTGTGGCTTTGGCCCCGCCGATGGCGTTCCAGTGCCGTGCAAGAAATCACTCGTTCGACACCCGTCTCTTATGAAGACGAAAACAAAAGAGATCAAAGTTGAGCCGGGAGTTCAAGCAGAGGACTTTGAATCTAATTTCATTCCAATTGTCCGCTCCGGAGCATGGGCTGACATTGGGTCTCGTCCAAACATGGAAGATGTGTATGTCTGCGTGGACAATTTTATTGACGATTATGGGCTCAAGGATCATACCGATGGCCCAAGCGCCTTCTATGGGGTGTTTGATGGACATGGAGGAAAGCATGCGGCTGATTTTGCTTCATCCCATCTGCCGAAGTTCATTTTGGAGAATGAAGACTTCCCTACAGATATTGAACGGGTTGTCACTTCAGCATTTCTGCATACTGACACTGCCTTTGAGGAAGCTTGCACCTTGGATGCCAAACTTGCTTCTGGTACCACTGCATTGACAGCTCTTCTCATTGGAAGGTTGTTGGTGGTTGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGCCGTGGAAAAGCAATTGAAATGTCAAGAGATCGAACAAACCAATTTGCAGCAAAGAGAAGCAACGGATCGAGGCATCTGGAGGACATGTGTATGATGGTTACCTTAATGGGCAACTTAACGTTGCTCGTGCCTTGGGAGACTGGCATATGGAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

260

Amino Acids

28.14

Weight (kDa)

5.52

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	6 cut(s)	66, 71, 99, 235, 389, 619
AclI	AACGTT	1 cut(s)	740
AclWI	GGATC	2 cut(s)	336, 694
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	3 cut(s)	104, 246, 357
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	4 cut(s)	197, 212, 458, 638
AhdI	GACNNNNNGTC	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	3 cut(s)	30, 509, 557
AluI	AGCT	3 cut(s)	30, 509, 557
Alw26I	GTCTC	3 cut(s)	153, 267, 752
AlwI	GGATC	2 cut(s)	336, 694
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	4 cut(s)	44, 72, 94, 340
ApeKI	GCWGC	2 cut(s)	68, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp718I	GGTACC	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	95, 341
AsuC2I	CCSGG	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	746
BbsI	GAAGAC	2 cut(s)	164, 444
BbvI	GCAGC	2 cut(s)	55, 680
BccI	CCATC	5 cut(s)	98, 332, 362, 417, 709
BceAI	ACGGC	2 cut(s)	103, 606
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	3 cut(s)	153, 267, 752
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	5 cut(s)	69, 72, 390, 619, 669
BlsI	GCNGC	5 cut(s)	70, 73, 391, 620, 670
Bme1390I	CCNGG	1 cut(s)	189
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	95, 341
BmiI	GGNNCC	2 cut(s)	97, 541
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	511, 703
BoxI	GACNNNNGTC	1 cut(s)	145
BpiI	GAAGAC	2 cut(s)	164, 444
BpmI	CTGGAG	2 cut(s)	615, 719
BpuEI	CTTGAG	2 cut(s)	16, 308
BpuMI	CCSGG	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	516, 622, 752
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 246, 357
Bse1I	ACTGG	3 cut(s)	83, 113, 766
BseAI	TCCGGA	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	516, 622, 752
BseGI	GGATG	2 cut(s)	404, 526
BseLI	CCNNNNNNNGG	3 cut(s)	104, 246, 357
BseNI	ACTGG	3 cut(s)	83, 113, 766
BseXI	GCAGC	2 cut(s)	55, 680
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	46, 74, 96, 342
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	188, 240
BslI	CCNNNNNNNGG	3 cut(s)	104, 246, 357
BsmAI	GTCTC	3 cut(s)	153, 267, 752
BsmBI	CGTCTC	1 cut(s)	153
BsnI	GGCC	4 cut(s)	46, 74, 96, 342
Bso31I	GGTCTC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	4 cut(s)	174, 328, 649, 686
BspACI	CCGC	6 cut(s)	66, 71, 99, 235, 389, 619
BspANI	GGCC	4 cut(s)	46, 74, 96, 342
BspEI	TCCGGA	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	97, 541
BspPI	GGATC	2 cut(s)	336, 694
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	83, 113, 766
BssECI	CCNNGG	3 cut(s)	516, 622, 752
BssMI	GATC	4 cut(s)	174, 328, 649, 686
BssSI	CACGAG	1 cut(s)	746
BssT1I	CCWWGG	2 cut(s)	516, 752
Bst2BI	CACGAG	1 cut(s)	746
Bst6I	CTCTTC	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	387, 511
BstDSI	CCRYGG	1 cut(s)	622
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	2 cut(s)	404, 526
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	4 cut(s)	177, 331, 652, 689
BstMAI	GTCTC	3 cut(s)	153, 267, 752
BstMBI	GATC	4 cut(s)	174, 328, 649, 686
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 530, 554
BstNSI	RCATGY	2 cut(s)	389, 709
BstPAI	GACNNNNGTC	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	55, 680
BstV2I	GAAGAC	2 cut(s)	164, 444
BsuRI	GGCC	4 cut(s)	46, 74, 96, 342
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	2 cut(s)	404, 526
BtsI	GCAGTG	4 cut(s)	89, 492, 543, 615
BtsIMutI	CAGTG	5 cut(s)	89, 120, 492, 543, 615
Cac8I	GCNNGC	2 cut(s)	387, 511
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	95, 341
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	5 cut(s)	246, 274, 374, 386, 706
CviQI	GTAC	1 cut(s)	540
DpnI	GATC	4 cut(s)	176, 330, 651, 688
DpnII	GATC	4 cut(s)	174, 328, 649, 686
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	564
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	516, 752
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	516, 752
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	516, 752
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	5 cut(s)	249, 277, 377, 389, 709
FatI	CATG	5 cut(s)	245, 273, 373, 385, 705
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	767
Fnu4HI	GCNGC	5 cut(s)	69, 72, 390, 619, 669
FokI	GGATG	2 cut(s)	391, 533
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	5 cut(s)	69, 72, 390, 619, 669
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	5 cut(s)	69, 72, 390, 619, 669
GsuI	CTGGAG	2 cut(s)	615, 719
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	4 cut(s)	46, 74, 96, 342
HapII	CCGG	2 cut(s)	188, 240
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	249, 277, 377, 389, 709
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	2 cut(s)	188, 240
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	3 cut(s)	240, 645, 698
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	361, 564, 766
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	6 cut(s)	123, 484, 513, 548, 587, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 530, 554
HpySE526I	ACGT	1 cut(s)	740
Hsp92II	CATG	5 cut(s)	249, 277, 377, 389, 709
HspAI	GCGC	1 cut(s)	348
Kpn2I	TCCGGA	1 cut(s)	239
KpnI	GGTACC	1 cut(s)	543
Kzo9I	GATC	4 cut(s)	174, 328, 649, 686
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	242, 242
LpnPI	CCDG	8 cut(s)	64, 126, 201, 253, 522, 579, 683, 747
Lsp1109I	GCAGC	2 cut(s)	55, 680
LweI	GCATC	2 cut(s)	511, 703
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	2 cut(s)	466, 718
MalI	GATC	4 cut(s)	176, 330, 651, 688
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	4 cut(s)	174, 328, 649, 686
MboII	GAAGA	4 cut(s)	169, 290, 449, 551
MfeI	CAATTG	2 cut(s)	228, 633
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	5 cut(s)	217, 228, 301, 633, 662
MnlI	CCTC	8 cut(s)	31, 57, 66, 196, 371, 496, 684, 694
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	2 cut(s)	725, 737
MslI	CAYNNNNRTG	2 cut(s)	336, 710
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	188, 240
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	228, 633
MwoI	GCNNNNNNNGC	3 cut(s)	398, 530, 554
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	767
NdeII	GATC	4 cut(s)	174, 328, 649, 686
NlaIII	CATG	5 cut(s)	249, 277, 377, 389, 709
NlaIV	GGNNCC	2 cut(s)	97, 541
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	2 cut(s)	389, 709
PaeI	GCATGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	70, 73, 391, 620, 670
PscI	ACATGT	1 cut(s)	705
PshAI	GACNNNNGTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	740
PspEI	GGTNACC	1 cut(s)	718
PspN4I	GGNNCC	2 cut(s)	97, 541
PspPI	GGNCC	2 cut(s)	95, 341
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	2 cut(s)	336, 710
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	2 cut(s)	725, 737
SatI	GCNGC	5 cut(s)	69, 72, 390, 619, 669
Sau3AI	GATC	4 cut(s)	174, 328, 649, 686
Sau96I	GGNCC	2 cut(s)	95, 341
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	32, 511, 518, 559, 575, 725, 743
SfaNI	GCATC	2 cut(s)	511, 703
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	336, 710
SmlI	CTYRAG	2 cut(s)	31, 323
SmoI	CTYRAG	2 cut(s)	31, 323
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	5 cut(s)	217, 228, 301, 633, 662
SsiI	CCGC	6 cut(s)	66, 71, 99, 235, 389, 619
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	2 cut(s)	516, 752
TaiI	ACGT	1 cut(s)	743
TaqI	TCGA	5 cut(s)	62, 139, 604, 652, 689
TasI	AATT	5 cut(s)	217, 228, 301, 633, 662
TauI	GCSGC	3 cut(s)	74, 392, 621
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	725, 737
Tru9I	TTAA	2 cut(s)	725, 737
TscAI	CASTG	5 cut(s)	89, 120, 499, 550, 615
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	68, 668
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	5 cut(s)	170, 211, 393, 412, 450
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	5 cut(s)	89, 120, 499, 550, 615
XceI	RCATGY	2 cut(s)	389, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.