Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005221

Physical Location & Seq

Genomic Coordinates Forward (+)

66483013 .. 66483783

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG444200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAATTTTCAGCAAGAGAAGATAGTCAGGTTTCAGGATTGGAATCCAGAGAAACCTATTGACCCACCATATTCTCCAAATGATGGAATGCAGCGAGGAACTTTCAGAACAACATTTAGCTCGGTTTCATCTAAATTTCAAAGACGCCTGGAATCTGGTTCCGAGAGGATTAAGAAGTCATGGAAGTCCTATTCGATTGATGGGGTTGTTGGTAAAAGCTTTTGTTCTAGAGTTCTTGATCCGCAAGGGCAATTCCTTCAAAAGTGGAATAAGATATTTGTATTGGCATGTGTAATTGCTGTCTCCCTGGATCCTTTGTTCTTTTACGTCCCTGTGATTGATGATGACAATAAGTGCCTTGACAAGGACAGAAAGATGGAGATAACAGCTAGTGTTTTGCGCTCATTCACCGACATATTTTATGTAGTTCATATAATTTTTCAATTTCGTACTGGATTTATTGCTCCTCCTTCTCGAGTTTTTGGAAGAGGTGTTTTAGTTGAAGATGCTTGGGCTATTGCAAAGCGGTATCTATCCTCATACTTCCTAATTGACATTCTTGCTGTCCTTCCTCTCCCACAGGTACTCTATTGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

199

Amino Acids

22.98

Weight (kDa)

9.17

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53130
fragaria_vesca	FvH4_2g31110 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200
malus_domestica	MD01G1217100.v1.1 MD01G1217300.v1.1 MD07G1286700.v1.1
prunus_persica	Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1
pyrus_communis	pycom01g22750 pycom07g26000
rosa_chinensis	RchiOBHm_Chr1g0380261 RchiOBHm_Chr1g0380301
rosa_laevigata	RLG00000026314
rosa_multiflora	Rmu_sc0001232.1_g000031 Rmu_sc0002387.1_g000001 Rmu_sc0002387.1_g000009 Rmu_sc0003249.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279530
rosa_rugosa	Rorug01G0419600 Rorug01G0419700
rosa_samantha	Rh1AG444200 Rh1AG444300 Rh1CG412900
rosa_wichuraiana	Rw1G038580 Rw1G038650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	2 cut(s)	242, 526
AclWI	GGATC	3 cut(s)	233, 305, 318
AcsI	RAATTY	2 cut(s)	4, 134
AcyI	GRCGYC	1 cut(s)	145
AfaI	GTAC	2 cut(s)	451, 585
AfiI	CCNNNNNNNGG	2 cut(s)	83, 364
AgsI	TTSAA	4 cut(s)	140, 260, 443, 503
AjnI	CCWGG	2 cut(s)	147, 306
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	3 cut(s)	120, 219, 389
AluI	AGCT	3 cut(s)	120, 219, 389
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	3 cut(s)	233, 305, 318
Ama87I	CYCGRG	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	4, 134
AspLEI	GCGC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	474
BamHI	GGATCC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	3 cut(s)	77, 194, 370
BciT130I	CCWGG	2 cut(s)	149, 308
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	228, 390
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	149, 308
BmeT110I	CYCGRG	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	160, 312
BmrFI	CCNGG	2 cut(s)	149, 308
BmsI	GCATC	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 364
Bse1I	ACTGG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	149, 308
BseDI	CCNNGG	1 cut(s)	306
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	83, 364
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	83, 364
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	238, 310
BspACI	CCGC	2 cut(s)	242, 526
BspLI	GGNNCC	2 cut(s)	160, 312
BspPI	GGATC	3 cut(s)	233, 305, 318
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	238, 310
BssNI	GRCGYC	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	149, 308
Bst6I	CTCTTC	1 cut(s)	481
BstACI	GRCGYC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	597
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	241, 313
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	2 cut(s)	238, 310
BstNI	CCWGG	2 cut(s)	149, 308
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	147, 306
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
CfoI	GCGC	1 cut(s)	402
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	450, 584
CviAII	CATG	2 cut(s)	180, 288
CviJI	RGCY	4 cut(s)	120, 219, 389, 515
CviKI_1	RGCY	4 cut(s)	120, 219, 389, 515
CviQI	GTAC	2 cut(s)	450, 584
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	2 cut(s)	240, 312
DpnII	GATC	2 cut(s)	238, 310
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	147, 306
FaeI	CATG	2 cut(s)	183, 291
FaiI	YATR	8 cut(s)	70, 181, 289, 416, 423, 432, 434, 541
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	179, 287
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	2 cut(s)	228, 390
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	1 cut(s)	92
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	183, 291
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	2 cut(s)	43, 152
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	107, 163
Hpy188III	TCNNGA	5 cut(s)	35, 47, 228, 236, 474
HpyAV	CCTTC	3 cut(s)	266, 480, 578
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	91, 521
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	183, 291
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	238, 310
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	228, 390
MaeII	ACGT	1 cut(s)	327
MalI	GATC	2 cut(s)	240, 312
MboI	GATC	2 cut(s)	238, 310
MboII	GAAGA	3 cut(s)	31, 498, 515
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	7 cut(s)	4, 134, 251, 294, 435, 443, 549
MnlI	CCTC	6 cut(s)	89, 159, 477, 482, 547, 582
MseI	TTAA	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	149, 308
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	2 cut(s)	149, 308
NdeII	GATC	2 cut(s)	238, 310
NlaIII	CATG	2 cut(s)	183, 291
NlaIV	GGNNCC	2 cut(s)	160, 312
NspI	RCATGY	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	474
PctI	GAATGC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	43, 152
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	147, 306
PspGI	CCWGG	2 cut(s)	147, 306
PspN4I	GGNNCC	2 cut(s)	160, 312
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	451, 585
RsaNI	GTAC	2 cut(s)	450, 584
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	238, 310
ScrFI	CCNGG	2 cut(s)	149, 308
SetI	ASST	8 cut(s)	32, 58, 122, 221, 330, 391, 493, 585
SfaNI	GCATC	1 cut(s)	496
Sfr274I	CTCGAG	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	7 cut(s)	4, 134, 251, 294, 435, 443, 549
SsiI	CCGC	2 cut(s)	242, 526
SspMI	CTAG	2 cut(s)	228, 390
StyD4I	CCNGG	2 cut(s)	147, 306
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	194, 475
TasI	AATT	7 cut(s)	4, 134, 251, 294, 435, 443, 549
TfiI	GAWTC	2 cut(s)	43, 152
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	17, 117, 419
Van91I	CCANNNNNTGG	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	4, 134
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	474
XspI	CTAG	2 cut(s)	228, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.