pycom15g10480

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
6954658 .. 6956142
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10480.1

Sequence Viewer

Length: 1038 bp
ATGGGTGCTATGGCAGATCCCTATAGAGCTCATCTCCATCATATCATCCCTATCGACTTTAATTCAGTCCAGAAATTGCCTGAATCTCATGTATGGCATGATATATCTCACGAATCTTTGTTCGGGGTCCCCTCCGCCGACCCGTTACCCGTACCTGTCATCGACCTCATGGACTCGGAGGCTTCAAGTCTCATGATCCAGGCATGTGAGACATGGGGTATTTTTCAGGTGATAGGCCATGGCCTTACAAAGCTTATGGAGGATGTGGAGTTTGAAGCTGAAAAATTGTTTGGTCTCCCTGTTGACCAAAAACTGAAAGCCCTAAGATCTCCAGGTGGGGCCACTGGGTACGGTCGTCCTCATATATCGCCATTTTTTGACAGACATATGTGGCAGGAAGGGTTTACCATCATGGGGTCTCCAATCGATCATGCTAAGCAACTTTGGCCCCAAGACTATCAAGGCTTTTGTGACACAATAGATGATTACCAGAACCAAATGAAGGCTTTAGCAGAGAAACTAATCCGCATTTTCTTCAAATCCTTGAACATTAATTTTAAGGAACTGAATTGGCTTAATGACAGTGGGTTAAGTAGTCCAGGTACTGCCTTGCAACTAAACTCCTACCGGCCCTGCCCCGACCCAACCCGAGCCATGGGCATGGCAGCACACACAGACACATCCCTTGTCACCATTGTCCAACAATCCAAAACCAGCGGCCTCCAAGTCTTCAAAGATGGAGTCGGGTGGGTTCTGGTGCAACCAGTACCTGGTGCCCTAACAGTTAACCTTGGTGACTATCTCCACATTCTCTCCAATGGGATGTATACAAGTGTTCTTCATCGTGCGGTGGTGAACCAGCAGATCCAACGGTTTTCCATGGCCTACTTTTATGCTCCCCCAAGAGATTTTACTGTCTCCCCGGTTCTCTCTAGGGTTATGGGACAAATGCCAAAGTACCGTTCACTCACAGTAAAGGAGTATGTTGACATCAAGGGCAAGCATCTTGAAAAGGCACTTTCTTTGATTCAAATTTAG

Protein Analysis

346

Amino Acids

38.68

Weight (kDa)

6.26

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 51 - 151 3.7e-16 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 203 - 300 2e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 773
AccB7I CCANNNNNTGG 1 cut(s) 770
AccI GTMKAC 1 cut(s) 827
AciI CCGC 4 cut(s) 135, 526, 717, 848
AclWI GGATC 3 cut(s) 11, 190, 859
AcsI RAATTY 1 cut(s) 1032
AfaI GTAC 5 cut(s) 153, 350, 604, 768, 959
AfiI CCNNNNNNNGG 4 cut(s) 414, 502, 655, 770
AgsI TTSAA 7 cut(s) 186, 275, 538, 547, 733, 1010, 1031
AjnI CCWGG 4 cut(s) 198, 331, 598, 769
AjuI GAANNNNNNNTTGG 4 cut(s) 273, 305, 946, 978
AluBI AGCT 3 cut(s) 29, 253, 278
AluI AGCT 3 cut(s) 29, 253, 278
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 5 cut(s) 194, 203, 299, 423, 922
AlwI GGATC 3 cut(s) 11, 190, 859
AlwNI CAGNNNCTG 2 cut(s) 605, 770
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 7 cut(s) 235, 241, 339, 446, 629, 718, 882
ApeKI GCWGC 1 cut(s) 665
ApoI RAATTY 1 cut(s) 1032
ArsI GACNNNNNNTTYG 2 cut(s) 726, 758
AseI ATTAAT 1 cut(s) 552
AspS9I GGNCC 4 cut(s) 127, 339, 447, 630
AsuC2I CCSGG 1 cut(s) 923
AsuHPI GGTGA 4 cut(s) 241, 682, 806, 865
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 778
BaeI ACNNNNGTAYC 2 cut(s) 340, 373
BanI GGYRCC 1 cut(s) 773
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 721
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 677
BccI CCATC 3 cut(s) 45, 416, 731
BciT130I CCWGG 4 cut(s) 200, 333, 600, 771
BcnI CCSGG 1 cut(s) 923
BcoDI GTCTC 5 cut(s) 194, 203, 299, 423, 922
BfaI CTAG 1 cut(s) 933
BfmI CTRYAG 1 cut(s) 22
BglII AGATCT 1 cut(s) 326
BisI GCNGC 2 cut(s) 666, 718
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 2 cut(s) 667, 719
Bme1390I CCNGG 5 cut(s) 200, 333, 600, 771, 923
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 4 cut(s) 127, 339, 447, 630
BmiI GGNNCC 5 cut(s) 128, 129, 340, 449, 775
BmrFI CCNGG 5 cut(s) 200, 333, 600, 771, 923
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 1012
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 721
BplI GAGNNNNNCTC 2 cut(s) 18, 50
BpmI CTGGAG 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 923
Bsa29I ATCGAT 1 cut(s) 426
BsaI GGTCTC 2 cut(s) 299, 423
BsaJI CCNNGG 5 cut(s) 238, 654, 790, 879, 921
BsaXI ACNNNNNCTCC 2 cut(s) 797, 827
Bsc4I CCNNNNNNNGG 4 cut(s) 414, 502, 655, 770
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 2 cut(s) 349, 764
BseBI CCWGG 4 cut(s) 200, 333, 600, 771
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 5 cut(s) 238, 654, 790, 879, 921
BseGI GGATG 4 cut(s) 45, 268, 680, 828
BseLI CCNNNNNNNGG 4 cut(s) 414, 502, 655, 770
BseNI ACTGG 2 cut(s) 349, 764
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 1 cut(s) 677
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 7 cut(s) 237, 243, 341, 448, 631, 720, 884
BshNI GGYRCC 1 cut(s) 773
BshVI ATCGAT 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 2 cut(s) 628, 923
BslFI GGGAC 2 cut(s) 113, 957
BslI CCNNNNNNNGG 4 cut(s) 414, 502, 655, 770
BsmAI GTCTC 5 cut(s) 194, 203, 299, 423, 922
BsmFI GGGAC 2 cut(s) 113, 957
BsnI GGCC 7 cut(s) 237, 243, 341, 448, 631, 720, 884
Bso31I GGTCTC 2 cut(s) 299, 423
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 31, 778
Bsp143I GATC 5 cut(s) 16, 195, 326, 427, 864
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 3 cut(s) 238, 654, 879
BspACI CCGC 4 cut(s) 135, 526, 717, 848
BspANI GGCC 7 cut(s) 237, 243, 341, 448, 631, 720, 884
BspDI ATCGAT 1 cut(s) 426
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 5 cut(s) 128, 129, 340, 449, 775
BspPI GGATC 3 cut(s) 11, 190, 859
BspT107I GGYRCC 1 cut(s) 773
BspTNI GGTCTC 2 cut(s) 299, 423
BsrFI RCCGGY 1 cut(s) 627
BsrI ACTGG 2 cut(s) 349, 764
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 5 cut(s) 238, 654, 790, 879, 921
BssMI GATC 5 cut(s) 16, 195, 326, 427, 864
BssNAI GTATAC 1 cut(s) 828
BssT1I CCWWGG 4 cut(s) 238, 654, 790, 879
Bst1107I GTATAC 1 cut(s) 828
Bst2UI CCWGG 4 cut(s) 200, 333, 600, 771
Bst4CI ACNGT 7 cut(s) 353, 584, 784, 873, 916, 962, 973
BstC8I GCNNGC 1 cut(s) 1001
BstDEI CTNAG 2 cut(s) 323, 435
BstDSI CCRYGG 3 cut(s) 238, 654, 879
BstF5I GGATG 4 cut(s) 45, 268, 680, 828
BstKTI GATC 5 cut(s) 19, 198, 329, 430, 867
BstMAI GTCTC 5 cut(s) 194, 203, 299, 423, 922
BstMBI GATC 5 cut(s) 16, 195, 326, 427, 864
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstNI CCWGG 4 cut(s) 200, 333, 600, 771
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 5 cut(s) 198, 331, 598, 769, 921
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 778
BstV1I GCAGC 1 cut(s) 677
BstV2I GAAGAC 1 cut(s) 721
BstX2I RGATCY 3 cut(s) 16, 326, 864
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 3 cut(s) 16, 326, 864
BstZ17I GTATAC 1 cut(s) 828
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 7 cut(s) 237, 243, 341, 448, 631, 720, 884
BsuTUI ATCGAT 1 cut(s) 426
BtgI CCRYGG 3 cut(s) 238, 654, 879
BtsCI GGATG 4 cut(s) 45, 268, 680, 828
BtsIMutI CAGTG 2 cut(s) 342, 589
Cac8I GCNNGC 1 cut(s) 1001
CaiI CAGNNNCTG 2 cut(s) 605, 770
CciI TCATGA 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 4 cut(s) 127, 339, 447, 630
ClaI ATCGAT 1 cut(s) 426
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 5 cut(s) 152, 349, 603, 767, 958
CviQI GTAC 5 cut(s) 152, 349, 603, 767, 958
DdeI CTNAG 2 cut(s) 323, 435
DpnI GATC 5 cut(s) 18, 197, 328, 429, 866
DpnII GATC 5 cut(s) 16, 195, 326, 427, 864
EciI GGCGGA 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 29
Eco130I CCWWGG 4 cut(s) 238, 654, 790, 879
Eco24I GRGCYC 1 cut(s) 31
Eco31I GGTCTC 2 cut(s) 299, 423
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 4 cut(s) 198, 331, 598, 769
EcoT14I CCWWGG 4 cut(s) 238, 654, 790, 879
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 4 cut(s) 238, 654, 790, 879
FaqI GGGAC 2 cut(s) 113, 957
FauNDI CATATG 1 cut(s) 387
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 2 cut(s) 666, 718
FokI GGATG 4 cut(s) 32, 275, 667, 835
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 666, 718
FspBI CTAG 1 cut(s) 933
GluI GCNGC 2 cut(s) 666, 718
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 7 cut(s) 237, 243, 341, 448, 631, 720, 884
HapII CCGG 2 cut(s) 628, 923
HincII GTYRAC 3 cut(s) 304, 787, 988
HindII GTYRAC 3 cut(s) 304, 787, 988
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 5 cut(s) 83, 113, 173, 741, 1027
HpaI GTTAAC 1 cut(s) 787
HpaII CCGG 2 cut(s) 628, 923
HphI GGTGA 4 cut(s) 241, 682, 806, 865
Hpy166II GTNNAC 7 cut(s) 304, 405, 787, 828, 856, 965, 988
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 4 cut(s) 70, 110, 193, 1007
Hpy8I GTNNAC 7 cut(s) 304, 405, 787, 828, 856, 965, 988
HpyAV CCTTC 2 cut(s) 392, 496
HpyCH4III ACNGT 7 cut(s) 353, 584, 784, 873, 916, 962, 973
HpyCH4V TGCA 2 cut(s) 613, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
HpyF3I CTNAG 2 cut(s) 323, 435
KflI GGGWCCC 1 cut(s) 127
KspAI GTTAAC 1 cut(s) 787
Kzo9I GATC 5 cut(s) 16, 195, 326, 427, 864
LmnI GCTCC 1 cut(s) 901
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 1 cut(s) 1012
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 1 cut(s) 933
MaeIII GTNAC 4 cut(s) 144, 470, 688, 794
MalI GATC 5 cut(s) 18, 197, 328, 429, 866
MboI GATC 5 cut(s) 16, 195, 326, 427, 864
MboII GAAGA 3 cut(s) 526, 721, 830
MflI RGATCY 3 cut(s) 16, 326, 864
MhlI GDGCHC 2 cut(s) 31, 778
MluCI AATT 6 cut(s) 61, 74, 284, 553, 568, 1032
MlyI GAGTC 2 cut(s) 167, 750
MmeI TCCRAC 2 cut(s) 724, 892
MnlI CCTC 6 cut(s) 142, 172, 176, 253, 369, 731
MseI TTAA 6 cut(s) 60, 552, 558, 576, 590, 786
MslI CAYNNNNRTG 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 717
MspI CCGG 2 cut(s) 628, 923
MspR9I CCNGG 5 cut(s) 200, 333, 600, 771, 923
MvaI CCWGG 4 cut(s) 200, 333, 600, 771
MwoI GCNNNNNNNGC 1 cut(s) 445
NciI CCSGG 1 cut(s) 923
NcoI CCATGG 3 cut(s) 238, 654, 879
NdeI CATATG 1 cut(s) 387
NdeII GATC 5 cut(s) 16, 195, 326, 427, 864
NlaIV GGNNCC 5 cut(s) 128, 129, 340, 449, 775
NmuCI GTSAC 3 cut(s) 470, 688, 794
NspI RCATGY 1 cut(s) 207
PagI TCATGA 1 cut(s) 192
PfeI GAWTC 3 cut(s) 83, 113, 1027
PflMI CCANNNNNTGG 1 cut(s) 770
PkrI GCNGC 2 cut(s) 667, 719
PleI GAGTC 2 cut(s) 167, 749
PpsI GAGTC 2 cut(s) 167, 749
PpuMI RGGWCCY 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 4 cut(s) 198, 331, 598, 769
PspGI CCWGG 4 cut(s) 198, 331, 598, 769
PspN4I GGNNCC 5 cut(s) 128, 129, 340, 449, 775
PspPI GGNCC 4 cut(s) 127, 339, 447, 630
PspPPI RGGWCCY 1 cut(s) 127
PstNI CAGNNNCTG 2 cut(s) 605, 770
PsuI RGATCY 3 cut(s) 16, 326, 864
RsaI GTAC 5 cut(s) 153, 350, 604, 768, 959
RsaNI GTAC 5 cut(s) 152, 349, 603, 767, 958
RseI CAYNNNNRTG 1 cut(s) 659
SacI GAGCTC 1 cut(s) 31
SaqAI TTAA 6 cut(s) 60, 552, 558, 576, 590, 786
SatI GCNGC 2 cut(s) 666, 718
Sau3AI GATC 5 cut(s) 16, 195, 326, 427, 864
Sau96I GGNCC 4 cut(s) 127, 339, 447, 630
SchI GAGTC 2 cut(s) 167, 750
ScrFI CCNGG 5 cut(s) 200, 333, 600, 771, 923
SduI GDGCHC 2 cut(s) 31, 778
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 1 cut(s) 1012
SfcI CTRYAG 1 cut(s) 22
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 659
Sse9I AATT 6 cut(s) 61, 74, 284, 553, 568, 1032
SsiI CCGC 4 cut(s) 135, 526, 717, 848
SspMI CTAG 1 cut(s) 933
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 5 cut(s) 198, 331, 598, 769, 921
StyI CCWWGG 4 cut(s) 238, 654, 790, 879
TaaI ACNGT 7 cut(s) 353, 584, 784, 873, 916, 962, 973
TaqI TCGA 3 cut(s) 54, 162, 426
TasI AATT 6 cut(s) 61, 74, 284, 553, 568, 1032
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 3 cut(s) 83, 113, 1027
Tru1I TTAA 6 cut(s) 60, 552, 558, 576, 590, 786
Tru9I TTAA 6 cut(s) 60, 552, 558, 576, 590, 786
TscAI CASTG 2 cut(s) 349, 589
TseFI GTSAC 3 cut(s) 470, 688, 794
TseI GCWGC 1 cut(s) 665
Tsp45I GTSAC 3 cut(s) 470, 688, 794
TspDTI ATGAA 2 cut(s) 515, 830
TspRI CASTG 2 cut(s) 349, 589
Van91I CCANNNNNTGG 1 cut(s) 770
VpaK11BI GGWCC 1 cut(s) 127
VspI ATTAAT 1 cut(s) 552
XapI RAATTY 1 cut(s) 1032
XceI RCATGY 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 827
XspI CTAG 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.