Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005221

Physical Location & Seq

Genomic Coordinates Forward (+)

66485744 .. 66486319

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCGAGGCAAGCTATTGACTATGACCACAAATGGTGGAAGGACTGGGTTCTTCAATTCTGAATATCTCAAGGCCGGTGACTTCTGTGGTGAAGAGCTTCTCACATGGGCTCTTGATCCTCACACCTCTTCTAATCTTCCCATCTCAACTAGAACTGTCCAAGCCCTTAGTGAAGTCGAAGCCTTTGCTTTGAAAGCAGATGATCTGAAGTTTGTAGCCTCCCAGTTTCGACGGCTTCACAGCAAGCAGCTCCGCCACACATTCAGGTTTTACTCACAACAGTGGAGGACTTGGGCGGCTTGCTTTATTCAGGCAGCATGGCGTCGTTATAGTAAGAAGAAGCTTGAAGAGTCTCTGCGGGAAGAGGAGAATAGGTTGCAAGATGCACTTGCGAAGGCAGAGACAAGCTCCCCTAGTCTTGGTGCCACCATTTATGCCTCGCGATTCGCTGCTAATGTACTTCGCGCTGTACGGCTACGGCGCAGTGGTACACGCAAGGGAAGGGTGCCAGAGAGAATACCGCCCATGCTACTTCAGAAGCCAGCAGAGCCAGATTTTACTGCTGAAGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

191

Amino Acids

21.86

Weight (kDa)

9.95

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53130
fragaria_vesca	FvH4_2g31110 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200
malus_domestica	MD01G1217100.v1.1 MD01G1217300.v1.1 MD07G1286700.v1.1
prunus_persica	Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1
pyrus_communis	pycom01g22750 pycom07g26000
rosa_chinensis	RchiOBHm_Chr1g0380261 RchiOBHm_Chr1g0380301
rosa_laevigata	RLG00000026314
rosa_multiflora	Rmu_sc0001232.1_g000031 Rmu_sc0002387.1_g000001 Rmu_sc0002387.1_g000009 Rmu_sc0003249.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279530
rosa_rugosa	Rorug01G0419600 Rorug01G0419700
rosa_samantha	Rh1AG444200 Rh1AG444300 Rh1CG412900
rosa_wichuraiana	Rw1G038580 Rw1G038650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	422, 505
AccII	CGCG	2 cut(s)	442, 465
AciI	CCGC	4 cut(s)	253, 296, 358, 521
AclWI	GGATC	1 cut(s)	110
AcuI	CTGAAG	2 cut(s)	227, 518
AcyI	GRCGYC	1 cut(s)	322
AfaI	GTAC	3 cut(s)	459, 471, 490
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	55, 193, 347
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	13, 97, 250, 343, 408
AluI	AGCT	5 cut(s)	13, 97, 250, 343, 408
Alw26I	GTCTC	2 cut(s)	357, 395
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	247, 314, 449
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	467, 483
AsuHPI	GGTGA	2 cut(s)	89, 101
BanI	GGYRCC	2 cut(s)	422, 505
BanII	GRGCYC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	259, 326, 436
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	3 cut(s)	248, 488, 494
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	2 cut(s)	357, 395
BfaI	CTAG	2 cut(s)	150, 414
BisI	GCNGC	4 cut(s)	248, 297, 315, 450
BlsI	GCNGC	4 cut(s)	249, 298, 316, 451
BmiI	GGNNCC	2 cut(s)	424, 507
BmrI	ACTGGG	2 cut(s)	54, 217
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	2 cut(s)	54, 217
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	49, 223
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	49, 223
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	259, 326, 436
Bsh1236I	CGCG	2 cut(s)	442, 465
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	2 cut(s)	422, 505
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	357, 395
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	115, 202
Bsp68I	TCGCGA	1 cut(s)	442
BspACI	CCGC	4 cut(s)	253, 296, 358, 521
BspANI	GGCC	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	442, 465
BspLI	GGNNCC	2 cut(s)	424, 507
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	87
BspT107I	GGYRCC	2 cut(s)	422, 505
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	49, 223
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	2 cut(s)	115, 202
BssNI	GRCGYC	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	157, 282
Bst6I	CTCTTC	4 cut(s)	87, 133, 342, 357
BstACI	GRCGYC	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	11, 245, 301, 543
BstDEI	CTNAG	1 cut(s)	167
BstFNI	CGCG	2 cut(s)	442, 465
BstHHI	GCGC	2 cut(s)	467, 483
BstKTI	GATC	2 cut(s)	118, 205
BstMAI	GTCTC	2 cut(s)	357, 395
BstMBI	GATC	2 cut(s)	115, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 194, 547
BstUI	CGCG	2 cut(s)	442, 465
BstV1I	GCAGC	3 cut(s)	259, 326, 436
BsuRI	GGCC	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	287, 490
BtuMI	TCGCGA	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	11, 245, 301, 543
CfoI	GCGC	2 cut(s)	467, 483
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	458, 470, 489
CviAII	CATG	3 cut(s)	105, 318, 526
CviQI	GTAC	3 cut(s)	458, 470, 489
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	117, 204
DpnII	GATC	2 cut(s)	115, 202
Eam1104I	CTCTTC	4 cut(s)	87, 133, 342, 357
EarI	CTCTTC	4 cut(s)	87, 133, 342, 357
EciI	GGCGGA	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	227, 518
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	3 cut(s)	108, 321, 529
FaiI	YATR	6 cut(s)	23, 106, 319, 330, 435, 527
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	3 cut(s)	104, 317, 525
FauI	CCCGC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	248, 297, 315, 450
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	4 cut(s)	248, 297, 315, 450
FspBI	CTAG	2 cut(s)	150, 414
GlaI	GCGC	2 cut(s)	466, 482
GluI	GCNGC	4 cut(s)	248, 297, 315, 450
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	467, 483
Hin1I	GRCGYC	1 cut(s)	322
Hin1II	CATG	3 cut(s)	108, 321, 529
Hin6I	GCGC	2 cut(s)	465, 481
HinP1I	GCGC	2 cut(s)	465, 481
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	350, 444
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	89, 101
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	3 cut(s)	61, 207, 537
Hpy188III	TCNNGA	2 cut(s)	113, 441
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	2 cut(s)	234, 327
HpyAV	CCTTC	3 cut(s)	33, 388, 495
HpyCH4III	ACNGT	2 cut(s)	157, 282
HpyCH4V	TGCA	2 cut(s)	379, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 194, 547
HpyF3I	CTNAG	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	108, 321, 529
HspAI	GCGC	2 cut(s)	465, 481
Kzo9I	GATC	2 cut(s)	115, 202
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	255, 413
LpnPI	CCDG	8 cut(s)	30, 88, 236, 250, 296, 522, 555, 564
Lsp1109I	GCAGC	3 cut(s)	259, 326, 436
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	150, 414
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	117, 204
MboI	GATC	2 cut(s)	115, 202
MboII	GAAGA	7 cut(s)	43, 104, 120, 128, 349, 359, 374
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	129, 136, 229, 279, 358, 448
MroXI	GAANNNNTTC	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	280
MspI	CCGG	1 cut(s)	75
MvnI	CGCG	2 cut(s)	442, 465
MwoI	GCNNNNNNNGC	3 cut(s)	10, 194, 547
NdeII	GATC	2 cut(s)	115, 202
NlaIII	CATG	3 cut(s)	108, 321, 529
NlaIV	GGNNCC	2 cut(s)	424, 507
NmuCI	GTSAC	1 cut(s)	77
NruI	TCGCGA	1 cut(s)	442
OliI	CACNNNNGTG	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	4 cut(s)	249, 298, 316, 451
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	424, 507
RruI	TCGCGA	1 cut(s)	442
RsaI	GTAC	3 cut(s)	459, 471, 490
RsaNI	GTAC	3 cut(s)	458, 470, 489
RseI	CAYNNNNRTG	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	87
SatI	GCNGC	4 cut(s)	248, 297, 315, 450
Sau3AI	GATC	2 cut(s)	115, 202
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	8 cut(s)	15, 99, 128, 252, 269, 345, 377, 410
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	4 cut(s)	253, 296, 358, 521
SspMI	CTAG	2 cut(s)	150, 414
TaaI	ACNGT	2 cut(s)	157, 282
TaqI	TCGA	2 cut(s)	177, 229
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	444
TscAI	CASTG	2 cut(s)	287, 490
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	3 cut(s)	247, 314, 449
Tsp45I	GTSAC	1 cut(s)	77
TspRI	CASTG	2 cut(s)	287, 490
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	150, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.