Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001232.1

Orthogroup ID

OG0005221

Physical Location & Seq

Genomic Coordinates Forward (+)

132138 .. 134158

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001232.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgaattttcagcaagagaagatggtcaggtttcaggattggaatccagagaaacctattgatccaccatattctccaaatgatggaatgcagcgaggaaatttcagaacaacatttagctcggtttcatctaaattccaaagacgcctggaatctggttctgagaggattaagaagtcatggaagtcctattcgattgatggggttgttggtaaaagcttttgttctagagttcttgatccgcaagggcaattccttcaaaagtggaataagatatttgtattggcatgtgtaattgctgtctccctggatcctttgttcttttacgtccctgtgattgatgatgacaataagtgccttgacaaggacagaaagatggagataacagctagtgttttgcgctcattcaccgacatattttatgtagttcatataatttttcaatttcgtactggatttattgctcctccttctcgagtttttggaagaggtgttttagttgaagatgcttgggctattgcaaagaggtatctatcctcatacttcctaattgacattcttgctgtccttcctctcccacaggttgtcattttaatttttattccaaaattgggaggctcagcatcattgaatacaaagaatttgttgaagtttgttgttttgttccaatacgtgccaagagttattcgtatatatccattgtatagagaagtaacaagggcttctggcatacttacggaaactgcatgggcaggcgcagcatttaatcttttcctttacatgcttgctagtcatgtacttggagcattttggtatttaatttctttagaacgagaaaccacatgctggaaacaagcttgtggaatgaattcaaccatatgctcccgaaaggatttatactgtgataccggggggaggcatcctaataagacagcattcttaaattcttcatgcccaatactagaagaagataaaacaaaatttgattttggaatattccttgatggtcttcaatctggtatcgttcagtcagacacagactttcctcaaaagttcttttactgcttttggtggggattacggaatttgaggtgtgcttatacaactttgcttagtggggttgatttttgtagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

378

Amino Acids

43.33

Weight (kDa)

9.02

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53130
fragaria_vesca	FvH4_2g31110 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200
malus_domestica	MD01G1217100.v1.1 MD01G1217300.v1.1 MD07G1286700.v1.1
prunus_persica	Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1
pyrus_communis	pycom01g22750 pycom07g26000
rosa_chinensis	RchiOBHm_Chr1g0380261 RchiOBHm_Chr1g0380301
rosa_laevigata	RLG00000026314
rosa_multiflora	Rmu_sc0001232.1_g000031 Rmu_sc0002387.1_g000001 Rmu_sc0002387.1_g000009 Rmu_sc0003249.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279530
rosa_rugosa	Rorug01G0419600 Rorug01G0419700
rosa_samantha	Rh1AG444200 Rh1AG444300 Rh1CG412900
rosa_wichuraiana	Rw1G038580 Rw1G038650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	83, 846
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	4 cut(s)	56, 233, 305, 318
AcsI	RAATTY	8 cut(s)	4, 100, 134, 640, 868, 943, 980, 1084
AcyI	GRCGYC	1 cut(s)	145
AfaI	GTAC	2 cut(s)	451, 798
AfiI	CCNNNNNNNGG	5 cut(s)	83, 364, 611, 846, 915
AgsI	TTSAA	7 cut(s)	260, 443, 503, 631, 649, 873, 1013
AjnI	CCWGG	2 cut(s)	147, 306
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	120, 219, 389, 857
AluI	AGCT	4 cut(s)	120, 219, 389, 857
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	4 cut(s)	56, 233, 305, 318
Ama87I	CYCGRG	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	91, 758
ApoI	RAATTY	8 cut(s)	4, 100, 134, 640, 868, 943, 980, 1084
Asp700I	GAANNNNTTC	1 cut(s)	868
AspLEI	GCGC	2 cut(s)	402, 758
AsuC2I	CCSGG	1 cut(s)	910
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	474
BamHI	GGATCC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	1001
BbvI	GCAGC	2 cut(s)	103, 770
BccI	CCATC	5 cut(s)	16, 77, 194, 370, 998
BciT130I	CCWGG	2 cut(s)	149, 308
BcnI	CCSGG	1 cut(s)	910
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	4 cut(s)	228, 390, 789, 962
BisI	GCNGC	2 cut(s)	92, 759
BlpI	GCTNAGC	1 cut(s)	619
BlsI	GCNGC	2 cut(s)	93, 760
Bme1390I	CCNGG	3 cut(s)	149, 308, 910
BmeT110I	CYCGRG	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	3 cut(s)	149, 308, 910
BmsI	GCATC	3 cut(s)	496, 632, 928
BpiI	GAAGAC	1 cut(s)	1001
Bpu1102I	GCTNAGC	1 cut(s)	619
BpuMI	CCSGG	1 cut(s)	910
BsaAI	YACGTR	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	306, 909
Bsc4I	CCNNNNNNNGG	5 cut(s)	83, 364, 611, 846, 915
Bse1I	ACTGG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	149, 308
BseDI	CCNNGG	2 cut(s)	306, 909
BseGI	GGATG	1 cut(s)	919
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	5 cut(s)	83, 364, 611, 846, 915
BseMII	CTCAG	2 cut(s)	153, 633
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	103, 770
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	909
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	5 cut(s)	83, 364, 611, 846, 915
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	2 cut(s)	93, 935
BsoBI	CYCGRG	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	61, 238, 310
Bsp1720I	GCTNAGC	1 cut(s)	619
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	2 cut(s)	154, 632
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	4 cut(s)	56, 233, 305, 318
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	306, 909
BssMI	GATC	3 cut(s)	61, 238, 310
BssNI	GRCGYC	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	149, 308
Bst4CI	ACNGT	1 cut(s)	902
Bst6I	CTCTTC	1 cut(s)	481
BstACI	GRCGYC	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	2 cut(s)	754, 786
BstDEI	CTNAG	3 cut(s)	162, 619, 1112
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	919
BstHHI	GCGC	2 cut(s)	402, 758
BstKTI	GATC	3 cut(s)	64, 241, 313
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	61, 238, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	2 cut(s)	149, 308
BstNSI	RCATGY	3 cut(s)	291, 784, 846
BstSCI	CCNGG	3 cut(s)	147, 306, 908
BstV1I	GCAGC	2 cut(s)	103, 770
BstV2I	GAAGAC	1 cut(s)	1001
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	919
Cac8I	GCNNGC	2 cut(s)	754, 786
CfoI	GCGC	2 cut(s)	402, 758
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	450, 797
CviAII	CATG	7 cut(s)	180, 288, 747, 781, 794, 843, 951
CviJI	RGCY	7 cut(s)	120, 219, 389, 515, 618, 722, 857
CviKI_1	RGCY	7 cut(s)	120, 219, 389, 515, 618, 722, 857
CviQI	GTAC	2 cut(s)	450, 797
DdeI	CTNAG	3 cut(s)	162, 619, 1112
DpnI	GATC	3 cut(s)	63, 240, 312
DpnII	GATC	3 cut(s)	61, 238, 310
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	868
EcoRII	CCWGG	2 cut(s)	147, 306
FaeI	CATG	7 cut(s)	183, 291, 750, 784, 797, 846, 954
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	7 cut(s)	179, 287, 746, 780, 793, 842, 950
FauNDI	CATATG	1 cut(s)	878
Fnu4HI	GCNGC	2 cut(s)	92, 759
FokI	GGATG	1 cut(s)	906
Fsp4HI	GCNGC	2 cut(s)	92, 759
FspBI	CTAG	4 cut(s)	228, 390, 789, 962
GlaI	GCGC	2 cut(s)	401, 757
GluI	GCNGC	2 cut(s)	92, 759
HapII	CCGG	1 cut(s)	909
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	2 cut(s)	402, 758
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	7 cut(s)	183, 291, 750, 784, 797, 846, 954
Hin6I	GCGC	2 cut(s)	400, 756
HinP1I	GCGC	2 cut(s)	400, 756
HindIII	AAGCTT	2 cut(s)	217, 855
HinfI	GANTC	2 cut(s)	43, 152
HpaII	CCGG	1 cut(s)	909
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	3 cut(s)	107, 163, 1033
Hpy188III	TCNNGA	6 cut(s)	35, 47, 228, 236, 474, 885
HpyAV	CCTTC	3 cut(s)	266, 480, 578
HpyCH4III	ACNGT	1 cut(s)	902
HpyCH4IV	ACGT	2 cut(s)	327, 672
HpyCH4V	TGCA	3 cut(s)	91, 521, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	3 cut(s)	162, 619, 1112
HpySE526I	ACGT	2 cut(s)	327, 672
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	7 cut(s)	183, 291, 750, 784, 797, 846, 954
HspAI	GCGC	2 cut(s)	400, 756
Kzo9I	GATC	3 cut(s)	61, 238, 310
LmnI	GCTCC	3 cut(s)	469, 803, 887
Lsp1109I	GCAGC	2 cut(s)	103, 770
LweI	GCATC	3 cut(s)	496, 632, 928
MaeI	CTAG	4 cut(s)	228, 390, 789, 962
MaeII	ACGT	2 cut(s)	327, 672
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	3 cut(s)	63, 240, 312
MboI	GATC	3 cut(s)	61, 238, 310
MboII	GAAGA	7 cut(s)	31, 498, 515, 939, 977, 980, 1001
MflI	RGATCY	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	868
MseI	TTAA	5 cut(s)	171, 593, 765, 818, 941
MspI	CCGG	1 cut(s)	909
MspR9I	CCNGG	3 cut(s)	149, 308, 910
Mva1269I	GAATGC	2 cut(s)	93, 935
MvaI	CCWGG	2 cut(s)	149, 308
MwoI	GCNNNNNNNGC	1 cut(s)	758
NciI	CCSGG	1 cut(s)	910
NdeI	CATATG	1 cut(s)	878
NdeII	GATC	3 cut(s)	61, 238, 310
NlaIII	CATG	7 cut(s)	183, 291, 750, 784, 797, 846, 954
NlaIV	GGNNCC	1 cut(s)	312
NspI	RCATGY	3 cut(s)	291, 784, 846
PaeR7I	CTCGAG	1 cut(s)	474
PctI	GAATGC	2 cut(s)	93, 935
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	43, 152
PflMI	CCANNNNNTGG	2 cut(s)	83, 846
PkrI	GCNGC	2 cut(s)	93, 760
Ppu21I	YACGTR	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	147, 306
PspGI	CCWGG	2 cut(s)	147, 306
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	451, 798
RsaNI	GTAC	2 cut(s)	450, 797
SaqAI	TTAA	5 cut(s)	171, 593, 765, 818, 941
SatI	GCNGC	2 cut(s)	92, 759
Sau3AI	GATC	3 cut(s)	61, 238, 310
ScrFI	CCNGG	3 cut(s)	149, 308, 910
SfaNI	GCATC	3 cut(s)	496, 632, 928
Sfr274I	CTCGAG	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
SsiI	CCGC	1 cut(s)	242
SspI	AATATT	1 cut(s)	996
SspMI	CTAG	4 cut(s)	228, 390, 789, 962
StyD4I	CCNGG	3 cut(s)	147, 306, 908
TaaI	ACNGT	1 cut(s)	902
TaiI	ACGT	2 cut(s)	330, 675
TaqI	TCGA	2 cut(s)	194, 475
TatI	WGTACW	1 cut(s)	796
TfiI	GAWTC	2 cut(s)	43, 152
Tru1I	TTAA	5 cut(s)	171, 593, 765, 818, 941
Tru9I	TTAA	5 cut(s)	171, 593, 765, 818, 941
TseI	GCWGC	2 cut(s)	91, 758
TspDTI	ATGAA	5 cut(s)	17, 117, 419, 881, 939
TspGWI	ACGGA	2 cut(s)	752, 1096
Van91I	CCANNNNNTGG	2 cut(s)	83, 846
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	8 cut(s)	4, 100, 134, 640, 868, 943, 980, 1084
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	3 cut(s)	291, 784, 846
XhoI	CTCGAG	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	4 cut(s)	228, 390, 789, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.