Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8436821.1

Orthogroup ID

OG0002540

Physical Location & Seq

Genomic Coordinates Forward (+)

559 .. 1011

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8436821.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggctactcctgaggaagcctacatgcgtatcaccccccttgattttggctcagccaagtcagttccagattccttcgtgtggccccaagcatccgatgacgtccactctagcgacgggttaaccatacccgttatcgacctcacggatccgaatgccccgcaactcataacggaggcatgtcagacatggggtattctccaattgaaaggacatggaattccaactaagcttatggaggacatggagtctgagtgtgaaagattgtttagtctcccaagagaccaaaaaatgaaggccttaagatctccaggcgggagtacaggatacggtatcgtcccgatgcagtccttgttttccaccaccatgtggcacgaagggctcaccatcatggggtctgcaattgatcatgctaggctgctttggcctaatgattataaaggattttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

150

Amino Acids

16.66

Weight (kDa)

4.79

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30020 FvH4_2g30021 FvH4_2g30040
malus_domestica	MD08G1138400.v1.1 MD15G1116300.v1.1
prunus_persica	Prupe.1G467600_v2.0.a1 Prupe.1G467600_v2.0.a1 Prupe.1G467800_v2.0.a1
pyrus_communis	pycom08g11660 pycom15g10480
rosa_chinensis	RchiOBHm_Chr1g0337611 RchiOBHm_Chr6g0312151 RchiOBHm_Chr6g0312861
rosa_laevigata	RLG00000010291 RLG00000010350 RLG00000029265
rosa_multiflora	Rmu_co8006886.1_g000001 Rmu_co8436821.1_g000001 Rmu_sc0001215.1_g000020 Rmu_sc0008049.1_g000012
rosa_roxburghii	Rroxscaffold_4G00314130 Rroxscaffold_7G00156400 Rroxscaffold_7G00157010
rosa_rugosa	Rorug01G0136200.1 Rorug06G0393100 Rorug06G0400200
rosa_samantha	Rh1BG124500 Rh1CG145700 Rh1DG163600 Rh6AG510200 Rh6AG517400 Rh6BG521000 Rh6BG528900 Rh6CG527000 Rh6CG533500 Rh6DG512400 Rh6DG520000 Rh6DG520100
rosa_wichuraiana	Rw1G012780 Rw6G044380 Rw6G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AatII	GACGTC	1 cut(s)	105
AccB7I	CCANNNNNTGG	1 cut(s)	369
AciI	CCGC	2 cut(s)	161, 315
AclWI	GGATC	2 cut(s)	143, 156
AcsI	RAATTY	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	3 cut(s)	81, 369, 393
AflII	CTTAAG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	208
AhdI	GACNNNNNGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw26I	GTCTC	2 cut(s)	276, 278
AlwI	GGATC	2 cut(s)	143, 156
AoxI	GGCC	3 cut(s)	83, 297, 425
ApeKI	GCWGC	1 cut(s)	418
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	25, 376
AxyI	CCTNAGG	1 cut(s)	12
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	276, 278
BfaI	CTAG	2 cut(s)	111, 414
BfrI	CTTAAG	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	1 cut(s)	419
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	312
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	86, 150
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	101, 333
BpmI	CTGGAG	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 369, 393
Bse21I	CCTNAGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	3 cut(s)	81, 369, 393
BseMII	CTCAG	2 cut(s)	66, 243
BseXI	GCAGC	1 cut(s)	405
BshFI	GGCC	3 cut(s)	85, 299, 427
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	81, 369, 393
BsmAI	GTCTC	2 cut(s)	276, 278
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	3 cut(s)	85, 299, 427
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	148, 305, 406
Bsp1720I	GCTNAGC	1 cut(s)	52
BspACI	CCGC	2 cut(s)	161, 315
BspANI	GGCC	3 cut(s)	85, 299, 427
BspCNI	CTCAG	3 cut(s)	4, 65, 244
BspLI	GGNNCC	2 cut(s)	86, 150
BspPI	GGATC	2 cut(s)	143, 156
BspTI	CTTAAG	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	276
BssMI	GATC	3 cut(s)	148, 305, 406
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	332
BstACI	GRCGYC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	301
BstDEI	CTNAG	4 cut(s)	12, 52, 228, 252
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	3 cut(s)	151, 308, 409
BstMAI	GTCTC	2 cut(s)	276, 278
BstMBI	GATC	3 cut(s)	148, 305, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 424
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	2 cut(s)	28, 183
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	405
BstX2I	RGATCY	2 cut(s)	148, 305
BstYI	RGATCY	2 cut(s)	148, 305
Bsu36I	CCTNAGG	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	85, 299, 427
BtsCI	GGATG	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	8 cut(s)	25, 180, 189, 215, 244, 367, 391, 410
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	4 cut(s)	12, 52, 228, 252
DpnI	GATC	3 cut(s)	150, 307, 408
DpnII	GATC	3 cut(s)	148, 305, 406
DraIII	CACNNNGTG	1 cut(s)	369
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1105I	GACNNNNNGTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	8 cut(s)	28, 183, 192, 218, 247, 370, 394, 413
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	8 cut(s)	24, 179, 188, 214, 243, 366, 390, 409
FauI	CCCGC	2 cut(s)	168, 308
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	419
FspBI	CTAG	2 cut(s)	111, 414
GluI	GCNGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	85, 299, 427
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	8 cut(s)	28, 183, 192, 218, 247, 370, 394, 413
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	71, 248
HpaI	GTTAAC	1 cut(s)	123
HphI	GGTGA	2 cut(s)	25, 376
Hpy166II	GTNNAC	2 cut(s)	106, 123
Hpy188I	TCNGA	4 cut(s)	97, 153, 186, 253
Hpy188III	TCNNGA	3 cut(s)	11, 68, 340
Hpy8I	GTNNAC	2 cut(s)	106, 123
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	85, 289, 371
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	346, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 424
HpyF3I	CTNAG	4 cut(s)	12, 52, 228, 252
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	8 cut(s)	28, 183, 192, 218, 247, 370, 394, 413
Ksp22I	TGATCA	1 cut(s)	406
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	148, 305, 406
LpnPI	CCDG	5 cut(s)	24, 81, 297, 309, 324
Lsp1109I	GCAGC	1 cut(s)	405
LweI	GCATC	2 cut(s)	101, 333
MaeI	CTAG	2 cut(s)	111, 414
MaeII	ACGT	1 cut(s)	102
MalI	GATC	3 cut(s)	150, 307, 408
MboI	GATC	3 cut(s)	148, 305, 406
MfeI	CAATTG	2 cut(s)	203, 402
MflI	RGATCY	2 cut(s)	148, 305
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	203, 219, 402
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	4 cut(s)	7, 152, 169, 232
MseI	TTAA	2 cut(s)	122, 302
MslI	CAYNNNNRTG	2 cut(s)	365, 389
MspCI	CTTAAG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	2 cut(s)	203, 402
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	379, 424
NdeII	GATC	3 cut(s)	148, 305, 406
NlaIII	CATG	8 cut(s)	28, 183, 192, 218, 247, 370, 394, 413
NlaIV	GGNNCC	2 cut(s)	86, 150
NspI	RCATGY	2 cut(s)	28, 183
PceI	AGGCCT	1 cut(s)	299
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	86, 150
PspPI	GGNCC	1 cut(s)	84
PsuI	RGATCY	2 cut(s)	148, 305
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	2 cut(s)	365, 389
SaqAI	TTAA	2 cut(s)	122, 302
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	3 cut(s)	148, 305, 406
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	3 cut(s)	105, 144, 234
SfaNI	GCATC	2 cut(s)	101, 333
SmiMI	CAYNNNNRTG	2 cut(s)	365, 389
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	203, 219, 402
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	2 cut(s)	161, 315
SspMI	CTAG	2 cut(s)	111, 414
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	203, 219, 402
TatI	WGTACW	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	122, 302
Tru9I	TTAA	2 cut(s)	122, 302
TseI	GCWGC	1 cut(s)	418
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	2 cut(s)	161, 188
Van91I	CCANNNNNTGG	1 cut(s)	369
Vha464I	CTTAAG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	219
XceI	RCATGY	2 cut(s)	28, 183
XspI	CTAG	2 cut(s)	111, 414
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.