FvH4_2g30040

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
23280065 .. 23282227
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30040.t1

Sequence Viewer

Length: 1062 bp
ATGGGTGCTCTAACTGCAGACTTCTCCAGAAACCATATCGTCCCTCTTGACTTTGCTTCAGTCCAGACCGTGCCTGAGTCTCATGTATGGTCCGAATCCGACGATGAATACCGGTGTCCTTCCGGCAGTACAGCTGACCCATGTTTATCTGTACCTATCATCGATCTCTGGGATCCGAATGCCACACATCTTATTTTCGAAGCATGTGAGAAATGGGGTGTTTTTCAGTTGACGGGTCATGGCATTCCGGCAAAGCTTATAGAGGAGGTGGAGGACAAGACGCAAAGGTTATTCTCTCTCCCCGTTGACCAGAAATTGAAGGTCCTAAGATCTCCGGGTGCCGGCACCGGGTACGGCCGGGCTATGATCTCGCCCTTCTTCCCAAAACATATGTGGCACGAGGGGTTTACTATCATGGGTTCTGCAGCAGATCATGCTAAGCATCTTTGGCCCCATGACTATGAAGAGTTTTGTGTTACAATGGATGAGTACCAGAAGCAAATGAAGGCACTAATCGAGCAACTAATCCACATTATATTGAAATCCTTGAACATTAGTTCCCAAAAATTGAGTTGGCTTAAGAGTCAGTGCTCTGGTCACTGTACTAGTACTACTCCAGGCACTGCTTTGCAGCTAAATTCTTACCCTCCCTGCCCAAACCCTAACCGAGCCATGGGGCTAGCACAACATACGGACACTTCCCTCGTCACCATACTCCAAGCTCAGACCAGCGGCCTCCAAATCTTCCGAGACGACGTAGGATGGATTTCGGTGCAACCCGTACGTGGTGCACTCACTGTTAATATTGGTGACTTCCTCCACATTCTCTCCAACGGCCGATTTGTTAACGTTCTTCATCGTGTGGTGGTGAACTCGATCCAACGCTTCTCAGCGGCCTACTTCTATGGTCCGCCTTCGGATTTTCTCATCTCGCCTCTTCTCTCCGAGACTTTGTGTGACTCGGAAGAAGCCGTTGCTCGGTATCGCTCTGTTACTGCTAAGGAGTTTATTGGTATGAAGGCCAAGCATCTCGACCGAACCCTTTCCTTGCTTAAAACTTAA

Protein Analysis

354

Amino Acids

39.31

Weight (kDa)

6.19

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 51 - 152 1e-19 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 209 - 304 1.2e-27 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 338, 344
AciI CCGC 3 cut(s) 732, 893, 911
AclI AACGTT 1 cut(s) 849
AclWI GGATC 3 cut(s) 167, 180, 871
AcoI YGGCCR 2 cut(s) 355, 835
AcsI RAATTY 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 7 cut(s) 130, 153, 353, 491, 604, 610, 783
AfiI CCNNNNNNNGG 5 cut(s) 341, 348, 673, 785, 978
AflII CTTAAG 1 cut(s) 578
AgeI ACCGGT 1 cut(s) 111
AgsI TTSAA 3 cut(s) 319, 541, 550
AhlI ACTAGT 1 cut(s) 605
AjnI CCWGG 1 cut(s) 616
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
AluBI AGCT 4 cut(s) 134, 256, 634, 722
AluI AGCT 4 cut(s) 134, 256, 634, 722
Alw21I GWGCWC 3 cut(s) 10, 593, 793
Alw26I GTCTC 3 cut(s) 84, 744, 941
Alw44I GTGCAC 1 cut(s) 789
AlwI GGATC 3 cut(s) 167, 180, 871
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 6 cut(s) 355, 449, 733, 835, 894, 1020
ApaLI GTGCAC 1 cut(s) 789
ApeKI GCWGC 2 cut(s) 425, 631
ApoI RAATTY 1 cut(s) 637
AsiGI ACCGGT 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 1042
AspS9I GGNCC 4 cut(s) 90, 322, 450, 908
AsuC2I CCSGG 3 cut(s) 336, 349, 359
AsuHPI GGTGA 3 cut(s) 700, 821, 880
AsuII TTCGAA 1 cut(s) 198
AsuNHI GCTAGC 1 cut(s) 679
AvaII GGWCC 3 cut(s) 90, 322, 908
BaeGI GKGCMC 1 cut(s) 793
BamHI GGATCC 1 cut(s) 172
BanI GGYRCC 2 cut(s) 338, 344
BauI CACGAG 1 cut(s) 398
Bbv12I GWGCWC 3 cut(s) 10, 593, 793
BbvI GCAGC 2 cut(s) 437, 643
BccI CCATC 1 cut(s) 756
BceAI ACGGC 3 cut(s) 370, 850, 956
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 3 cut(s) 336, 349, 359
BcoDI GTCTC 3 cut(s) 84, 744, 941
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 2 cut(s) 606, 680
BfmI CTRYAG 2 cut(s) 15, 423
BfrI CTTAAG 1 cut(s) 578
BglII AGATCT 1 cut(s) 329
BisI GCNGC 4 cut(s) 426, 632, 733, 894
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 4 cut(s) 427, 633, 734, 895
BmcAI AGTACT 1 cut(s) 610
Bme1390I CCNGG 4 cut(s) 336, 349, 359, 618
Bme18I GGWCC 3 cut(s) 90, 322, 908
BmgT120I GGNCC 4 cut(s) 90, 322, 450, 908
BmiI GGNNCC 4 cut(s) 174, 340, 346, 452
BmrFI CCNGG 4 cut(s) 336, 349, 359, 618
BmsI GCATC 2 cut(s) 451, 1036
BmtI GCTAGC 1 cut(s) 683
BpmI CTGGAG 2 cut(s) 10, 600
Bpu10I CCTNAGC 1 cut(s) 999
Bpu1102I GCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 198
BpuMI CCSGG 3 cut(s) 336, 349, 359
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 5 cut(s) 341, 348, 673, 785, 978
Bse118I RCCGGY 2 cut(s) 111, 341
BseBI CCWGG 1 cut(s) 618
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 2 cut(s) 490, 767
BseLI CCNNNNNNNGG 5 cut(s) 341, 348, 673, 785, 978
BseMII CTCAG 3 cut(s) 66, 737, 903
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 793
BseX3I CGGCCG 2 cut(s) 355, 835
BseXI GCAGC 2 cut(s) 437, 643
Bsh1285I CGRYCG 3 cut(s) 358, 838, 1036
BshFI GGCC 6 cut(s) 357, 451, 735, 837, 896, 1022
BshNI GGYRCC 2 cut(s) 338, 344
BshTI ACCGGT 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 162
BsiEI CGRYCG 3 cut(s) 358, 838, 1036
BsiHKAI GWGCWC 3 cut(s) 10, 593, 793
BsiSI CCGG 7 cut(s) 112, 123, 248, 335, 342, 348, 358
BsiWI CGTACG 1 cut(s) 781
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 5 cut(s) 341, 348, 673, 785, 978
BsmAI GTCTC 3 cut(s) 84, 744, 941
BsmBI CGTCTC 1 cut(s) 744
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 2 cut(s) 184, 243
BsnI GGCC 6 cut(s) 357, 451, 735, 837, 896, 1022
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 3 cut(s) 10, 593, 793
Bsp143I GATC 6 cut(s) 163, 172, 329, 366, 430, 876
Bsp1720I GCTNAGC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 3 cut(s) 732, 893, 911
BspANI GGCC 6 cut(s) 357, 451, 735, 837, 896, 1022
BspCNI CTCAG 3 cut(s) 67, 736, 902
BspDI ATCGAT 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 174, 340, 346, 452
BspMAI CTGCAG 2 cut(s) 19, 427
BspOI GCTAGC 1 cut(s) 683
BspPI GGATC 3 cut(s) 167, 180, 871
BspT104I TTCGAA 1 cut(s) 198
BspT107I GGYRCC 2 cut(s) 338, 344
BspTI CTTAAG 1 cut(s) 578
BsrFI RCCGGY 2 cut(s) 111, 341
BssAI RCCGGY 2 cut(s) 111, 341
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 6 cut(s) 163, 172, 329, 366, 430, 876
BssSI CACGAG 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 70, 602, 799
Bst6I CTCTTC 2 cut(s) 459, 942
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 785
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 343, 681
BstDEI CTNAG 6 cut(s) 75, 326, 438, 723, 889, 999
BstDSI CCRYGG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 490, 767
BstKTI GATC 6 cut(s) 166, 175, 332, 369, 433, 879
BstMAI GTCTC 3 cut(s) 84, 744, 941
BstMBI GATC 6 cut(s) 163, 172, 329, 366, 430, 876
BstMCI CGRYCG 3 cut(s) 358, 838, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 14, 434, 448
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 4 cut(s) 334, 347, 357, 616
BstSFI CTRYAG 2 cut(s) 15, 423
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 2 cut(s) 437, 643
BstX2I RGATCY 2 cut(s) 172, 329
BstYI RGATCY 2 cut(s) 172, 329
BstZI CGGCCG 2 cut(s) 355, 835
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 6 cut(s) 357, 451, 735, 837, 896, 1022
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 2 cut(s) 490, 767
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 4 cut(s) 593, 598, 621, 795
Cac8I GCNNGC 2 cut(s) 343, 681
CaiI CAGNNNCTG 1 cut(s) 623
Cfr10I RCCGGY 2 cut(s) 111, 341
Cfr13I GGNCC 4 cut(s) 90, 322, 450, 908
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 289
Csp6I GTAC 7 cut(s) 129, 152, 352, 490, 603, 609, 782
CspAI ACCGGT 1 cut(s) 111
CviAII CATG 8 cut(s) 83, 141, 204, 239, 415, 434, 455, 673
CviQI GTAC 7 cut(s) 129, 152, 352, 490, 603, 609, 782
DdeI CTNAG 6 cut(s) 75, 326, 438, 723, 889, 999
DpnI GATC 6 cut(s) 165, 174, 331, 368, 432, 878
DpnII GATC 6 cut(s) 163, 172, 329, 366, 430, 876
EaeI YGGCCR 2 cut(s) 355, 835
EagI CGGCCG 2 cut(s) 355, 835
Eam1104I CTCTTC 2 cut(s) 459, 942
EarI CTCTTC 2 cut(s) 459, 942
EciI GGCGGA 1 cut(s) 900
EclXI CGGCCG 2 cut(s) 355, 835
Eco130I CCWWGG 1 cut(s) 672
Eco47I GGWCC 3 cut(s) 90, 322, 908
Eco52I CGGCCG 2 cut(s) 355, 835
Eco57I CTGAAG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 8 cut(s) 86, 144, 207, 242, 418, 437, 458, 676
FaqI GGGAC 1 cut(s) 26
FatI CATG 8 cut(s) 82, 140, 203, 238, 414, 433, 454, 672
FauNDI CATATG 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 426, 632, 733, 894
FokI GGATG 2 cut(s) 497, 774
Fsp4HI GCNGC 4 cut(s) 426, 632, 733, 894
FspBI CTAG 2 cut(s) 606, 680
GluI GCNGC 4 cut(s) 426, 632, 733, 894
GsuI CTGGAG 2 cut(s) 10, 600
HaeIII GGCC 6 cut(s) 357, 451, 735, 837, 896, 1022
HapII CCGG 7 cut(s) 112, 123, 248, 335, 342, 348, 358
HgaI GACGC 1 cut(s) 289
Hin1II CATG 8 cut(s) 86, 144, 207, 242, 418, 437, 458, 676
HincII GTYRAC 3 cut(s) 231, 307, 847
HindII GTYRAC 3 cut(s) 231, 307, 847
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 4 cut(s) 77, 95, 583, 959
HpaI GTTAAC 1 cut(s) 847
HpaII CCGG 7 cut(s) 112, 123, 248, 335, 342, 348, 358
HphI GGTGA 3 cut(s) 700, 821, 880
Hpy166II GTNNAC 6 cut(s) 231, 307, 408, 791, 847, 871
Hpy188I TCNGA 8 cut(s) 94, 100, 177, 726, 749, 919, 946, 964
Hpy188III TCNNGA 4 cut(s) 27, 47, 64, 1031
Hpy8I GTNNAC 6 cut(s) 231, 307, 408, 791, 847, 871
Hpy99I CGWCG 2 cut(s) 104, 758
HpyAV CCTTC 6 cut(s) 129, 313, 385, 499, 924, 1012
HpyCH4III ACNGT 3 cut(s) 70, 602, 799
HpyCH4IV ACGT 3 cut(s) 756, 784, 849
HpyCH4V TGCA 5 cut(s) 17, 425, 631, 775, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 434, 448
HpyF3I CTNAG 6 cut(s) 75, 326, 438, 723, 889, 999
HpySE526I ACGT 3 cut(s) 756, 784, 849
Hsp92II CATG 8 cut(s) 86, 144, 207, 242, 418, 437, 458, 676
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 847
Kzo9I GATC 6 cut(s) 163, 172, 329, 366, 430, 876
Lsp1109I GCAGC 2 cut(s) 437, 643
LweI GCATC 2 cut(s) 451, 1036
MaeI CTAG 2 cut(s) 606, 680
MaeII ACGT 3 cut(s) 756, 784, 849
MaeIII GTNAC 6 cut(s) 475, 596, 706, 809, 956, 991
MalI GATC 6 cut(s) 165, 174, 331, 368, 432, 878
MboI GATC 6 cut(s) 163, 172, 329, 366, 430, 876
MboII GAAGA 6 cut(s) 370, 476, 736, 845, 929, 977
MflI RGATCY 2 cut(s) 172, 329
MhlI GDGCHC 3 cut(s) 10, 593, 793
MluCI AATT 3 cut(s) 314, 566, 637
MlyI GAGTC 3 cut(s) 86, 592, 953
MmeI TCCRAC 3 cut(s) 123, 855, 904
MroNI GCCGGC 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 1042
MseI TTAA 5 cut(s) 579, 801, 846, 1053, 1060
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 3 cut(s) 134, 732, 893
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 7 cut(s) 112, 123, 248, 335, 342, 348, 358
MspR9I CCNGG 4 cut(s) 336, 349, 359, 618
Mva1269I GAATGC 2 cut(s) 184, 243
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 3 cut(s) 14, 434, 448
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 3 cut(s) 336, 349, 359
NcoI CCATGG 1 cut(s) 672
NdeI CATATG 1 cut(s) 390
NdeII GATC 6 cut(s) 163, 172, 329, 366, 430, 876
NgoMIV GCCGGC 1 cut(s) 341
NheI GCTAGC 1 cut(s) 679
NlaIII CATG 8 cut(s) 86, 144, 207, 242, 418, 437, 458, 676
NlaIV GGNNCC 4 cut(s) 174, 340, 346, 452
NmuCI GTSAC 4 cut(s) 596, 706, 809, 956
NspI RCATGY 1 cut(s) 207
NspV TTCGAA 1 cut(s) 198
PctI GAATGC 2 cut(s) 184, 243
PdiI GCCGGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 1042
PfeI GAWTC 1 cut(s) 95
Pfl23II CGTACG 1 cut(s) 781
PinAI ACCGGT 1 cut(s) 111
PkrI GCNGC 4 cut(s) 427, 633, 734, 895
PleI GAGTC 3 cut(s) 85, 591, 953
PpsI GAGTC 3 cut(s) 85, 591, 953
Ppu21I YACGTR 1 cut(s) 785
PpuMI RGGWCCY 1 cut(s) 322
Psp1406I AACGTT 1 cut(s) 849
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspLI CGTACG 1 cut(s) 781
PspN4I GGNNCC 4 cut(s) 174, 340, 346, 452
PspPI GGNCC 4 cut(s) 90, 322, 450, 908
PspPPI RGGWCCY 1 cut(s) 322
PstI CTGCAG 2 cut(s) 19, 427
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 2 cut(s) 172, 329
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 7 cut(s) 130, 153, 353, 491, 604, 610, 783
RsaNI GTAC 7 cut(s) 129, 152, 352, 490, 603, 609, 782
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 5 cut(s) 579, 801, 846, 1053, 1060
SatI GCNGC 4 cut(s) 426, 632, 733, 894
Sau3AI GATC 6 cut(s) 163, 172, 329, 366, 430, 876
Sau96I GGNCC 4 cut(s) 90, 322, 450, 908
ScaI AGTACT 1 cut(s) 610
SchI GAGTC 3 cut(s) 86, 592, 953
ScrFI CCNGG 4 cut(s) 336, 349, 359, 618
SduI GDGCHC 3 cut(s) 10, 593, 793
SfaNI GCATC 2 cut(s) 451, 1036
SfcI CTRYAG 2 cut(s) 15, 423
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 3 cut(s) 90, 322, 908
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
SpeI ACTAGT 1 cut(s) 605
Sse9I AATT 3 cut(s) 314, 566, 637
SsiI CCGC 3 cut(s) 732, 893, 911
SspI AATATT 1 cut(s) 805
SspMI CTAG 2 cut(s) 606, 680
StyD4I CCNGG 4 cut(s) 334, 347, 357, 616
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 3 cut(s) 70, 602, 799
TaiI ACGT 3 cut(s) 759, 787, 852
TaqI TCGA 5 cut(s) 162, 198, 516, 875, 1032
TaqII GACCGA 1 cut(s) 1050
TasI AATT 3 cut(s) 314, 566, 637
TatI WGTACW 3 cut(s) 128, 602, 608
TauI GCSGC 2 cut(s) 735, 896
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 5 cut(s) 579, 801, 846, 1053, 1060
Tru9I TTAA 5 cut(s) 579, 801, 846, 1053, 1060
TscAI CASTG 4 cut(s) 593, 605, 628, 802
TseFI GTSAC 4 cut(s) 596, 706, 809, 956
TseI GCWGC 2 cut(s) 425, 631
Tsp45I GTSAC 4 cut(s) 596, 706, 809, 956
TspDTI ATGAA 5 cut(s) 120, 477, 518, 845, 1031
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 4 cut(s) 593, 605, 628, 802
Vha464I CTTAAG 1 cut(s) 578
VneI GTGCAC 1 cut(s) 789
VpaK11BI GGWCC 3 cut(s) 90, 322, 908
XapI RAATTY 1 cut(s) 637
XceI RCATGY 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 1042
XspI CTAG 2 cut(s) 606, 680
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.