Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8054612.1

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Forward (+)

55 .. 563

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8054612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 404 bp

atgaggacgaaggcgtcagacgtcactgttgaactgggagtagaagaagagaagtatgaatcgaagttcattccaattgtgcgctctggagcatggactgacattggttctcgctcaaacatggaagatgtttatgtctgtgtggacaattttatgcatgactatggtctcaagaatttcactgatggccccagtggcttctacggggtctttgatggacatggaggaaagcatgccgctgactttgctagctctaatttgccaaagttcatttttgaggatgaagacttccctggtgatattcaaaaggttgtaagttcagcatttctgcaaactgacactgcctttcaagaagcctgcactttggatgctacccttgcttctggtaccactgcattgacagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

135

Amino Acids

14.7

Weight (kDa)

4.38

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AatII	GACGTC	1 cut(s)	24
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AciI	CCGC	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	175
AcyI	GRCGYC	2 cut(s)	14, 21
AfaI	GTAC	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	32, 305, 350
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	175
Asp718I	GGTACC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	308
AsuNHI	GCTAGC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	291
BccI	CCATC	2 cut(s)	179, 209
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	249
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 388
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	2 cut(s)	44, 186
BmsI	GCATC	1 cut(s)	358
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	2 cut(s)	44, 186
BoxI	GACNNNNGTC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	2 cut(s)	14, 21
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	39, 192
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	2 cut(s)	286, 373
BseNI	ACTGG	2 cut(s)	39, 192
BsgI	GTGCAG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	173
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	190, 388
BspOI	GCTAGC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	39, 192
BssECI	CCNNGG	1 cut(s)	292
BssNI	GRCGYC	2 cut(s)	14, 21
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	2 cut(s)	14, 21
BstC8I	GCNNGC	3 cut(s)	234, 250, 358
BstF5I	GGATG	2 cut(s)	286, 373
BstHHI	GCGC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 245, 377, 401
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	236
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	286, 373
BtsI	GCAGTG	2 cut(s)	339, 390
BtsIMutI	CAGTG	5 cut(s)	24, 180, 199, 339, 390
Cac8I	GCNNGC	3 cut(s)	234, 250, 358
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	5 cut(s)	93, 121, 158, 221, 233
CviJI	RGCY	4 cut(s)	189, 198, 252, 356
CviKI_1	RGCY	4 cut(s)	189, 198, 252, 356
CviQI	GTAC	1 cut(s)	387
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	5 cut(s)	96, 124, 161, 224, 236
FaiI	YATR	9 cut(s)	57, 94, 122, 135, 155, 159, 165, 222, 234
FatI	CATG	5 cut(s)	92, 120, 157, 220, 232
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	293, 380
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	189
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	2 cut(s)	14, 21
Hin1II	CATG	5 cut(s)	96, 124, 161, 224, 236
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	3 cut(s)	87, 172, 350
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	157, 331, 360, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 245, 377, 401
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	2 cut(s)	14, 21
Hsp92II	CATG	5 cut(s)	96, 124, 161, 224, 236
HspAI	GCGC	1 cut(s)	82
KpnI	GGTACC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	20, 72, 205, 279, 306, 369, 370
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	22
MboII	GAAGA	4 cut(s)	56, 59, 137, 296
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	4 cut(s)	75, 148, 175, 256
MnlI	CCTC	2 cut(s)	218, 271
Mph1103I	ATGCAT	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	195, 245, 377, 401
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	5 cut(s)	96, 124, 161, 224, 236
NlaIV	GGNNCC	2 cut(s)	190, 388
NmuCI	GTSAC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	190, 388
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	3 cut(s)	24, 254, 312
SfaNI	GCATC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	4 cut(s)	75, 148, 175, 256
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	75, 148, 175, 256
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	5 cut(s)	31, 187, 199, 346, 397
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	58, 72, 259, 297
TspRI	CASTG	5 cut(s)	31, 187, 199, 346, 397
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.