Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000397.1

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Reverse (-)

192860 .. 194560

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000397.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgaggacgaaggcgtcagacgtcactgttgaactgggagtagaagaagagaagtatgaatcgaagttcattccaattgtgcgctctggagcatggactgacattggttctcgctcaaacatggaagatgtttatgtctgtgtggacaattttatgcatgactatggtctcaagaatttcactgatggccccagtggcttctacggggtctttgatggacatggaggaaagcatgccgctgactttgctagctctaatttgccaaagttcatttttgaggatgaagacttccctggtgatattcaaaaggttgtaagttcagcatttctgcaaactgacactgcctttcaagaagcctgcactttggatgctacccttgcttctggtaccactgcattgacagcgcttcttgttggaaggctgttggtggtagctaatgctggagactgtcgagcagtgctttgccgccgtggaaaagcaattgcgatgtcaagcgatcacaaacctatatgcagcaaagagatcaaacgcgtcgaggcatgtggaggatcagtgtatgatggctaccttaatgggcagcttaatgtcactcgcgctttgggagactggcatatggaaggaatgaagagcagggatggtgggccactcagtgcagagccagaggttaagactgtaaaactaacggaggaagacgagttccttatcattggctgtgatgggatctgggatgtgtttaggagtcaaaatgcagtggattttgctcgtcgcaggcttcaggagcacaatgacccagccacatgtagcaaggatttagttgatgaggctttgaagaggaagagtagcgacaatctggctgttgtggtagtttgcttccaacacgagcctccacccaatttgattgcccctcgctcaagagtgcagaggagcttctctgctgaaggtttgagggagttgcaaagcttcttggatgacttgaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

327

Amino Acids

35.93

Weight (kDa)

5.07

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AatII	GACGTC	1 cut(s)	24
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AccII	CGCG	2 cut(s)	531, 594
AciI	CCGC	2 cut(s)	237, 466
AclWI	GGATC	2 cut(s)	556, 728
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	758, 957
AcyI	GRCGYC	2 cut(s)	14, 21
AdeI	CACNNNGTG	1 cut(s)	650
AfaI	GTAC	1 cut(s)	388
AfeI	AGCGCT	1 cut(s)	405
AflIII	ACRYGT	2 cut(s)	529, 797
AgsI	TTSAA	5 cut(s)	32, 305, 350, 829, 976
AjnI	CCWGG	1 cut(s)	292
AloI	GAACNNNNNNTCC	2 cut(s)	680, 712
AluBI	AGCT	5 cut(s)	252, 434, 580, 927, 960
AluI	AGCT	5 cut(s)	252, 434, 580, 927, 960
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	3 cut(s)	173, 438, 597
AlwI	GGATC	2 cut(s)	556, 728
Aor51HI	AGCGCT	1 cut(s)	405
AoxI	GGCC	2 cut(s)	187, 641
ApeKI	GCWGC	2 cut(s)	513, 577
ApoI	RAATTY	1 cut(s)	175
Asp718I	GGTACC	1 cut(s)	386
AspLEI	GCGC	3 cut(s)	84, 406, 596
AspS9I	GGNCC	2 cut(s)	188, 641
AsuHPI	GGTGA	1 cut(s)	308
AsuNHI	GCTAGC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	386
BauI	CACGAG	1 cut(s)	878
BbsI	GAAGAC	2 cut(s)	291, 696
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	525, 589
BccI	CCATC	5 cut(s)	179, 209, 554, 629, 710
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	3 cut(s)	173, 438, 597
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	407
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	4 cut(s)	237, 466, 514, 578
BlsI	GCNGC	4 cut(s)	238, 467, 515, 579
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	188, 641
BmiI	GGNNCC	2 cut(s)	190, 388
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	2 cut(s)	44, 186
BmsI	GCATC	1 cut(s)	358
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	2 cut(s)	44, 186
BoxI	GACNNNNGTC	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	291, 696
BpmI	CTGGAG	2 cut(s)	108, 462
BpuEI	CTTGAG	2 cut(s)	155, 895
BsaHI	GRCGYC	2 cut(s)	14, 21
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	292, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bse1I	ACTGG	3 cut(s)	39, 192, 611
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	292, 469
BseGI	GGATG	5 cut(s)	286, 373, 640, 733, 973
BseMII	CTCAG	1 cut(s)	661
BseNI	ACTGG	3 cut(s)	39, 192, 611
BseRI	GAGGAG	1 cut(s)	937
BseXI	GCAGC	2 cut(s)	525, 589
BseYI	CCCAGC	1 cut(s)	790
BsgI	GTGCAG	3 cut(s)	343, 672, 938
Bsh1236I	CGCG	2 cut(s)	531, 594
BshFI	GGCC	2 cut(s)	189, 643
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	783
BsmAI	GTCTC	3 cut(s)	173, 438, 597
BsnI	GGCC	2 cut(s)	189, 643
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	496, 522, 548, 720
BspACI	CCGC	2 cut(s)	237, 466
BspANI	GGCC	2 cut(s)	189, 643
BspCNI	CTCAG	1 cut(s)	660
BspFNI	CGCG	2 cut(s)	531, 594
BspLI	GGNNCC	2 cut(s)	190, 388
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	556, 728
BspQI	GCTCTTC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	39, 192, 611
BssECI	CCNNGG	2 cut(s)	292, 469
BssMI	GATC	4 cut(s)	496, 522, 548, 720
BssNI	GRCGYC	2 cut(s)	14, 21
BssSI	CACGAG	1 cut(s)	878
Bst2BI	CACGAG	1 cut(s)	878
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	28, 449, 673
Bst6I	CTCTTC	4 cut(s)	42, 620, 824, 830
BstACI	GRCGYC	2 cut(s)	14, 21
BstC8I	GCNNGC	4 cut(s)	234, 250, 358, 770
BstDEI	CTNAG	1 cut(s)	647
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	5 cut(s)	286, 373, 640, 733, 973
BstFNI	CGCG	2 cut(s)	531, 594
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	3 cut(s)	84, 406, 596
BstKTI	GATC	4 cut(s)	499, 525, 551, 723
BstMAI	GTCTC	3 cut(s)	173, 438, 597
BstMBI	GATC	4 cut(s)	496, 522, 548, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 245, 377, 401, 778
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	3 cut(s)	236, 543, 801
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	292
BstUI	CGCG	2 cut(s)	531, 594
BstV1I	GCAGC	2 cut(s)	525, 589
BstV2I	GAAGAC	2 cut(s)	291, 696
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	189, 643
BtgI	CCRYGG	1 cut(s)	469
BtgZI	GCGATG	1 cut(s)	500
BtsCI	GGATG	5 cut(s)	286, 373, 640, 733, 973
BtsI	GCAGTG	4 cut(s)	339, 390, 462, 756
BtsIMutI	CAGTG	9 cut(s)	24, 180, 199, 339, 390, 462, 558, 655, 756
Cac8I	GCNNGC	4 cut(s)	234, 250, 358, 770
CfoI	GCGC	3 cut(s)	84, 406, 596
Cfr13I	GGNCC	2 cut(s)	188, 641
CseI	GACGC	2 cut(s)	3, 520
Csp6I	GTAC	1 cut(s)	387
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	7 cut(s)	93, 121, 158, 221, 233, 540, 798
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	4 cut(s)	498, 524, 550, 722
DpnII	GATC	4 cut(s)	496, 522, 548, 720
DraIII	CACNNNGTG	1 cut(s)	650
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	4 cut(s)	42, 620, 824, 830
EarI	CTCTTC	4 cut(s)	42, 620, 824, 830
Eco31I	GGTCTC	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	758, 957
EcoRII	CCWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	7 cut(s)	96, 124, 161, 224, 236, 543, 801
FatI	CATG	7 cut(s)	92, 120, 157, 220, 232, 539, 797
FauNDI	CATATG	1 cut(s)	612
Fnu4HI	GCNGC	4 cut(s)	237, 466, 514, 578
FokI	GGATG	5 cut(s)	293, 380, 647, 740, 980
Fsp4HI	GCNGC	4 cut(s)	237, 466, 514, 578
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	3 cut(s)	83, 405, 595
GluI	GCNGC	4 cut(s)	237, 466, 514, 578
GsaI	CCCAGC	1 cut(s)	794
GsuI	CTGGAG	2 cut(s)	108, 462
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	189, 643
HgaI	GACGC	2 cut(s)	3, 520
HhaI	GCGC	3 cut(s)	84, 406, 596
Hin1I	GRCGYC	2 cut(s)	14, 21
Hin1II	CATG	7 cut(s)	96, 124, 161, 224, 236, 543, 801
Hin6I	GCGC	3 cut(s)	82, 404, 594
HinP1I	GCGC	3 cut(s)	82, 404, 594
HindIII	AAGCTT	1 cut(s)	958
HinfI	GANTC	2 cut(s)	59, 739
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	5 cut(s)	87, 172, 350, 776, 912
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	2 cut(s)	536, 768
HpyAV	CCTTC	4 cut(s)	4, 411, 611, 932
HpyCH4III	ACNGT	3 cut(s)	28, 449, 673
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	9 cut(s)	157, 331, 360, 395, 513, 653, 749, 919, 955
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 245, 377, 401, 778
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	2 cut(s)	14, 21
Hsp92II	CATG	7 cut(s)	96, 124, 161, 224, 236, 543, 801
HspAI	GCGC	3 cut(s)	82, 404, 594
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	496, 522, 548, 720
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	3 cut(s)	89, 778, 924
Lsp1109I	GCAGC	2 cut(s)	525, 589
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	22, 586
MalI	GATC	4 cut(s)	498, 524, 550, 722
MboI	GATC	4 cut(s)	496, 522, 548, 720
MboII	GAAGA	8 cut(s)	56, 59, 137, 296, 637, 701, 841, 847
MfeI	CAATTG	2 cut(s)	75, 480
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	6 cut(s)	75, 148, 175, 256, 480, 892
MluI	ACGCGT	1 cut(s)	529
MlyI	GAGTC	1 cut(s)	748
MmeI	TCCRAC	2 cut(s)	394, 898
Mph1103I	ATGCAT	1 cut(s)	159
MseI	TTAA	3 cut(s)	570, 582, 666
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	2 cut(s)	75, 480
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	2 cut(s)	531, 594
MwoI	GCNNNNNNNGC	5 cut(s)	195, 245, 377, 401, 778
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	4 cut(s)	496, 522, 548, 720
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	7 cut(s)	96, 124, 161, 224, 236, 543, 801
NlaIV	GGNNCC	2 cut(s)	190, 388
NmuCI	GTSAC	2 cut(s)	22, 586
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	3 cut(s)	236, 543, 801
PaeI	GCATGC	1 cut(s)	236
PciI	ACATGT	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	4 cut(s)	238, 467, 515, 579
PleI	GAGTC	1 cut(s)	747
PpsI	GAGTC	1 cut(s)	747
PscI	ACATGT	1 cut(s)	797
PshAI	GACNNNNGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	190, 388
PspPI	GGNCC	2 cut(s)	188, 641
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	570, 582, 666
SatI	GCNGC	4 cut(s)	237, 466, 514, 578
Sau3AI	GATC	4 cut(s)	496, 522, 548, 720
Sau96I	GGNCC	2 cut(s)	188, 641
SchI	GAGTC	1 cut(s)	748
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	170, 910
SmoI	CTYRAG	2 cut(s)	170, 910
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	6 cut(s)	75, 148, 175, 256, 480, 892
SsiI	CCGC	2 cut(s)	237, 466
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	28, 449, 673
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	62, 451, 534
TasI	AATT	6 cut(s)	75, 148, 175, 256, 480, 892
TauI	GCSGC	2 cut(s)	239, 468
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	570, 582, 666
Tru9I	TTAA	3 cut(s)	570, 582, 666
TscAI	CASTG	9 cut(s)	31, 187, 199, 346, 397, 462, 558, 655, 756
TseFI	GTSAC	2 cut(s)	22, 586
TseI	GCWGC	2 cut(s)	513, 577
Tsp45I	GTSAC	2 cut(s)	22, 586
TspDTI	ATGAA	5 cut(s)	58, 72, 259, 297, 638
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	9 cut(s)	31, 187, 199, 346, 397, 462, 558, 655, 756
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	3 cut(s)	236, 543, 801
XspI	CTAG	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.