Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002540

Physical Location & Seq

Genomic Coordinates Forward (+)

33697265 .. 33698661

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAACTCCATCGGATCAAACCTACAAGCACATCATCCCCCTTGACTTTAACTCAGTGAAGTCGGTGCCGGACTCGTTTGTATGGCTTCAATCCAATGCCATTCAATCCGACGATGGGTTATCGATACCCGTTATCGACCTCATGGATCCAAATGCCCCGAAACTCATAGTTGAGGCATGTGAGACATGGGGTGTTTTCCATTTGAAAGACCATGGCATTCCAACAAAGATTATGGAGCACGTCGAGTCTGAGGCTCGAAAATTGTTTGATCTTCCCATCGACCAAAAACTGAAGGCTGTACGATCTCCCGATGGGCAGAGCGGATACGGAATCGTCCCAATGCAGTCCTTGTTTTCCACCTTTATGTGGCATGAAGGGCTTACCATCCTTGGCTCTGCAATTGATCATGCTAAGGTGCTGTGGCCTAATGACTATCAACAATTTTGTGACATAATAGATGATTATCAGAGGCAAATGAAGGCATTAGCCGAGAAACTAATGCGCATCCTCTTCAAAGCCTTGAGCATTCCTGTAGAAGATGTGAATTGGTTTGATGATCCAACTAACAGCAGTGGCTGCAATCTGGCTTTACAGTTGAACTCTTACCCTCCATGCCCCGAACCAACCCGGACCTTGGGTCTAGCCCCGCACACAGACACCTCCGTTGTGACCATACTCCGAGCTAAAACCAGTGGTCTCCAAGTCTTCAAAGACGGAGTTGGGTGGATTCCGGTGGAACCGAACCCCGATGCACTCATCGTGAACCTTGGTGATTTCACCCGCATTCTTTCCAACGGTCGATTTATCAGTGTTCTTCATCGTGTGGTGGCGAAACGGATCCAACGCTACTCAATGGGATACTTCTTTAGGCCCCCAATGGATTTTGATGTGTCACCACTTCTGTCGAAAGATTTGGGTCAGGGACAGGTTCCTCGGTATCGCCCAGTCACAGCAAAGGAGTATCTTGCTCTGAAGGCCAAGCATCTTGAAAAAGCATTTTCTCTCATTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

339

Amino Acids

38.11

Weight (kDa)

5.99

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 133	3.4e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	195 - 292	3.4e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30020 FvH4_2g30021 FvH4_2g30040
malus_domestica	MD08G1138400.v1.1 MD15G1116300.v1.1
prunus_persica	Prupe.1G467600_v2.0.a1 Prupe.1G467600_v2.0.a1 Prupe.1G467800_v2.0.a1
pyrus_communis	pycom08g11660 pycom15g10480
rosa_chinensis	RchiOBHm_Chr1g0337611 RchiOBHm_Chr6g0312151 RchiOBHm_Chr6g0312861
rosa_laevigata	RLG00000010291 RLG00000010350 RLG00000029265
rosa_multiflora	Rmu_co8006886.1_g000001 Rmu_co8436821.1_g000001 Rmu_sc0001215.1_g000020 Rmu_sc0008049.1_g000012
rosa_roxburghii	Rroxscaffold_4G00314130 Rroxscaffold_7G00156400 Rroxscaffold_7G00157010
rosa_rugosa	Rorug01G0136200.1 Rorug06G0393100 Rorug06G0400200
rosa_samantha	Rh1BG124500 Rh1CG145700 Rh1DG163600 Rh6AG510200 Rh6AG517400 Rh6BG521000 Rh6BG528900 Rh6CG527000 Rh6CG533500 Rh6DG512400 Rh6DG520000 Rh6DG520100
rosa_wichuraiana	Rw1G012780 Rw6G044380 Rw6G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	324
AciI	CCGC	3 cut(s)	324, 650, 784
AclWI	GGATC	6 cut(s)	24, 143, 156, 554, 835, 848
AcuI	CTGAAG	2 cut(s)	314, 995
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	117, 369, 637
AgsI	TTSAA	8 cut(s)	92, 107, 208, 517, 601, 712, 992, 1013
AhdI	GACNNNNNGTC	1 cut(s)	639
AjiI	CACGTC	1 cut(s)	244
AluBI	AGCT	1 cut(s)	686
AluI	AGCT	1 cut(s)	686
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	2 cut(s)	179, 704
AlwI	GGATC	6 cut(s)	24, 143, 156, 554, 835, 848
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	3 cut(s)	425, 872, 978
ApeKI	GCWGC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	633, 873
AsuC2I	CCSGG	1 cut(s)	631
AsuHPI	GGTGA	3 cut(s)	772, 785, 888
AvaII	GGWCC	1 cut(s)	633
BamHI	GGATCC	2 cut(s)	148, 840
BanI	GGYRCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	5 cut(s)	19, 110, 287, 308, 395
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciVI	GTATCC	2 cut(s)	320, 854
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	179, 704
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	534
BfuI	GTATCC	2 cut(s)	320, 854
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	633
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	633, 873
BmiI	GGNNCC	6 cut(s)	69, 150, 741, 842, 875, 933
BmrFI	CCNGG	1 cut(s)	631
BmrI	ACTGGG	1 cut(s)	941
BmsI	GCATC	3 cut(s)	516, 742, 994
BmuI	ACTGGG	1 cut(s)	941
BpiI	GAAGAC	1 cut(s)	700
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	5 cut(s)	214, 391, 636, 769, 935
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 369, 637
Bse1I	ACTGG	2 cut(s)	693, 947
Bse8I	GATNNNNATC	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	5 cut(s)	214, 391, 636, 769, 935
BseGI	GGATG	3 cut(s)	36, 387, 507
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	117, 369, 637
BseMII	CTCAG	2 cut(s)	69, 243
BseNI	ACTGG	2 cut(s)	693, 947
BseXI	GCAGC	1 cut(s)	566
Bsh1285I	CGRYCG	1 cut(s)	802
BshFI	GGCC	3 cut(s)	427, 874, 980
BshNI	GGYRCC	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	802
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	71, 631, 734
BslFI	GGGAC	2 cut(s)	323, 939
BslI	CCNNNNNNNGG	3 cut(s)	117, 369, 637
BsmAI	GTCTC	2 cut(s)	179, 704
BsmFI	GGGAC	2 cut(s)	323, 939
BsmI	GAATGC	3 cut(s)	219, 528, 786
BsnI	GGCC	3 cut(s)	427, 874, 980
Bso31I	GGTCTC	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	3 cut(s)	324, 650, 784
BspANI	GGCC	3 cut(s)	427, 874, 980
BspCNI	CTCAG	2 cut(s)	68, 244
BspDI	ATCGAT	1 cut(s)	125
BspLI	GGNNCC	6 cut(s)	69, 150, 741, 842, 875, 933
BspPI	GGATC	6 cut(s)	24, 143, 156, 554, 835, 848
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	693, 947
BssECI	CCNNGG	5 cut(s)	214, 391, 636, 769, 935
BssMI	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
BssT1I	CCWWGG	4 cut(s)	214, 391, 636, 769
Bst4CI	ACNGT	2 cut(s)	597, 800
Bst6I	CTCTTC	1 cut(s)	518
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	55, 252, 414
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	36, 387, 507
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	7 cut(s)	19, 151, 274, 308, 409, 562, 843
BstMAI	GTCTC	2 cut(s)	179, 704
BstMBI	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
BstMCI	CGRYCG	1 cut(s)	802
BstMWI	GCNNNNNNNGC	3 cut(s)	379, 579, 977
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	2 cut(s)	148, 840
BstYI	RGATCY	2 cut(s)	148, 840
Bsu15I	ATCGAT	1 cut(s)	125
BsuI	GTATCC	2 cut(s)	320, 854
BsuRI	GGCC	3 cut(s)	427, 874, 980
BsuTUI	ATCGAT	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	36, 387, 507
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	4 cut(s)	63, 580, 700, 817
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	2 cut(s)	633, 873
ClaI	ATCGAT	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	7 cut(s)	145, 180, 189, 215, 374, 410, 615
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	3 cut(s)	55, 252, 414
DpnI	GATC	7 cut(s)	18, 150, 273, 307, 408, 561, 842
DpnII	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
DriI	GACNNNNNGTC	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	518
Eam1105I	GACNNNNNGTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	518
Eco130I	CCWWGG	4 cut(s)	214, 391, 636, 769
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	633
Eco57I	CTGAAG	2 cut(s)	314, 995
EcoO109I	RGGNCCY	1 cut(s)	873
EcoT14I	CCWWGG	4 cut(s)	214, 391, 636, 769
ErhI	CCWWGG	4 cut(s)	214, 391, 636, 769
FaeI	CATG	7 cut(s)	148, 183, 192, 218, 377, 413, 618
FaqI	GGGAC	2 cut(s)	323, 939
FatI	CATG	7 cut(s)	144, 179, 188, 214, 373, 409, 614
FauI	CCCGC	2 cut(s)	657, 791
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	3 cut(s)	23, 374, 494
Fsp4HI	GCNGC	1 cut(s)	580
FspAI	RTGCGCAY	1 cut(s)	506
FspBI	CTAG	1 cut(s)	644
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	1 cut(s)	580
HaeIII	GGCC	3 cut(s)	427, 874, 980
HapII	CCGG	3 cut(s)	71, 631, 734
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	7 cut(s)	148, 183, 192, 218, 377, 413, 618
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	4 cut(s)	74, 248, 333, 730
HpaII	CCGG	3 cut(s)	71, 631, 734
HphI	GGTGA	3 cut(s)	772, 785, 888
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	6 cut(s)	16, 112, 253, 471, 683, 975
Hpy188III	TCNNGA	3 cut(s)	311, 763, 989
Hpy8I	GTNNAC	1 cut(s)	766
Hpy99I	CGWCG	2 cut(s)	116, 248
HpyAV	CCTTC	4 cut(s)	289, 371, 475, 970
HpyCH4III	ACNGT	2 cut(s)	597, 800
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	346, 401, 582, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	379, 579, 977
HpyF3I	CTNAG	3 cut(s)	55, 252, 414
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	7 cut(s)	148, 183, 192, 218, 377, 413, 618
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	9 cut(s)	84, 546, 572, 644, 706, 747, 908, 914, 960
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	3 cut(s)	516, 742, 994
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	4 cut(s)	449, 670, 894, 949
MalI	GATC	7 cut(s)	18, 150, 273, 307, 408, 561, 842
MbiI	CCGCTC	1 cut(s)	324
MboI	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
MboII	GAAGA	5 cut(s)	266, 505, 551, 700, 809
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	148, 840
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	5 cut(s)	263, 402, 443, 547, 1015
MlyI	GAGTC	2 cut(s)	68, 257
MmeI	TCCRAC	5 cut(s)	135, 248, 587, 819, 868
MnlI	CCTC	8 cut(s)	152, 169, 247, 465, 521, 621, 673, 945
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	3 cut(s)	71, 631, 734
MspR9I	CCNGG	1 cut(s)	631
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	3 cut(s)	219, 528, 786
MwoI	GCNNNNNNNGC	3 cut(s)	379, 579, 977
NciI	CCSGG	1 cut(s)	631
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
NlaIII	CATG	7 cut(s)	148, 183, 192, 218, 377, 413, 618
NlaIV	GGNNCC	6 cut(s)	69, 150, 741, 842, 875, 933
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	4 cut(s)	449, 670, 894, 949
NsbI	TGCGCA	1 cut(s)	506
NspI	RCATGY	1 cut(s)	183
PctI	GAATGC	3 cut(s)	219, 528, 786
PfeI	GAWTC	2 cut(s)	333, 730
PkrI	GCNGC	1 cut(s)	581
PleI	GAGTC	2 cut(s)	68, 256
PpsI	GAGTC	2 cut(s)	68, 256
PspN4I	GGNNCC	6 cut(s)	69, 150, 741, 842, 875, 933
PspPI	GGNCC	2 cut(s)	633, 873
PstNI	CAGNNNCTG	1 cut(s)	579
PsuI	RGATCY	2 cut(s)	148, 840
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	7 cut(s)	16, 148, 271, 305, 406, 559, 840
Sau96I	GGNCC	2 cut(s)	633, 873
SchI	GAGTC	2 cut(s)	68, 257
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	3 cut(s)	516, 742, 994
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	5 cut(s)	263, 402, 443, 547, 1015
SsiI	CCGC	3 cut(s)	324, 650, 784
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	4 cut(s)	214, 391, 636, 769
TaaI	ACNGT	2 cut(s)	597, 800
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	7 cut(s)	125, 138, 246, 259, 282, 802, 908
TasI	AATT	5 cut(s)	263, 402, 443, 547, 1015
TfiI	GAWTC	2 cut(s)	333, 730
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	4 cut(s)	63, 580, 700, 817
TseFI	GTSAC	4 cut(s)	449, 670, 894, 949
TseI	GCWGC	1 cut(s)	579
Tsp45I	GTSAC	4 cut(s)	449, 670, 894, 949
TspDTI	ATGAA	3 cut(s)	390, 494, 809
TspGWI	ACGGA	4 cut(s)	345, 655, 732, 853
TspRI	CASTG	4 cut(s)	63, 580, 700, 817
VpaK11BI	GGWCC	1 cut(s)	633
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.