Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Forward (+)

10170149 .. 10172215

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGGGAAGTAAAGTGGAGAATGGAAGCTCAAGTGAGGGTCGGCCTCCGAACCCTCTTTCGACGTCCGCGTACTGGCAGTGTGGCTTCAGCCGCGCCGATGGCGTTCCGGTGCCGTGCAAGAAATCGCTCGTTCGACACCCATCTCTTATGAAGACGAAAACAAAAGAGATCAACGTTGAACCAGGAGTTCAAGCAAAGAACTTTGAATCTAAGTTCATTCCAATTGTCCGCTCTGGAGCATGGGATGACATTGGGTCTCGTCCAAACATGGAAGATGTATATGTCTGCGTTGACAATTTTGTGAACGATTACGGGCTCAAGAATTGTAACAATGGTCCAAATGCCTTCTATGGGGTGTTTGATGGACATGGAGGAAAGCATGCTGCTGATTTTGCTTCCTCTCATCTGCCAAAGTTCATTTTTGAGGATGAAGACTTTCCTACAGATATTGAACGGGTCGTCACTTCAGCATTTCTGCATACTGACACTGCCTTTGAGGAAGCTTGCATCTTGGATGCCAAGCTTGCTTCTGGTACCACTGCATTGACAGCTCTTCTAATGGGAAGGTTGTTGGTGGTAGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGCCGTGGCAAAGCAATTGAAATGTCAAGAGATCACAAACCGATTTGTAGCAAAGAGAAACAACGTATCGAAGCATCTGGAGGATACGTGTATGATGGTTACCTTAATGGGCAGCTTAACATTGCTCGTGCATTGGGAGATTGGCATGTGGAAGGGATGAAGGGCAGGGAGGGTGGGCCACTGAGTGCAGAGCCGGAACTTATGACAGCAAAACTGACAGAGGAGGATGAGTTCCTTATCATTGGCTGTGATGGGATCTGGGATCCCGGTGTTCAGGAGTCAAAATGCTGTGGATTTTGCTCGTCGGAGGCTTCAGGAGCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

314

Amino Acids

33.94

Weight (kDa)

5.2

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	536
AccB1I	GGYRCC	2 cut(s)	112, 536
AccBSI	CCGCTC	1 cut(s)	234
AccII	CGCG	2 cut(s)	71, 96
AciI	CCGC	4 cut(s)	69, 94, 232, 616
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	3 cut(s)	872, 878, 885
AcuI	CTGAAG	3 cut(s)	73, 453, 912
AcyI	GRCGYC	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	2 cut(s)	74, 538
AfiI	CCNNNNNNNGG	2 cut(s)	75, 354
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	5 cut(s)	182, 194, 209, 455, 635
AhdI	GACNNNNNGTC	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	184
AloI	GAACNNNNNNTCC	2 cut(s)	830, 862
AluBI	AGCT	5 cut(s)	30, 506, 526, 554, 730
AluI	AGCT	5 cut(s)	30, 506, 526, 554, 730
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	3 cut(s)	872, 878, 885
AoxI	GGCC	2 cut(s)	44, 791
ApeKI	GCWGC	2 cut(s)	386, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	338, 791
AsuC2I	CCSGG	1 cut(s)	882
AvaII	GGWCC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	877
BanI	GGYRCC	2 cut(s)	112, 536
BanII	GRGCYC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	741
BbsI	GAAGAC	2 cut(s)	161, 441
Bbv12I	GWGCWC	1 cut(s)	937
BbvI	GCAGC	2 cut(s)	373, 739
BccI	CCATC	5 cut(s)	95, 151, 359, 704, 860
BceAI	ACGGC	2 cut(s)	100, 603
BciT130I	CCWGG	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	692
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	692
BglI	GCCNNNNNGGC	1 cut(s)	621
BisI	GCNGC	4 cut(s)	94, 387, 616, 728
BlsI	GCNGC	4 cut(s)	95, 388, 617, 729
Bme1390I	CCNGG	2 cut(s)	186, 882
Bme18I	GGWCC	1 cut(s)	338
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	338, 791
BmiI	GGNNCC	3 cut(s)	114, 538, 879
BmrFI	CCNGG	2 cut(s)	186, 882
BmsI	GCATC	3 cut(s)	508, 519, 698
BpiI	GAAGAC	2 cut(s)	161, 441
BpmI	CTGGAG	3 cut(s)	258, 612, 714
BpuEI	CTTGAG	2 cut(s)	16, 305
BpuMI	CCSGG	1 cut(s)	882
BsaAI	YACGTR	1 cut(s)	703
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	619
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	4 cut(s)	687, 717, 830, 860
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 354
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	5 cut(s)	253, 436, 523, 777, 847
BseLI	CCNNNNNNNGG	2 cut(s)	75, 354
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	2 cut(s)	373, 739
BsgI	GTGCAG	1 cut(s)	822
Bsh1236I	CGCG	2 cut(s)	71, 96
BshFI	GGCC	2 cut(s)	46, 793
BshNI	GGYRCC	2 cut(s)	112, 536
BsiHKAI	GWGCWC	1 cut(s)	937
BsiSI	CCGG	3 cut(s)	110, 809, 882
BslI	CCNNNNNNNGG	2 cut(s)	75, 354
BsmAI	GTCTC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	46, 793
Bso31I	GGTCTC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	321, 937
Bsp143I	GATC	4 cut(s)	171, 646, 870, 877
BspACI	CCGC	4 cut(s)	69, 94, 232, 616
BspANI	GGCC	2 cut(s)	46, 793
BspCNI	CTCAG	1 cut(s)	789
BspFNI	CGCG	2 cut(s)	71, 96
BspLI	GGNNCC	3 cut(s)	114, 538, 879
BspPI	GGATC	3 cut(s)	872, 878, 885
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	2 cut(s)	112, 536
BspTNI	GGTCTC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	4 cut(s)	171, 646, 870, 877
BssNI	GRCGYC	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	384, 508, 528
BstDEI	CTNAG	2 cut(s)	213, 797
BstDSI	CCRYGG	1 cut(s)	619
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	5 cut(s)	253, 436, 523, 777, 847
BstFNI	CGCG	2 cut(s)	71, 96
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	4 cut(s)	174, 649, 873, 880
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	4 cut(s)	171, 646, 870, 877
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 102, 395, 527, 551, 621, 932
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	2 cut(s)	386, 764
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	184, 880
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	2 cut(s)	71, 96
BstV1I	GCAGC	2 cut(s)	373, 739
BstV2I	GAAGAC	2 cut(s)	161, 441
BstX2I	RGATCY	2 cut(s)	870, 877
BstYI	RGATCY	2 cut(s)	870, 877
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	2 cut(s)	46, 793
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	5 cut(s)	253, 436, 523, 777, 847
BtsI	GCAGTG	4 cut(s)	86, 489, 540, 612
BtsIMutI	CAGTG	5 cut(s)	86, 489, 540, 612, 794
Cac8I	GCNNGC	3 cut(s)	384, 508, 528
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	338, 791
Csp6I	GTAC	2 cut(s)	73, 537
CviAII	CATG	5 cut(s)	243, 271, 371, 383, 761
CviQI	GTAC	2 cut(s)	73, 537
DdeI	CTNAG	2 cut(s)	213, 797
DpnI	GATC	4 cut(s)	173, 648, 872, 879
DpnII	GATC	4 cut(s)	171, 646, 870, 877
DraIII	CACNNNGTG	1 cut(s)	800
DriI	GACNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	561
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	3 cut(s)	73, 453, 912
Eco91I	GGTNACC	1 cut(s)	713
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	5 cut(s)	246, 274, 374, 386, 764
FatI	CATG	5 cut(s)	242, 270, 370, 382, 760
Fnu4HI	GCNGC	4 cut(s)	94, 387, 616, 728
FokI	GGATG	5 cut(s)	260, 443, 530, 784, 854
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	94, 387, 616, 728
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	4 cut(s)	94, 387, 616, 728
GsuI	CTGGAG	3 cut(s)	258, 612, 714
HaeIII	GGCC	2 cut(s)	46, 793
HapII	CCGG	3 cut(s)	110, 809, 882
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	5 cut(s)	246, 274, 374, 386, 764
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	2 cut(s)	504, 524
HinfI	GANTC	2 cut(s)	209, 893
HpaII	CCGG	3 cut(s)	110, 809, 882
Hpy166II	GTNNAC	2 cut(s)	295, 307
Hpy188I	TCNGA	2 cut(s)	51, 922
Hpy188III	TCNNGA	6 cut(s)	237, 322, 642, 693, 890, 930
Hpy8I	GTNNAC	2 cut(s)	295, 307
Hpy99I	CGWCG	2 cut(s)	67, 922
HpyAV	CCTTC	4 cut(s)	358, 561, 761, 769
HpyCH4IV	ACGT	4 cut(s)	65, 177, 679, 702
HpyCH4V	TGCA	6 cut(s)	120, 481, 510, 545, 746, 803
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 102, 395, 527, 551, 621, 932
HpyF3I	CTNAG	2 cut(s)	213, 797
HpySE526I	ACGT	4 cut(s)	65, 177, 679, 702
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	5 cut(s)	246, 274, 374, 386, 764
HspAI	GCGC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	171, 646, 870, 877
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	2 cut(s)	239, 932
Lsp1109I	GCAGC	2 cut(s)	373, 739
LweI	GCATC	3 cut(s)	508, 519, 698
MaeII	ACGT	4 cut(s)	65, 177, 679, 702
MaeIII	GTNAC	3 cut(s)	329, 463, 713
MalI	GATC	4 cut(s)	173, 648, 872, 879
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	4 cut(s)	171, 646, 870, 877
MboII	GAAGA	4 cut(s)	166, 287, 446, 548
MfeI	CAATTG	2 cut(s)	225, 630
MflI	RGATCY	2 cut(s)	870, 877
MhlI	GDGCHC	2 cut(s)	321, 937
MluCI	AATT	4 cut(s)	225, 298, 325, 630
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	1 cut(s)	900
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	2 cut(s)	720, 732
MspI	CCGG	3 cut(s)	110, 809, 882
MspR9I	CCNGG	2 cut(s)	186, 882
MunI	CAATTG	2 cut(s)	225, 630
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	71, 96
MwoI	GCNNNNNNNGC	7 cut(s)	93, 102, 395, 527, 551, 621, 932
NciI	CCSGG	1 cut(s)	882
NdeII	GATC	4 cut(s)	171, 646, 870, 877
NlaIII	CATG	5 cut(s)	246, 274, 374, 386, 764
NlaIV	GGNNCC	3 cut(s)	114, 538, 879
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	2 cut(s)	386, 764
PaeI	GCATGC	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	95, 388, 617, 729
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
Ppu21I	YACGTR	1 cut(s)	703
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	184
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	114, 538, 879
PspPI	GGNCC	2 cut(s)	338, 791
PsuI	RGATCY	2 cut(s)	870, 877
RsaI	GTAC	2 cut(s)	74, 538
RsaNI	GTAC	2 cut(s)	73, 537
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	720, 732
SatI	GCNGC	4 cut(s)	94, 387, 616, 728
Sau3AI	GATC	4 cut(s)	171, 646, 870, 877
Sau96I	GGNCC	2 cut(s)	338, 791
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	2 cut(s)	186, 882
SduI	GDGCHC	2 cut(s)	321, 937
SfaNI	GCATC	3 cut(s)	508, 519, 698
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	31, 320
SmoI	CTYRAG	2 cut(s)	31, 320
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	4 cut(s)	225, 298, 325, 630
SsiI	CCGC	4 cut(s)	69, 94, 232, 616
StyD4I	CCNGG	2 cut(s)	184, 880
TaiI	ACGT	4 cut(s)	68, 180, 682, 705
TaqI	TCGA	4 cut(s)	62, 136, 601, 684
TasI	AATT	4 cut(s)	225, 298, 325, 630
TauI	GCSGC	2 cut(s)	96, 618
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	720, 732
Tru9I	TTAA	2 cut(s)	720, 732
TscAI	CASTG	5 cut(s)	86, 496, 547, 612, 801
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	386, 727
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	5 cut(s)	167, 208, 409, 447, 788
TspRI	CASTG	5 cut(s)	86, 496, 547, 612, 801
VpaK11BI	GGWCC	1 cut(s)	338
XceI	RCATGY	2 cut(s)	386, 764
XmnI	GAANNNNTTC	1 cut(s)	438
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.