Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002540

Physical Location & Seq

Genomic Coordinates Reverse (-)

23268226 .. 23269907

Gene Structure 1682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCAACCCCATGGGATCAAGCCTACAAGCACATCATCCCCCTTGATTTTAACTCAGTAAATTCGGTGCCTGACTCATTTGTATGGTCTCAATCCGATGTCATTCAACCAGATAACGGGTTATTTATACCCATTATCGACCTCATGGATTCAAATGCCCCGAAGCTCATAGTCGAGGCATGTGAGACATGGGGTGTTTTCCAATTGAAAAACCATGGTGTTCGTACAAAGATTATGGAGGACATCGAGTCTGAGGCTCGAAAGTTGTTTGATCTCCCCATCGACCAAAAATTGAAGGCTGTACGATCTCCTGATGGGTTGAGCGGATACGGAATCGTCCCAATTCAGTCCTTGTTTTCCACCTTTATGTGGCATGAAGGGCTTACCCTCTTTGGCTCTGCAATTGATCATGCTAAGGCGCTGTGGCCTCATGACTATCAACAATTTAGTGATACAATAGATGAATATCAGAGTCAAATGAAGGCATTAGCCGAGAAAGTAACGGGCATCCTCTTCAGAGCCTTGAGCATTCCTGTGGAAGATTTGAATTGGTTTGATGATCCAACGAACAGAAGTGGGTGCAACTTGGCTTTACAGTTGAACTCTTACCCTCCATGCCCCGAACCGACCCGAACCTTGGGTCTAGCCCCGCACACTGACACCTCCATTGTGACCATACTTCAAGCTAAAACCAGCGGTCTCCAAGTCTTCAAAGACGGAGTTGGGTGGATTCCGGTGGAACCAGAACCTGAAGCAATCATCGTGAACCTTGGTGATTTCACTCATCTTCTATCCAATGGTCGATTCATCAGTGTTCTTCATCGTGTGGTGGTGAAACCGATCCAACGCTACTCAATGGGATACTTCTATCGGCCTCCGAAGGATTTTGTTGTGTCACCACTTTTGTCGAAGGATCTGGGTCCGGGAGAAGTTCCTCGGTATCGTTCAATCATAGCAAAGGAGTATCATGAACTGAAGGCCAATTGCAAGCATTATGAGAAAGCATTTTCTCTCATCGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

342

Amino Acids

38.44

Weight (kDa)

5.47

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 133	8.2e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	195 - 292	3.5e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30020 FvH4_2g30021 FvH4_2g30040
malus_domestica	MD08G1138400.v1.1 MD15G1116300.v1.1
prunus_persica	Prupe.1G467600_v2.0.a1 Prupe.1G467600_v2.0.a1 Prupe.1G467800_v2.0.a1
pyrus_communis	pycom08g11660 pycom15g10480
rosa_chinensis	RchiOBHm_Chr1g0337611 RchiOBHm_Chr6g0312151 RchiOBHm_Chr6g0312861
rosa_laevigata	RLG00000010291 RLG00000010350 RLG00000029265
rosa_multiflora	Rmu_co8006886.1_g000001 Rmu_co8436821.1_g000001 Rmu_sc0001215.1_g000020 Rmu_sc0008049.1_g000012
rosa_roxburghii	Rroxscaffold_4G00314130 Rroxscaffold_7G00156400 Rroxscaffold_7G00157010
rosa_rugosa	Rorug01G0136200.1 Rorug06G0393100 Rorug06G0400200
rosa_samantha	Rh1BG124500 Rh1CG145700 Rh1DG163600 Rh6AG510200 Rh6AG517400 Rh6BG521000 Rh6BG528900 Rh6CG527000 Rh6CG533500 Rh6DG512400 Rh6DG520000 Rh6DG520100
rosa_wichuraiana	Rw1G012780 Rw6G044380 Rw6G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	324
AciI	CCGC	3 cut(s)	324, 650, 696
AclWI	GGATC	4 cut(s)	24, 554, 835, 921
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	3 cut(s)	499, 771, 995
AfaI	GTAC	2 cut(s)	226, 303
AfiI	CCNNNNNNNGG	3 cut(s)	116, 369, 637
AgsI	TTSAA	9 cut(s)	107, 153, 208, 295, 547, 601, 683, 712, 948
AhdI	GACNNNNNGTC	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AluBI	AGCT	2 cut(s)	166, 686
AluI	AGCT	2 cut(s)	166, 686
Alw26I	GTCTC	3 cut(s)	93, 179, 704
AlwI	GGATC	4 cut(s)	24, 554, 835, 921
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	3 cut(s)	425, 872, 978
ApoI	RAATTY	1 cut(s)	61
ArsI	GACNNNNNNTTYG	2 cut(s)	625, 657
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	1 cut(s)	924
AsuHPI	GGTGA	3 cut(s)	785, 844, 888
AvaII	GGWCC	1 cut(s)	920
BanI	GGYRCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	700
BccI	CCATC	2 cut(s)	287, 308
BciVI	GTATCC	2 cut(s)	320, 854
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	924
BcoDI	GTCTC	3 cut(s)	93, 179, 704
BfaI	CTAG	1 cut(s)	644
BfoI	RGCGCY	1 cut(s)	422
BfuI	GTATCC	2 cut(s)	320, 854
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	1 cut(s)	920
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	3 cut(s)	69, 741, 921
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	700
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	924
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	2 cut(s)	93, 704
BsaJI	CCNNGG	5 cut(s)	11, 214, 636, 769, 935
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 369, 637
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	5 cut(s)	11, 214, 636, 769, 935
BseGI	GGATG	2 cut(s)	36, 507
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	116, 369, 637
BseMII	CTCAG	2 cut(s)	69, 243
BshFI	GGCC	3 cut(s)	427, 874, 980
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	734, 923
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	116, 369, 637
BsmAI	GTCTC	3 cut(s)	93, 179, 704
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	427, 874, 980
Bso31I	GGTCTC	2 cut(s)	93, 704
Bsp143I	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
Bsp19I	CCATGG	2 cut(s)	11, 214
BspACI	CCGC	3 cut(s)	324, 650, 696
BspANI	GGCC	3 cut(s)	427, 874, 980
BspCNI	CTCAG	2 cut(s)	68, 244
BspHI	TCATGA	2 cut(s)	430, 967
BspLI	GGNNCC	3 cut(s)	69, 741, 921
BspPI	GGATC	4 cut(s)	24, 554, 835, 921
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	2 cut(s)	93, 704
BsrBI	CCGCTC	1 cut(s)	324
BssECI	CCNNGG	5 cut(s)	11, 214, 636, 769, 935
BssMI	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
BssT1I	CCWWGG	4 cut(s)	11, 214, 636, 769
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	3 cut(s)	55, 252, 414
BstDSI	CCRYGG	2 cut(s)	11, 214
BstF5I	GGATG	2 cut(s)	36, 507
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	7 cut(s)	19, 274, 308, 409, 562, 843, 916
BstMAI	GTCTC	3 cut(s)	93, 179, 704
BstMBI	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	922
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuI	GTATCC	2 cut(s)	320, 854
BsuRI	GGCC	3 cut(s)	427, 874, 980
BtgI	CCRYGG	2 cut(s)	11, 214
BtsCI	GGATG	2 cut(s)	36, 507
BtsIMutI	CAGTG	2 cut(s)	654, 817
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	749
CciI	TCATGA	2 cut(s)	430, 967
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	2 cut(s)	225, 302
CviQI	GTAC	2 cut(s)	225, 302
DdeI	CTNAG	3 cut(s)	55, 252, 414
DpnI	GATC	7 cut(s)	18, 273, 307, 408, 561, 842, 915
DpnII	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	518
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	518
Eco130I	CCWWGG	4 cut(s)	11, 214, 636, 769
Eco31I	GGTCTC	2 cut(s)	93, 704
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	3 cut(s)	499, 771, 995
EcoT14I	CCWWGG	4 cut(s)	11, 214, 636, 769
ErhI	CCWWGG	4 cut(s)	11, 214, 636, 769
FaqI	GGGAC	1 cut(s)	323
FauI	CCCGC	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	406
FokI	GGATG	2 cut(s)	23, 494
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	427, 874, 980
HapII	CCGG	2 cut(s)	734, 923
HhaI	GCGC	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	7 cut(s)	74, 149, 248, 333, 472, 730, 804
HpaII	CCGG	2 cut(s)	734, 923
HphI	GGTGA	3 cut(s)	785, 844, 888
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	5 cut(s)	97, 253, 471, 518, 879
Hpy188III	TCNNGA	4 cut(s)	311, 431, 763, 968
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	6 cut(s)	289, 371, 475, 874, 904, 970
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4V	TGCA	3 cut(s)	401, 582, 987
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	3 cut(s)	55, 252, 414
HspAI	GCGC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	644
MaeIII	GTNAC	3 cut(s)	499, 670, 894
MalI	GATC	7 cut(s)	18, 273, 307, 408, 561, 842, 915
MbiI	CCGCTC	1 cut(s)	324
MboI	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
MboII	GAAGA	5 cut(s)	505, 551, 700, 779, 809
MfeI	CAATTG	3 cut(s)	203, 402, 982
MflI	RGATCY	1 cut(s)	913
MluCI	AATT	9 cut(s)	61, 203, 290, 342, 402, 443, 547, 982, 1021
MlyI	GAGTC	3 cut(s)	68, 257, 481
MmeI	TCCRAC	2 cut(s)	587, 868
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	3 cut(s)	82, 365, 533
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	2 cut(s)	734, 923
MspR9I	CCNGG	1 cut(s)	924
MunI	CAATTG	3 cut(s)	203, 402, 982
Mva1269I	GAATGC	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	379
NciI	CCSGG	1 cut(s)	924
NcoI	CCATGG	2 cut(s)	11, 214
NdeII	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
NlaIV	GGNNCC	3 cut(s)	69, 741, 921
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	670, 894
NspI	RCATGY	1 cut(s)	183
PagI	TCATGA	2 cut(s)	430, 967
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	4 cut(s)	149, 333, 730, 804
PfoI	TCCNGGA	1 cut(s)	922
PleI	GAGTC	3 cut(s)	68, 256, 480
PpsI	GAGTC	3 cut(s)	68, 256, 480
PspN4I	GGNNCC	3 cut(s)	69, 741, 921
PspPI	GGNCC	1 cut(s)	920
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	913
RsaI	GTAC	2 cut(s)	226, 303
RsaNI	GTAC	2 cut(s)	225, 302
RseI	CAYNNNNRTG	3 cut(s)	82, 365, 533
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	7 cut(s)	16, 271, 305, 406, 559, 840, 913
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	3 cut(s)	68, 257, 481
ScrFI	CCNGG	1 cut(s)	924
SetI	ASST	8 cut(s)	144, 168, 365, 638, 665, 688, 751, 771
SfaNI	GCATC	1 cut(s)	516
SinI	GGWCC	1 cut(s)	920
SmiMI	CAYNNNNRTG	3 cut(s)	82, 365, 533
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	9 cut(s)	61, 203, 290, 342, 402, 443, 547, 982, 1021
SsiI	CCGC	3 cut(s)	324, 650, 696
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	922
StyI	CCWWGG	4 cut(s)	11, 214, 636, 769
TaaI	ACNGT	1 cut(s)	597
TaqI	TCGA	8 cut(s)	138, 174, 246, 259, 282, 802, 908, 1017
TasI	AATT	9 cut(s)	61, 203, 290, 342, 402, 443, 547, 982, 1021
TfiI	GAWTC	4 cut(s)	149, 333, 730, 804
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	2 cut(s)	661, 817
TseFI	GTSAC	2 cut(s)	670, 894
Tsp45I	GTSAC	2 cut(s)	670, 894
TspDTI	ATGAA	6 cut(s)	390, 477, 494, 796, 809, 984
TspGWI	ACGGA	2 cut(s)	345, 732
TspRI	CASTG	2 cut(s)	661, 817
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.