Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002540

Physical Location & Seq

Genomic Coordinates Forward (+)

31552136 .. 31553532

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG145700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAACTCCATCGGATCAAACCTACAAGCACATCATCCCCCTTGACTTTAACTCAGTGAAGTCGGTGCCGGACTCGTTTGTATGGCTTCAATCCAATGCCATTGAATCCGACGATGGGTTATCGATACCCGTTATCGACCTCATGGATCCAAATGCCCCGAAACTCATAGTTGAGGCATGTGAGACATGGGGTGTTTTCCATTTGAAAGACCATGGCATTCCAACAAAGATTATGGAGGACGTCGAGTCTGAGGCTCGAAAATTGTTTGATCTTCCCATCGACCAAAAACTGAAGGCTGTACGATCTCCCGATGGGCAGAGCGGATACGGAATCGTCCCAATGCAGTCCTTGTTTTCCACCTTTATGTGGCATGAAGGGCTTACCATCCTTGGCTCTGCAATTGATCATGCTAAGTTGAACTCTTACCCTCCATGCCCCGAACCAACCCGGACCTTGGGTCTAGCCCCGCACACAGACACCTCCGTTGTAACCATACTCCGAGCTAAAACCAGCGGTCTCCAAGTCTTCAAAGACGGAGTTGGGTGGATTCCGGTGGAACCGAACCCCGATGCACTCATCGTGAACCTTGGTGATTTCACCCGCATTCTATCCAACGGTCGATTTATCAGTGTTCTTCATCGTGTGGTGGCGAAACCGATCCAACGCTACTCAATGGGATACTTCTTTAGGCCCCCAATGGATTTTGATGTGTCACCACTTCTGACGAAAGATTTGGGTCAGGGACATGTTCCTCGGTATCGCCCAGTCACAGCAAAGGAGTATCTTGCTCTGAAGGCCAAGCATCTTGAAAAAGCATTTTCTCTCATTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

279

Amino Acids

31.05

Weight (kDa)

6.13

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 133	1.6e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	139 - 232	1.4e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30020 FvH4_2g30021 FvH4_2g30040
malus_domestica	MD08G1138400.v1.1 MD15G1116300.v1.1
prunus_persica	Prupe.1G467600_v2.0.a1 Prupe.1G467600_v2.0.a1 Prupe.1G467800_v2.0.a1
pyrus_communis	pycom08g11660 pycom15g10480
rosa_chinensis	RchiOBHm_Chr1g0337611 RchiOBHm_Chr6g0312151 RchiOBHm_Chr6g0312861
rosa_laevigata	RLG00000010291 RLG00000010350 RLG00000029265
rosa_multiflora	Rmu_co8006886.1_g000001 Rmu_co8436821.1_g000001 Rmu_sc0001215.1_g000020 Rmu_sc0008049.1_g000012
rosa_roxburghii	Rroxscaffold_4G00314130 Rroxscaffold_7G00156400 Rroxscaffold_7G00157010
rosa_rugosa	Rorug01G0136200.1 Rorug06G0393100 Rorug06G0400200
rosa_samantha	Rh1BG124500 Rh1CG145700 Rh1DG163600 Rh6AG510200 Rh6AG517400 Rh6BG521000 Rh6BG528900 Rh6CG527000 Rh6CG533500 Rh6DG512400 Rh6DG520000 Rh6DG520100
rosa_wichuraiana	Rw1G012780 Rw6G044380 Rw6G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	324
AciI	CCGC	4 cut(s)	324, 470, 516, 604
AclWI	GGATC	4 cut(s)	24, 143, 156, 655
AcuI	CTGAAG	2 cut(s)	314, 815
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	117, 369, 457
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	7 cut(s)	92, 107, 208, 421, 532, 812, 833
AhdI	GACNNNNNGTC	2 cut(s)	247, 459
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw26I	GTCTC	2 cut(s)	179, 524
AlwI	GGATC	4 cut(s)	24, 143, 156, 655
AoxI	GGCC	2 cut(s)	692, 798
ArsI	GACNNNNNNTTYG	2 cut(s)	718, 750
AspS9I	GGNCC	2 cut(s)	453, 693
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	592, 605, 708
AvaII	GGWCC	1 cut(s)	453
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	520
BccI	CCATC	5 cut(s)	19, 110, 287, 308, 395
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciVI	GTATCC	2 cut(s)	320, 674
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	179, 524
BfaI	CTAG	1 cut(s)	464
BfuI	GTATCC	2 cut(s)	320, 674
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	453
BmeRI	GACNNNNNGTC	2 cut(s)	247, 459
BmgT120I	GGNCC	2 cut(s)	453, 693
BmiI	GGNNCC	4 cut(s)	69, 150, 561, 695
BmrFI	CCNGG	1 cut(s)	451
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	2 cut(s)	562, 814
BmuI	ACTGGG	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	5 cut(s)	214, 391, 456, 589, 755
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 369, 457
Bse1I	ACTGG	1 cut(s)	767
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	5 cut(s)	214, 391, 456, 589, 755
BseGI	GGATG	2 cut(s)	36, 387
BseLI	CCNNNNNNNGG	3 cut(s)	117, 369, 457
BseMII	CTCAG	2 cut(s)	69, 243
BseNI	ACTGG	1 cut(s)	767
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	2 cut(s)	694, 800
BshNI	GGYRCC	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	622
BsiSI	CCGG	3 cut(s)	71, 451, 554
BslFI	GGGAC	2 cut(s)	323, 759
BslI	CCNNNNNNNGG	3 cut(s)	117, 369, 457
BsmAI	GTCTC	2 cut(s)	179, 524
BsmFI	GGGAC	2 cut(s)	323, 759
BsmI	GAATGC	2 cut(s)	219, 606
BsnI	GGCC	2 cut(s)	694, 800
Bso31I	GGTCTC	1 cut(s)	524
Bsp143I	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	4 cut(s)	324, 470, 516, 604
BspANI	GGCC	2 cut(s)	694, 800
BspCNI	CTCAG	2 cut(s)	68, 244
BspDI	ATCGAT	1 cut(s)	125
BspLI	GGNNCC	4 cut(s)	69, 150, 561, 695
BspPI	GGATC	4 cut(s)	24, 143, 156, 655
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	767
BssECI	CCNNGG	5 cut(s)	214, 391, 456, 589, 755
BssMI	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	4 cut(s)	214, 391, 456, 589
Bst4CI	ACNGT	1 cut(s)	620
BstACI	GRCGYC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	55, 252, 414
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	36, 387
BstKTI	GATC	6 cut(s)	19, 151, 274, 308, 409, 663
BstMAI	GTCTC	2 cut(s)	179, 524
BstMBI	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 797
BstNSI	RCATGY	2 cut(s)	183, 752
BstSCI	CCNGG	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	125
BsuI	GTATCC	2 cut(s)	320, 674
BsuRI	GGCC	2 cut(s)	694, 800
BsuTUI	ATCGAT	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	36, 387
BtsIMutI	CAGTG	2 cut(s)	63, 637
Cfr13I	GGNCC	2 cut(s)	453, 693
ClaI	ATCGAT	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	8 cut(s)	145, 180, 189, 215, 374, 410, 435, 749
CviJI	RGCY	9 cut(s)	88, 257, 299, 382, 396, 467, 506, 694, 800
CviKI_1	RGCY	9 cut(s)	88, 257, 299, 382, 396, 467, 506, 694, 800
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	3 cut(s)	55, 252, 414
DpnI	GATC	6 cut(s)	18, 150, 273, 307, 408, 662
DpnII	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
DriI	GACNNNNNGTC	2 cut(s)	247, 459
Eam1105I	GACNNNNNGTC	2 cut(s)	247, 459
Eco130I	CCWWGG	4 cut(s)	214, 391, 456, 589
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	453
Eco57I	CTGAAG	2 cut(s)	314, 815
EcoO109I	RGGNCCY	1 cut(s)	693
EcoT14I	CCWWGG	4 cut(s)	214, 391, 456, 589
ErhI	CCWWGG	4 cut(s)	214, 391, 456, 589
FaeI	CATG	8 cut(s)	148, 183, 192, 218, 377, 413, 438, 752
FaqI	GGGAC	2 cut(s)	323, 759
FatI	CATG	8 cut(s)	144, 179, 188, 214, 373, 409, 434, 748
FauI	CCCGC	2 cut(s)	477, 611
FbaI	TGATCA	1 cut(s)	406
FokI	GGATG	2 cut(s)	23, 374
FspBI	CTAG	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	694, 800
HapII	CCGG	3 cut(s)	71, 451, 554
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	8 cut(s)	148, 183, 192, 218, 377, 413, 438, 752
HinfI	GANTC	5 cut(s)	74, 107, 248, 333, 550
HpaII	CCGG	3 cut(s)	71, 451, 554
HphI	GGTGA	3 cut(s)	592, 605, 708
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	6 cut(s)	16, 112, 253, 503, 726, 795
Hpy188III	TCNNGA	3 cut(s)	311, 583, 809
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	2 cut(s)	116, 248
HpyAV	CCTTC	3 cut(s)	289, 371, 790
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	346, 401, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 797
HpyF3I	CTNAG	3 cut(s)	55, 252, 414
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	8 cut(s)	148, 183, 192, 218, 377, 413, 438, 752
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
LpnPI	CCDG	6 cut(s)	84, 464, 526, 567, 728, 780
LweI	GCATC	2 cut(s)	562, 814
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	3 cut(s)	490, 714, 769
MalI	GATC	6 cut(s)	18, 150, 273, 307, 408, 662
MbiI	CCGCTC	1 cut(s)	324
MboI	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
MboII	GAAGA	3 cut(s)	266, 520, 629
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	3 cut(s)	263, 402, 835
MlyI	GAGTC	2 cut(s)	68, 257
MmeI	TCCRAC	4 cut(s)	135, 248, 639, 688
MnlI	CCTC	7 cut(s)	152, 169, 232, 247, 441, 493, 765
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	516
MspI	CCGG	3 cut(s)	71, 451, 554
MspR9I	CCNGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	2 cut(s)	219, 606
MwoI	GCNNNNNNNGC	2 cut(s)	379, 797
NciI	CCSGG	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
NlaIII	CATG	8 cut(s)	148, 183, 192, 218, 377, 413, 438, 752
NlaIV	GGNNCC	4 cut(s)	69, 150, 561, 695
NmuCI	GTSAC	2 cut(s)	714, 769
NspI	RCATGY	2 cut(s)	183, 752
PciI	ACATGT	1 cut(s)	748
PctI	GAATGC	2 cut(s)	219, 606
PfeI	GAWTC	3 cut(s)	107, 333, 550
PleI	GAGTC	2 cut(s)	68, 256
PpsI	GAGTC	2 cut(s)	68, 256
PscI	ACATGT	1 cut(s)	748
PspN4I	GGNNCC	4 cut(s)	69, 150, 561, 695
PspPI	GGNCC	2 cut(s)	453, 693
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	16, 148, 271, 305, 406, 660
Sau96I	GGNCC	2 cut(s)	453, 693
SchI	GAGTC	2 cut(s)	68, 257
ScrFI	CCNGG	1 cut(s)	451
SetI	ASST	8 cut(s)	26, 144, 246, 365, 458, 485, 508, 591
SfaNI	GCATC	2 cut(s)	562, 814
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	263, 402, 835
SsiI	CCGC	4 cut(s)	324, 470, 516, 604
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	4 cut(s)	214, 391, 456, 589
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	6 cut(s)	125, 138, 246, 259, 282, 622
TasI	AATT	3 cut(s)	263, 402, 835
TfiI	GAWTC	3 cut(s)	107, 333, 550
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	2 cut(s)	63, 637
TseFI	GTSAC	2 cut(s)	714, 769
Tsp45I	GTSAC	2 cut(s)	714, 769
TspDTI	ATGAA	2 cut(s)	390, 629
TspGWI	ACGGA	3 cut(s)	345, 475, 552
TspRI	CASTG	2 cut(s)	63, 637
VpaK11BI	GGWCC	1 cut(s)	453
XceI	RCATGY	2 cut(s)	183, 752
XspI	CTAG	1 cut(s)	464
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.