Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003249.1

Orthogroup ID

OG0005221

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 868

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ttgatctgtaatcttccgaaggaccttagaagggacataaagcgccatctctgcttggctctactaatgagggtgccaatgtttgagaaaatggatgaccaattgttggatgcaatgtgtgaccgtctcaagccagtactgtatactgaagacagctacattgttcgggagggagacccagtggatgaaatgctcttcataatgcgaggcaagctattgactatgaccacaaatggtggaaggactgggttcttcaattctgaatatctcaaggccggtgatttctgtggtgaagagcttctcacatgggctcttgatcctcacacctcttctaatcttcccatctcaactagaactgtccaagcccttagtgaagtcgaagcctttgctttgaaagcagatgatttgaagtttgtagcctcccagtttcgacggcttcacagcaagcagctccgccacacattcaggttttactctcaacagtggaggacttgggcggcttgctttattcaggcagcatggcgtcgttatagtaagaagaagcttgaagagtctctgcgggaagaggagaataggttgcaagatgcacttgcgaaggcagagacaagctcccctagtcttggtgccaccatttatgcctcgcgattcgctgctaatgtacttcgcgctgtacggctgcggcgcagtggtacacgcaagggaagggtgccagagagaacaccgcccatgctacttcagaagccagcagagccggattttactgctgaagaacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

258

Amino Acids

29.8

Weight (kDa)

9.2

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53130
fragaria_vesca	FvH4_2g31110 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200
malus_domestica	MD01G1217100.v1.1 MD01G1217300.v1.1 MD07G1286700.v1.1
prunus_persica	Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1
pyrus_communis	pycom01g22750 pycom07g26000
rosa_chinensis	RchiOBHm_Chr1g0380261 RchiOBHm_Chr1g0380301
rosa_laevigata	RLG00000026314
rosa_multiflora	Rmu_sc0001232.1_g000031 Rmu_sc0002387.1_g000001 Rmu_sc0002387.1_g000009 Rmu_sc0003249.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279530
rosa_rugosa	Rorug01G0419600 Rorug01G0419700
rosa_samantha	Rh1AG444200 Rh1AG444300 Rh1CG412900
rosa_wichuraiana	Rw1G038580 Rw1G038650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	73, 623, 706
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	2 cut(s)	643, 666
AciI	CCGC	5 cut(s)	454, 497, 559, 679, 722
AclWI	GGATC	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	168, 719
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	4 cut(s)	138, 660, 672, 691
AfiI	CCNNNNNNNGG	3 cut(s)	31, 106, 620
AgsI	TTSAA	4 cut(s)	256, 394, 409, 548
AluBI	AGCT	6 cut(s)	156, 214, 298, 451, 544, 609
AluI	AGCT	6 cut(s)	156, 214, 298, 451, 544, 609
Alw26I	GTCTC	4 cut(s)	131, 168, 558, 596
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	448, 515, 650, 676
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	3 cut(s)	45, 668, 684
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	290, 302
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	3 cut(s)	73, 623, 706
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	460, 527, 637, 663
BccI	CCATC	2 cut(s)	54, 350
BceAI	ACGGC	2 cut(s)	449, 689
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BcoDI	GTCTC	4 cut(s)	131, 168, 558, 596
BfaI	CTAG	2 cut(s)	351, 615
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	6 cut(s)	449, 498, 516, 651, 677, 680
BlsI	GCNGC	6 cut(s)	450, 499, 517, 652, 678, 681
BmcAI	AGTACT	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	75, 625, 708
BmrI	ACTGGG	3 cut(s)	173, 255, 418
BmsI	GCATC	2 cut(s)	100, 574
BmuI	ACTGGG	3 cut(s)	173, 255, 418
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpuEI	CTTGAG	2 cut(s)	113, 254
BsaHI	GRCGYC	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 560, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 106, 620
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	4 cut(s)	134, 179, 250, 424
Bse3DI	GCAATG	1 cut(s)	120
BseGI	GGATG	3 cut(s)	100, 115, 190
BseLI	CCNNNNNNNGG	3 cut(s)	31, 106, 620
BseMI	GCAATG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	134, 179, 250, 424
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	4 cut(s)	460, 527, 637, 663
Bsh1236I	CGCG	2 cut(s)	643, 666
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	3 cut(s)	73, 623, 706
BsiSI	CCGG	2 cut(s)	276, 752
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	31, 106, 620
BsmAI	GTCTC	4 cut(s)	131, 168, 558, 596
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	3, 316
Bsp68I	TCGCGA	1 cut(s)	643
BspACI	CCGC	5 cut(s)	454, 497, 559, 679, 722
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	2 cut(s)	643, 666
BspLI	GGNNCC	3 cut(s)	75, 625, 708
BspPI	GGATC	1 cut(s)	311
BspQI	GCTCTTC	2 cut(s)	200, 288
BspT107I	GGYRCC	3 cut(s)	73, 623, 706
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	4 cut(s)	134, 179, 250, 424
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	2 cut(s)	3, 316
BssNAI	GTATAC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	523
Bst1107I	GTATAC	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	125, 141, 358, 483
Bst6I	CTCTTC	5 cut(s)	200, 288, 334, 543, 558
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	4 cut(s)	212, 446, 502, 744
BstDEI	CTNAG	2 cut(s)	26, 368
BstF5I	GGATG	3 cut(s)	100, 115, 190
BstFNI	CGCG	2 cut(s)	643, 666
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	3 cut(s)	45, 668, 684
BstKTI	GATC	2 cut(s)	6, 319
BstMAI	GTCTC	4 cut(s)	131, 168, 558, 596
BstMBI	GATC	2 cut(s)	3, 316
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 211, 395, 748
BstUI	CGCG	2 cut(s)	643, 666
BstV1I	GCAGC	4 cut(s)	460, 527, 637, 663
BstV2I	GAAGAC	1 cut(s)	156
BstZ17I	GTATAC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	100, 115, 190
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	186, 488, 691
BtuMI	TCGCGA	1 cut(s)	643
Cac8I	GCNNGC	4 cut(s)	212, 446, 502, 744
CfoI	GCGC	3 cut(s)	45, 668, 684
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	4 cut(s)	137, 659, 671, 690
CviAII	CATG	3 cut(s)	306, 519, 727
CviQI	GTAC	4 cut(s)	137, 659, 671, 690
DdeI	CTNAG	2 cut(s)	26, 368
DpnI	GATC	2 cut(s)	5, 318
DpnII	GATC	2 cut(s)	3, 316
Eam1104I	CTCTTC	5 cut(s)	200, 288, 334, 543, 558
EarI	CTCTTC	5 cut(s)	200, 288, 334, 543, 558
EciI	GGCGGA	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	168, 719
EcoO109I	RGGNCCY	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	309, 522, 730
FaiI	YATR	9 cut(s)	38, 144, 200, 224, 307, 520, 531, 636, 728
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	305, 518, 726
FauI	CCCGC	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	6 cut(s)	449, 498, 516, 651, 677, 680
FokI	GGATG	3 cut(s)	107, 122, 197
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	6 cut(s)	449, 498, 516, 651, 677, 680
FspBI	CTAG	2 cut(s)	351, 615
GlaI	GCGC	3 cut(s)	44, 667, 683
GluI	GCNGC	6 cut(s)	449, 498, 516, 651, 677, 680
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	276, 752
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	3 cut(s)	45, 668, 684
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	3 cut(s)	309, 522, 730
Hin6I	GCGC	3 cut(s)	43, 666, 682
HinP1I	GCGC	3 cut(s)	43, 666, 682
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	2 cut(s)	551, 645
HpaII	CCGG	2 cut(s)	276, 752
HphI	GGTGA	2 cut(s)	290, 302
Hpy166II	GTNNAC	2 cut(s)	144, 692
Hpy188I	TCNGA	3 cut(s)	18, 262, 738
Hpy188III	TCNNGA	3 cut(s)	167, 314, 642
Hpy8I	GTNNAC	2 cut(s)	144, 692
Hpy99I	CGWCG	2 cut(s)	435, 528
HpyAV	CCTTC	5 cut(s)	13, 24, 234, 589, 696
HpyCH4III	ACNGT	4 cut(s)	125, 141, 358, 483
HpyCH4V	TGCA	3 cut(s)	113, 580, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 211, 395, 748
HpyF3I	CTNAG	2 cut(s)	26, 368
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	3 cut(s)	309, 522, 730
HspAI	GCGC	3 cut(s)	43, 666, 682
Kzo9I	GATC	2 cut(s)	3, 316
LguI	GCTCTTC	2 cut(s)	200, 288
LmnI	GCTCC	2 cut(s)	456, 614
Lsp1109I	GCAGC	4 cut(s)	460, 527, 637, 663
LweI	GCATC	2 cut(s)	100, 574
MaeI	CTAG	2 cut(s)	351, 615
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	5, 318
MboI	GATC	2 cut(s)	3, 316
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	2 cut(s)	101, 256
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	63, 163, 200, 330, 337, 430, 480, 559, 649
MroXI	GAANNNNTTC	1 cut(s)	297
MspI	CCGG	2 cut(s)	276, 752
MunI	CAATTG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	643, 666
MwoI	GCNNNNNNNGC	4 cut(s)	51, 211, 395, 748
NdeII	GATC	2 cut(s)	3, 316
NlaIII	CATG	3 cut(s)	309, 522, 730
NlaIV	GGNNCC	3 cut(s)	75, 625, 708
NmuCI	GTSAC	1 cut(s)	119
NruI	TCGCGA	1 cut(s)	643
PciSI	GCTCTTC	2 cut(s)	200, 288
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	645
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	6 cut(s)	450, 499, 517, 652, 678, 681
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	75, 625, 708
PspPI	GGNCC	1 cut(s)	22
PspPPI	RGGWCCY	1 cut(s)	22
RruI	TCGCGA	1 cut(s)	643
RsaI	GTAC	4 cut(s)	138, 660, 672, 691
RsaNI	GTAC	4 cut(s)	137, 659, 671, 690
SapI	GCTCTTC	2 cut(s)	200, 288
SatI	GCNGC	6 cut(s)	449, 498, 516, 651, 677, 680
Sau3AI	GATC	2 cut(s)	3, 316
Sau96I	GGNCC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	138
SchI	GAGTC	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	100, 574
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	128, 269
SmoI	CTYRAG	2 cut(s)	128, 269
Sse9I	AATT	2 cut(s)	101, 256
SsiI	CCGC	5 cut(s)	454, 497, 559, 679, 722
SspMI	CTAG	2 cut(s)	351, 615
TaaI	ACNGT	4 cut(s)	125, 141, 358, 483
TaqI	TCGA	2 cut(s)	378, 430
TasI	AATT	2 cut(s)	101, 256
TatI	WGTACW	2 cut(s)	136, 658
TauI	GCSGC	2 cut(s)	500, 682
TfiI	GAWTC	1 cut(s)	645
TscAI	CASTG	3 cut(s)	186, 488, 691
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	4 cut(s)	448, 515, 650, 676
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	187, 201
TspRI	CASTG	3 cut(s)	186, 488, 691
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	2 cut(s)	351, 615
ZrmI	AGTACT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.