Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8006886.1

Orthogroup ID

OG0002540

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 455

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8006886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

caaacagcagcggctgcaatctggctttacagctgaactcttaccctccatgccctgacccgacccgaaccttgggccttgcaccacacactgacacttccatagtaaccctactccaagctaaaaccagcggcctccaagtctttaaagacggagttgggtgggttgcggtgaaacccttacccgatgccctcattgtacatcttggtgatttcacccgcattctatccaatggtcaattcatcagtgttcttcatcgtgtggtggtgaaaccgatccaacgctactcagttggatacttctttaggccgccaatggattttgctgtgtcaccacttctgtcaaaggatttgggtccggaacaagttccgcggtatcgttcagtcacagcaaaggagtatcttgatctgaaggccaggcatcttgagaaagcattttctcttatcgaaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

150

Amino Acids

16.59

Weight (kDa)

9.2

Isoelectric Point (pI)

25.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30020 FvH4_2g30021 FvH4_2g30040
malus_domestica	MD08G1138400.v1.1 MD15G1116300.v1.1
prunus_persica	Prupe.1G467600_v2.0.a1 Prupe.1G467600_v2.0.a1 Prupe.1G467800_v2.0.a1
pyrus_communis	pycom08g11660 pycom15g10480
rosa_chinensis	RchiOBHm_Chr1g0337611 RchiOBHm_Chr6g0312151 RchiOBHm_Chr6g0312861
rosa_laevigata	RLG00000010291 RLG00000010350 RLG00000029265
rosa_multiflora	Rmu_co8006886.1_g000001 Rmu_co8436821.1_g000001 Rmu_sc0001215.1_g000020 Rmu_sc0008049.1_g000012
rosa_roxburghii	Rroxscaffold_4G00314130 Rroxscaffold_7G00156400 Rroxscaffold_7G00157010
rosa_rugosa	Rorug01G0136200.1 Rorug06G0393100 Rorug06G0400200
rosa_samantha	Rh1BG124500 Rh1CG145700 Rh1DG163600 Rh6AG510200 Rh6AG517400 Rh6BG521000 Rh6BG528900 Rh6CG527000 Rh6CG533500 Rh6DG512400 Rh6DG520000 Rh6DG520100
rosa_wichuraiana	Rw1G012780 Rw6G044380 Rw6G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	357
AciI	CCGC	7 cut(s)	11, 131, 169, 219, 310, 370, 372
AclWI	GGATC	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	430
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	2 cut(s)	33, 121
AluI	AGCT	2 cut(s)	33, 121
AlwI	GGATC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	4 cut(s)	75, 132, 307, 413
ApeKI	GCWGC	2 cut(s)	8, 14
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	75, 355
AsuHPI	GGTGA	5 cut(s)	183, 207, 220, 279, 323
AvaII	GGWCC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	417
BciVI	GTATCC	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	5 cut(s)	9, 12, 15, 132, 310
BlsI	GCNGC	5 cut(s)	10, 13, 16, 133, 311
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	75, 355
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	177, 429
BpuEI	CTTGAG	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	71, 370
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	71, 370
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	77, 134, 309, 415
BsiSI	CCGG	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	77, 134, 309, 415
Bsp13I	TCCGGA	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	275, 405
BspACI	CCGC	7 cut(s)	11, 131, 169, 219, 310, 370, 372
BspANI	GGCC	4 cut(s)	77, 134, 309, 415
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	71, 370
BssMI	GATC	2 cut(s)	275, 405
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	2 cut(s)	278, 408
BstMBI	GATC	2 cut(s)	275, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	77, 134, 309, 415
BtgI	CCRYGG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	89, 252
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	75, 355
Cfr42I	CCGCGG	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	8 cut(s)	14, 25, 33, 77, 121, 134, 309, 415
CviKI_1	RGCY	8 cut(s)	14, 25, 33, 77, 121, 134, 309, 415
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	277, 407
DpnII	GATC	2 cut(s)	275, 405
DraI	TTTAAA	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	53
FaiI	YATR	2 cut(s)	51, 103
FatI	CATG	1 cut(s)	49
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	9, 12, 15, 132, 310
Fsp4HI	GCNGC	5 cut(s)	9, 12, 15, 132, 310
GluI	GCNGC	5 cut(s)	9, 12, 15, 132, 310
HaeIII	GGCC	4 cut(s)	77, 134, 309, 415
HapII	CCGG	1 cut(s)	358
Hin1II	CATG	1 cut(s)	53
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	5 cut(s)	183, 207, 220, 279, 323
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	3 cut(s)	358, 403, 424
HpyAV	CCTTC	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	17, 82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	357
KspI	CCGCGG	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	275, 405
LpnPI	CCDG	6 cut(s)	7, 68, 141, 371, 402, 429
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	2 cut(s)	177, 429
MaeIII	GTNAC	3 cut(s)	105, 329, 384
MalI	GATC	2 cut(s)	277, 407
MboI	GATC	2 cut(s)	275, 405
MboII	GAAGA	1 cut(s)	244
MluCI	AATT	2 cut(s)	238, 450
MmeI	TCCRAC	2 cut(s)	273, 303
MnlI	CCTC	3 cut(s)	56, 145, 202
MroI	TCCGGA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	4 cut(s)	11, 33, 131, 372
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	275, 405
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	2 cut(s)	329, 384
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	10, 13, 16, 133, 311
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	2 cut(s)	75, 355
PstNI	CAGNNNCTG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	33
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	206
SacII	CCGCGG	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	5 cut(s)	9, 12, 15, 132, 310
Sau3AI	GATC	2 cut(s)	275, 405
Sau96I	GGNCC	2 cut(s)	75, 355
ScrFI	CCNGG	1 cut(s)	417
SetI	ASST	3 cut(s)	35, 73, 123
SfaNI	GCATC	2 cut(s)	177, 429
Sfr303I	CCGCGG	1 cut(s)	373
SgrBI	CCGCGG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	2 cut(s)	238, 450
SsiI	CCGC	7 cut(s)	11, 131, 169, 219, 310, 370, 372
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	71
TaqI	TCGA	1 cut(s)	446
TasI	AATT	2 cut(s)	238, 450
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	3 cut(s)	14, 134, 312
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	96, 252
TseFI	GTSAC	2 cut(s)	329, 384
TseI	GCWGC	2 cut(s)	8, 14
Tsp45I	GTSAC	2 cut(s)	329, 384
TspDTI	ATGAA	2 cut(s)	231, 244
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	96, 252
VpaK11BI	GGWCC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.