Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005221

Physical Location & Seq

Genomic Coordinates Forward (+)

23941154 .. 23941875

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGTTCCCTGAGTCATTCAGAGGTTTCAGGATTGGAATCCCCTTTGACCCACCATATTCTACAAATGATGGAGGACACCGAGGAATGTTCAGAACAACATTTAGCTCGGTTTCCTCTAAATTTCAAAGAAACCTAGAATCTGGTTCTGAGAGGATTAAGAAGTCATGGAAGTCCTATTCAATTGATGGGGTTGTCGGTAACAACTTTGGTTCTACAGTTCTTGATCCGCAAGGGCAATTCCTTCAGAAGTGGAATAAGATATTTGTATTGGCATGTGTTCTTGCTGTCTCTCTAGATCCTTTGTTCTTTTATGTCCCTGTTGTTGATGATGACAATAAGTGCCTTGACAAGGACAGAAAGATGGAGATAACAGCTAGTGTTTTGCGCTCATTCACCGACATATTTTATATAGTTCATATAATCTTTCAATTTCGTACTGGATTTATTGCCCCTCCTTCTCGAGTTTTTGGAAGAGGTGTTTTAGTTGGACTATTGCAAAGAGTTCATCATGTTCAAATGGCATGGTTATCTGGAGTGTGCGAATCACACAGTCCTACCGATGATAGCAACTCGGTCAAGACTCATCTGGCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

200

Amino Acids

22.45

Weight (kDa)

9.22

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53130
fragaria_vesca	FvH4_2g31110 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200
malus_domestica	MD01G1217100.v1.1 MD01G1217300.v1.1 MD07G1286700.v1.1
prunus_persica	Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1
pyrus_communis	pycom01g22750 pycom07g26000
rosa_chinensis	RchiOBHm_Chr1g0380261 RchiOBHm_Chr1g0380301
rosa_laevigata	RLG00000026314
rosa_multiflora	Rmu_sc0001232.1_g000031 Rmu_sc0002387.1_g000001 Rmu_sc0002387.1_g000009 Rmu_sc0003249.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279530
rosa_rugosa	Rorug01G0419600 Rorug01G0419700
rosa_samantha	Rh1AG444200 Rh1AG444300 Rh1CG412900
rosa_wichuraiana	Rw1G038580 Rw1G038650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	221, 293
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	128, 183, 431, 518
AluBI	AGCT	2 cut(s)	108, 377
AluI	AGCT	2 cut(s)	108, 377
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	221, 293
Ama87I	CYCGRG	1 cut(s)	462
AoxI	GGCC	1 cut(s)	591
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	462
BccI	CCATC	3 cut(s)	65, 182, 358
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	3 cut(s)	137, 296, 378
BfmI	CTRYAG	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	593
BsoBI	CYCGRG	1 cut(s)	462
Bsp143I	GATC	2 cut(s)	226, 298
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	2 cut(s)	4, 142
BspPI	GGATC	2 cut(s)	221, 293
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	226, 298
Bst4CI	ACNGT	2 cut(s)	220, 554
Bst6I	CTCTTC	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	12, 150
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	2 cut(s)	229, 301
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	226, 298
BstNSI	RCATGY	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	4 cut(s)	168, 276, 512, 525
CviJI	RGCY	3 cut(s)	108, 377, 593
CviKI_1	RGCY	3 cut(s)	108, 377, 593
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	12, 150
DpnI	GATC	2 cut(s)	228, 300
DpnII	GATC	2 cut(s)	226, 298
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	350
FaeI	CATG	4 cut(s)	171, 279, 515, 528
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	4 cut(s)	167, 275, 511, 524
FspBI	CTAG	3 cut(s)	137, 296, 378
GlaI	GCGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	171, 279, 515, 528
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	5 cut(s)	14, 39, 140, 545, 583
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	23, 95, 151, 249
Hpy188III	TCNNGA	6 cut(s)	31, 224, 296, 462, 534, 580
HpyAV	CCTTC	2 cut(s)	254, 468
HpyCH4III	ACNGT	2 cut(s)	220, 554
HpyCH4V	TGCA	1 cut(s)	499
HpyF3I	CTNAG	2 cut(s)	12, 150
Hsp92II	CATG	4 cut(s)	171, 279, 515, 528
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	226, 298
LpnPI	CCDG	7 cut(s)	16, 24, 129, 333, 426, 519, 575
MaeI	CTAG	3 cut(s)	137, 296, 378
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	228, 300
MboI	GATC	2 cut(s)	226, 298
MboII	GAAGA	1 cut(s)	486
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	4 cut(s)	122, 183, 239, 431
MlyI	GAGTC	2 cut(s)	23, 577
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	7 cut(s)	17, 68, 77, 127, 147, 465, 470
MseI	TTAA	1 cut(s)	159
MunI	CAATTG	1 cut(s)	183
NdeII	GATC	2 cut(s)	226, 298
NlaIII	CATG	4 cut(s)	171, 279, 515, 528
NspI	RCATGY	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	39, 140, 545
PleI	GAGTC	2 cut(s)	22, 577
PpsI	GAGTC	2 cut(s)	22, 577
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	226, 298
SchI	GAGTC	2 cut(s)	23, 577
SetI	ASST	5 cut(s)	28, 110, 138, 379, 481
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	462
SlaI	CTCGAG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	4 cut(s)	122, 183, 239, 431
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	137, 296, 378
TaaI	ACNGT	2 cut(s)	220, 554
TaqI	TCGA	1 cut(s)	463
TaqII	GACCGA	1 cut(s)	565
TasI	AATT	4 cut(s)	122, 183, 239, 431
TfiI	GAWTC	3 cut(s)	39, 140, 545
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	17, 407, 497
XagI	CCTNNNNNAGG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	1 cut(s)	279
XhoI	CTCGAG	1 cut(s)	462
XspI	CTAG	3 cut(s)	137, 296, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.