Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002540

Physical Location & Seq

Genomic Coordinates Forward (+)

67051114 .. 67052662

Gene Structure 1549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG520100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAGGCCTTGGCAGAGCAACTGATGCGCATCCTCTTCAAAGCCATGAACATTCCTTTAGAAGAAGTCAACTGGTTGGATGGTCCAACGAACAGCAACGGCTGCAATCTGGCTCTACAGCTGAACTCTTACCCTCCATACCCTGGCCCGACGCGAACCTTGGGCCTTGCACCACACACTGACACTTCCATGGTAACCCTGATCCCAGCTAAAACCAGCGGCCTCCAAGTCTTCAAAGAAGGAGTTGGGTGGGTTGCGGTGCATCCCTTACCCGATGCACTCATCGTGAATCTTGGTGATTTCCCCGGCATTCTATCCAGCGGTCGATTCATCAATGTTCTTCATCGTGTGGTGGTGAAACCGATCCAACGCTACTCAATGGGATTCTTCTTTAGGCCCCCAATGGATTTTGTTGTGTCACCACTTCTGTTGAAGGATTTGGGTCTGAGACAAGTTACTTTGCATCGTTCAGTCACAACAAAGGATTATCTTGCCCTGAAGGCCAAGCATCTTGAAAAAACATTTTCTCTCATTGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

180

Amino Acids

20.01

Weight (kDa)

9.48

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	36 - 133	3.4e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30020 FvH4_2g30021 FvH4_2g30040
malus_domestica	MD08G1138400.v1.1 MD15G1116300.v1.1
prunus_persica	Prupe.1G467600_v2.0.a1 Prupe.1G467600_v2.0.a1 Prupe.1G467800_v2.0.a1
pyrus_communis	pycom08g11660 pycom15g10480
rosa_chinensis	RchiOBHm_Chr1g0337611 RchiOBHm_Chr6g0312151 RchiOBHm_Chr6g0312861
rosa_laevigata	RLG00000010291 RLG00000010350 RLG00000029265
rosa_multiflora	Rmu_co8006886.1_g000001 Rmu_co8436821.1_g000001 Rmu_sc0001215.1_g000020 Rmu_sc0008049.1_g000012
rosa_roxburghii	Rroxscaffold_4G00314130 Rroxscaffold_7G00156400 Rroxscaffold_7G00157010
rosa_rugosa	Rorug01G0136200.1 Rorug06G0393100 Rorug06G0400200
rosa_samantha	Rh1BG124500 Rh1CG145700 Rh1DG163600 Rh6AG510200 Rh6AG517400 Rh6BG521000 Rh6BG528900 Rh6CG527000 Rh6CG533500 Rh6DG512400 Rh6DG520000 Rh6DG520100
rosa_wichuraiana	Rw1G012780 Rw6G044380 Rw6G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccII	CGCG	1 cut(s)	154
AciI	CCGC	3 cut(s)	219, 257, 321
AclWI	GGATC	2 cut(s)	196, 358
AcuI	CTGAAG	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	40, 235, 433, 515, 536
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	121, 209
AluI	AGCT	2 cut(s)	121, 209
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	2 cut(s)	196, 358
AoxI	GGCC	6 cut(s)	6, 145, 163, 220, 395, 501
ApeKI	GCWGC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	4 cut(s)	83, 146, 163, 396
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	308, 367, 411
AvaII	GGWCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	442
BfmI	CTRYAG	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	2 cut(s)	103, 220
BlsI	GCNGC	2 cut(s)	104, 221
Bme1390I	CCNGG	2 cut(s)	144, 306
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	4 cut(s)	83, 146, 163, 396
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	2 cut(s)	144, 306
BmsI	GCATC	6 cut(s)	15, 39, 265, 271, 472, 517
BpiI	GAAGAC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	5 cut(s)	9, 142, 159, 189, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	5 cut(s)	9, 142, 159, 189, 304
BseGI	GGATG	3 cut(s)	30, 85, 262
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	6 cut(s)	8, 147, 165, 222, 397, 503
BsiEI	CGRYCG	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	6 cut(s)	8, 147, 165, 222, 397, 503
Bsp143I	GATC	2 cut(s)	201, 363
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	219, 257, 321
BspANI	GGCC	6 cut(s)	8, 147, 165, 222, 397, 503
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	2 cut(s)	196, 358
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	5 cut(s)	9, 142, 159, 189, 304
BssMI	GATC	2 cut(s)	201, 363
BssT1I	CCWWGG	3 cut(s)	9, 159, 189
Bst2UI	CCWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	2 cut(s)	25, 102
BstDEI	CTNAG	1 cut(s)	446
BstDSI	CCRYGG	1 cut(s)	189
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	30, 85, 262
BstFNI	CGCG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	204, 366
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	201, 363
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 102, 500
BstNI	CCWGG	1 cut(s)	144
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	142, 304
BstSFI	CTRYAG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	223
BsuRI	GGCC	6 cut(s)	8, 147, 165, 222, 397, 503
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	30, 85, 262
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	4 cut(s)	83, 146, 163, 396
CseI	GACGC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	2 cut(s)	46, 190
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	2 cut(s)	203, 365
DpnII	GATC	2 cut(s)	201, 363
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	3 cut(s)	9, 159, 189
Eco147I	AGGCCT	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	518
Eco91I	GGTNACC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	396
EcoO65I	GGTNACC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	3 cut(s)	9, 159, 189
ErhI	CCWWGG	3 cut(s)	9, 159, 189
FaeI	CATG	2 cut(s)	49, 193
FaiI	YATR	3 cut(s)	47, 139, 191
FatI	CATG	2 cut(s)	45, 189
Fnu4HI	GCNGC	2 cut(s)	103, 220
FokI	GGATG	3 cut(s)	17, 92, 249
Fsp4HI	GCNGC	2 cut(s)	103, 220
FspAI	RTGCGCAY	1 cut(s)	29
FspI	TGCGCA	1 cut(s)	29
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	103, 220
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	6 cut(s)	8, 147, 165, 222, 397, 503
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	49, 193
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	289, 327, 384
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	3 cut(s)	308, 367, 411
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	2 cut(s)	286, 512
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	233, 427, 493
HpyCH4V	TGCA	5 cut(s)	105, 170, 262, 278, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 102, 500
HpyF3I	CTNAG	1 cut(s)	446
Hsp92II	CATG	2 cut(s)	49, 193
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	201, 363
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	6 cut(s)	15, 39, 265, 271, 472, 517
MaeIII	GTNAC	4 cut(s)	193, 417, 454, 472
MalI	GATC	2 cut(s)	203, 365
MboI	GATC	2 cut(s)	201, 363
MboII	GAAGA	5 cut(s)	28, 74, 223, 332, 379
MluCI	AATT	1 cut(s)	538
MmeI	TCCRAC	3 cut(s)	57, 110, 391
MnlI	CCTC	3 cut(s)	44, 144, 233
MseI	TTAA	1 cut(s)	541
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	3 cut(s)	121, 219, 321
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	144, 306
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	25, 102, 500
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	201, 363
NlaIII	CATG	2 cut(s)	49, 193
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	2 cut(s)	417, 472
NsbI	TGCGCA	1 cut(s)	29
PceI	AGGCCT	1 cut(s)	8
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	289, 327, 384
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	104, 221
Psp6I	CCWGG	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	4 cut(s)	83, 146, 163, 396
PvuII	CAGCTG	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	541
SatI	GCNGC	2 cut(s)	103, 220
Sau3AI	GATC	2 cut(s)	201, 363
Sau96I	GGNCC	4 cut(s)	83, 146, 163, 396
ScrFI	CCNGG	2 cut(s)	144, 306
SetI	ASST	3 cut(s)	123, 161, 211
SfaNI	GCATC	6 cut(s)	15, 39, 265, 271, 472, 517
SfcI	CTRYAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	538
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	219, 257, 321
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	142, 304
StyI	CCWWGG	3 cut(s)	9, 159, 189
TaqI	TCGA	1 cut(s)	325
TasI	AATT	1 cut(s)	538
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	289, 327, 384
Tru1I	TTAA	1 cut(s)	541
Tru9I	TTAA	1 cut(s)	541
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	2 cut(s)	417, 472
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	2 cut(s)	417, 472
TspDTI	ATGAA	4 cut(s)	17, 62, 319, 332
TspRI	CASTG	1 cut(s)	184
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.