Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Forward (+)

8388713 .. 8399982

Gene Structure 11270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1117700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGGGAAGTAAAGTGGAGAATGGAAGCTCAAGCGAGGGTCGGCCTCCGAACCCTCTTTCGACCGCTGCGGCCTACTGGCAGTGTGGCTTTAGCCCCGCCGATGGCGTTCCAGTGCCGTGCAAGAAATCACTCGTTCGACACCCGTCTCTTATGAAGACGAAAACAAAAGAGATCAAAGTTGAGCCGGGAGTTCAAGCAGAGGACTTTGAATCTAATTTCATTCCAATTGTCCGCTCCGGTGCATGGGCTGACATTGGGTCTCGTCCAAACATGGAAGATGTGTATGTCTGCTTGGACAATTTTATTGACGATTATGGGCTCAAGGATCATGCCGATGGCCCGAGTGCTTTCTATGGGGTGTTTGATGGACATGGAGGAAAGCATGCGGCTGATTTTGCTTCATCCCATCTGCCGAAGTTCATTTTGGAGAATGAAGACTTCCCTACAGATATTGAACAGGTTGTCACTTCAGCGTTTCTGCATACTGACACTGCCTTTGAGGAAGCTTGCACCTTGGATGCCAAACTTGCTTCTGGTACCACTGCATTGACAGCTCTTCTCATTGGAAGGTTGTTGGTGGTTGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGCCGTGGAAAAGCAATTGAAATGTCAAGAGATCACAAACCAATTTGCAGCAAAGAGAAACAACGGATCGAGGCATCTGGAGGACATGTGTATGATGGTTACCTTAATGGGCAACTTAACGTTGCTCGTGCCTTGGGAGACTGGCATATGGAAGGGATGAAGGCCAAGGAGGGTGGGCCACTCAGTGCAGAGCCAGAACTTATGACCACAAAGTTGACAAAGGAGGACGAATTCCTTATCATTGGTTGTGATGGGATCTGGGATGTGTTCAGGAATCAAAATGCTGTGGATTTTGCTCGTCGGAGGCTTCAGGAGCACAATGACCCAGCCGCGTGTAGCAAGGATTTGGTTGATGAGGCTTTGAAGAGGAAGAGCGGGGACAACTTAGCTGCTGTCGTCGTCTGCTTCCAACCACAGCCTCCGCCTAATTTGATTGCCCCTCGCTCCAGAGTGCAGAGGAGTTTTTCGCAGGAAGGTTTGAGGGAGTTGCAGAGCTTCTTGGATGACTTGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

379

Amino Acids

41.35

Weight (kDa)

5.38

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	88 - 334	2.5e-70	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	539
AccBSI	CCGCTC	2 cut(s)	237, 993
AccII	CGCG	1 cut(s)	950
AciI	CCGC	9 cut(s)	66, 71, 99, 235, 389, 619, 948, 993, 1040
AclI	AACGTT	1 cut(s)	738
AclWI	GGATC	3 cut(s)	336, 692, 881
AcsI	RAATTY	1 cut(s)	848
AcuI	CTGAAG	2 cut(s)	456, 911
AdeI	CACNNNGTG	1 cut(s)	803
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	104, 246
AflIII	ACRYGT	1 cut(s)	703
AgsI	TTSAA	6 cut(s)	197, 212, 458, 638, 982, 1129
AhdI	GACNNNNNGTC	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	30, 509, 557, 1007, 1113
AluI	AGCT	5 cut(s)	30, 509, 557, 1007, 1113
Alw21I	GWGCWC	1 cut(s)	936
Alw26I	GTCTC	3 cut(s)	153, 267, 750
AlwI	GGATC	3 cut(s)	336, 692, 881
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	5 cut(s)	44, 72, 340, 780, 794
ApeKI	GCWGC	3 cut(s)	68, 666, 1007
ApoI	RAATTY	1 cut(s)	848
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp718I	GGTACC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	341, 794
AsuC2I	CCSGG	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	744
BbsI	GAAGAC	2 cut(s)	164, 444
Bbv12I	GWGCWC	1 cut(s)	936
BbvI	GCAGC	3 cut(s)	55, 678, 994
BccI	CCATC	6 cut(s)	98, 332, 362, 417, 707, 863
BceAI	ACGGC	2 cut(s)	103, 606
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	3 cut(s)	153, 267, 750
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	7 cut(s)	69, 72, 390, 619, 667, 948, 1008
BlsI	GCNGC	7 cut(s)	70, 73, 391, 620, 668, 949, 1009
Bme1390I	CCNGG	1 cut(s)	189
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	341, 794
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	511, 701
BoxI	GACNNNNGTC	1 cut(s)	145
BpiI	GAAGAC	2 cut(s)	164, 444
BpmI	CTGGAG	3 cut(s)	615, 717, 1048
BpuEI	CTTGAG	2 cut(s)	16, 308
BpuMI	CCSGG	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	516, 622, 750, 783
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 246
Bse1I	ACTGG	3 cut(s)	83, 113, 764
BseDI	CCNNGG	4 cut(s)	516, 622, 750, 783
BseGI	GGATG	5 cut(s)	404, 526, 780, 886, 1126
BseLI	CCNNNNNNNGG	2 cut(s)	104, 246
BseMII	CTCAG	1 cut(s)	814
BseNI	ACTGG	3 cut(s)	83, 113, 764
BseRI	GAGGAG	1 cut(s)	1090
BseXI	GCAGC	3 cut(s)	55, 678, 994
BseYI	CCCAGC	1 cut(s)	943
BsgI	GTGCAG	2 cut(s)	825, 1091
Bsh1236I	CGCG	1 cut(s)	950
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	5 cut(s)	46, 74, 342, 782, 796
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	936
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	188, 240
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	2 cut(s)	104, 246
BsmAI	GTCTC	3 cut(s)	153, 267, 750
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	5 cut(s)	46, 74, 342, 782, 796
Bso31I	GGTCTC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	324, 936
Bsp143I	GATC	5 cut(s)	174, 328, 649, 684, 873
BspACI	CCGC	9 cut(s)	66, 71, 99, 235, 389, 619, 948, 993, 1040
BspANI	GGCC	5 cut(s)	46, 74, 342, 782, 796
BspCNI	CTCAG	1 cut(s)	813
BspFNI	CGCG	1 cut(s)	950
BspLI	GGNNCC	1 cut(s)	541
BspPI	GGATC	3 cut(s)	336, 692, 881
BspQI	GCTCTTC	2 cut(s)	564, 983
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	267
BsrBI	CCGCTC	2 cut(s)	237, 993
BsrI	ACTGG	3 cut(s)	83, 113, 764
BssECI	CCNNGG	4 cut(s)	516, 622, 750, 783
BssMI	GATC	5 cut(s)	174, 328, 649, 684, 873
BssSI	CACGAG	1 cut(s)	744
BssT1I	CCWWGG	3 cut(s)	516, 750, 783
Bst2BI	CACGAG	1 cut(s)	744
Bst6I	CTCTTC	3 cut(s)	564, 977, 983
BstC8I	GCNNGC	2 cut(s)	387, 511
BstDEI	CTNAG	2 cut(s)	800, 1003
BstDSI	CCRYGG	1 cut(s)	622
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	5 cut(s)	404, 526, 780, 886, 1126
BstFNI	CGCG	1 cut(s)	950
BstKTI	GATC	5 cut(s)	177, 331, 652, 687, 876
BstMAI	GTCTC	3 cut(s)	153, 267, 750
BstMBI	GATC	5 cut(s)	174, 328, 649, 684, 873
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 530, 554, 931
BstNSI	RCATGY	2 cut(s)	389, 707
BstPAI	GACNNNNGTC	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	950
BstV1I	GCAGC	3 cut(s)	55, 678, 994
BstV2I	GAAGAC	2 cut(s)	164, 444
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
BsuRI	GGCC	5 cut(s)	46, 74, 342, 782, 796
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	5 cut(s)	404, 526, 780, 886, 1126
BtsI	GCAGTG	4 cut(s)	89, 492, 543, 615
BtsIMutI	CAGTG	6 cut(s)	89, 120, 492, 543, 615, 808
Cac8I	GCNNGC	2 cut(s)	387, 511
Cfr13I	GGNCC	2 cut(s)	341, 794
Csp6I	GTAC	1 cut(s)	540
CspCI	CAANNNNNGTGG	2 cut(s)	772, 807
CviAII	CATG	6 cut(s)	246, 274, 332, 374, 386, 704
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	800, 1003
DpnI	GATC	5 cut(s)	176, 330, 651, 686, 875
DpnII	GATC	5 cut(s)	174, 328, 649, 684, 873
DraIII	CACNNNGTG	1 cut(s)	803
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	564, 977, 983
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	3 cut(s)	564, 977, 983
EciI	GGCGGA	1 cut(s)	1029
Eco130I	CCWWGG	3 cut(s)	516, 750, 783
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	267
Eco57I	CTGAAG	2 cut(s)	456, 911
Eco88I	CYCGRG	1 cut(s)	343
Eco91I	GGTNACC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	848
EcoT14I	CCWWGG	3 cut(s)	516, 750, 783
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	3 cut(s)	516, 750, 783
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	6 cut(s)	249, 277, 335, 377, 389, 707
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	6 cut(s)	245, 273, 331, 373, 385, 703
FauI	CCCGC	2 cut(s)	106, 986
FauNDI	CATATG	1 cut(s)	765
Fnu4HI	GCNGC	7 cut(s)	69, 72, 390, 619, 667, 948, 1008
FokI	GGATG	5 cut(s)	391, 533, 787, 893, 1133
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	7 cut(s)	69, 72, 390, 619, 667, 948, 1008
GluI	GCNGC	7 cut(s)	69, 72, 390, 619, 667, 948, 1008
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	3 cut(s)	615, 717, 1048
HaeIII	GGCC	5 cut(s)	46, 74, 342, 782, 796
HapII	CCGG	2 cut(s)	188, 240
Hin1II	CATG	6 cut(s)	249, 277, 335, 377, 389, 707
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	2 cut(s)	212, 892
HpaII	CCGG	2 cut(s)	188, 240
Hpy166II	GTNNAC	1 cut(s)	834
Hpy188I	TCNGA	2 cut(s)	51, 921
Hpy188III	TCNNGA	5 cut(s)	645, 696, 889, 929, 1065
Hpy8I	GTNNAC	1 cut(s)	834
Hpy99I	CGWCG	2 cut(s)	921, 1019
HpyAV	CCTTC	4 cut(s)	564, 764, 772, 1085
HpyCH4IV	ACGT	1 cut(s)	738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 530, 554, 931
HpyF3I	CTNAG	2 cut(s)	800, 1003
HpySE526I	ACGT	1 cut(s)	738
Hsp92II	CATG	6 cut(s)	249, 277, 335, 377, 389, 707
KpnI	GGTACC	1 cut(s)	543
Kzo9I	GATC	5 cut(s)	174, 328, 649, 684, 873
LguI	GCTCTTC	2 cut(s)	564, 983
LmnI	GCTCC	3 cut(s)	242, 931, 1067
Lsp1109I	GCAGC	3 cut(s)	55, 678, 994
LweI	GCATC	2 cut(s)	511, 701
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	2 cut(s)	466, 716
MalI	GATC	5 cut(s)	176, 330, 651, 686, 875
MbiI	CCGCTC	2 cut(s)	237, 993
MboI	GATC	5 cut(s)	174, 328, 649, 684, 873
MboII	GAAGA	6 cut(s)	169, 290, 449, 551, 994, 1000
MfeI	CAATTG	2 cut(s)	228, 633
MflI	RGATCY	1 cut(s)	873
MhlI	GDGCHC	2 cut(s)	324, 936
MluCI	AATT	7 cut(s)	217, 228, 301, 633, 660, 848, 1045
MmeI	TCCRAC	2 cut(s)	899, 1051
MseI	TTAA	2 cut(s)	723, 735
MslI	CAYNNNNRTG	2 cut(s)	336, 708
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	188, 240
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	228, 633
MvnI	CGCG	1 cut(s)	950
MwoI	GCNNNNNNNGC	4 cut(s)	398, 530, 554, 931
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	5 cut(s)	174, 328, 649, 684, 873
NlaIII	CATG	6 cut(s)	249, 277, 335, 377, 389, 707
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	2 cut(s)	389, 707
PaeI	GCATGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	703
PciSI	GCTCTTC	2 cut(s)	564, 983
PfeI	GAWTC	2 cut(s)	212, 892
PkrI	GCNGC	7 cut(s)	70, 73, 391, 620, 668, 949, 1009
PscI	ACATGT	1 cut(s)	703
PshAI	GACNNNNGTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	738
PspEI	GGTNACC	1 cut(s)	716
PspFI	CCCAGC	1 cut(s)	943
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	2 cut(s)	341, 794
PsuI	RGATCY	1 cut(s)	873
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	2 cut(s)	336, 708
SapI	GCTCTTC	2 cut(s)	564, 983
SaqAI	TTAA	2 cut(s)	723, 735
SatI	GCNGC	7 cut(s)	69, 72, 390, 619, 667, 948, 1008
Sau3AI	GATC	5 cut(s)	174, 328, 649, 684, 873
Sau96I	GGNCC	2 cut(s)	341, 794
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	324, 936
SfaNI	GCATC	2 cut(s)	511, 701
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	336, 708
SmlI	CTYRAG	2 cut(s)	31, 323
SmoI	CTYRAG	2 cut(s)	31, 323
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	7 cut(s)	217, 228, 301, 633, 660, 848, 1045
SsiI	CCGC	9 cut(s)	66, 71, 99, 235, 389, 619, 948, 993, 1040
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	3 cut(s)	516, 750, 783
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	4 cut(s)	62, 139, 604, 687
TasI	AATT	7 cut(s)	217, 228, 301, 633, 660, 848, 1045
TauI	GCSGC	4 cut(s)	74, 392, 621, 950
TfiI	GAWTC	2 cut(s)	212, 892
Tru1I	TTAA	2 cut(s)	723, 735
Tru9I	TTAA	2 cut(s)	723, 735
TscAI	CASTG	6 cut(s)	89, 120, 499, 550, 615, 808
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	68, 666, 1007
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	6 cut(s)	170, 211, 393, 412, 450, 791
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	6 cut(s)	89, 120, 499, 550, 615, 808
XapI	RAATTY	1 cut(s)	848
XceI	RCATGY	2 cut(s)	389, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.