Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005221

Physical Location & Seq

Genomic Coordinates Forward (+)

31001685 .. 31003692

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1217100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAATTTTCAGCAAGAGAAGTTCGTCAGGTTTCAGGATTGGACTGCAGAGAAGAATGTTGAGCCACTATATTCTCCAGATGATGACCTGCCACCAGGGAAGTTCAGAAGAACGATTAACTCGGTGTCAGTCAAATTCCAAAGAAGCTTGGAATCTGGTTCTGAGCGGATCAAGACGTCATGGAAATCTTATTTAATTGACAGTGTTGTCGGCAACAGCTTTGGTAGTGGAATTCTTAATCCTCAAGGGCCATTCCTTCAGAAGTGGAATAAGATATTTGTATTGGCATGTATTATTGCCGTCTCCCTTGATCCCTTGTTCTCGTTTGGTATGCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

114

Amino Acids

12.92

Weight (kDa)

9.17

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53130
fragaria_vesca	FvH4_2g31110 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200 FvH4_7g31200
malus_domestica	MD01G1217100.v1.1 MD01G1217300.v1.1 MD07G1286700.v1.1
prunus_persica	Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1 Prupe.2G308700_v2.0.a1
pyrus_communis	pycom01g22750 pycom07g26000
rosa_chinensis	RchiOBHm_Chr1g0380261 RchiOBHm_Chr1g0380301
rosa_laevigata	RLG00000026314
rosa_multiflora	Rmu_sc0001232.1_g000031 Rmu_sc0002387.1_g000001 Rmu_sc0002387.1_g000009 Rmu_sc0003249.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279530
rosa_rugosa	Rorug01G0419600 Rorug01G0419700
rosa_samantha	Rh1AG444200 Rh1AG444300 Rh1CG412900
rosa_wichuraiana	Rw1G038580 Rw1G038650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	96
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	2 cut(s)	176, 305
AcsI	RAATTY	3 cut(s)	4, 134, 231
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	147, 219
AluI	AGCT	2 cut(s)	147, 219
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	2 cut(s)	176, 305
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	3 cut(s)	4, 134, 231
AspS9I	GGNCC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	168, 310
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	176, 305
BsrBI	CCGCTC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	168, 310
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	171, 313
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	2 cut(s)	168, 310
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	248
CviAII	CATG	2 cut(s)	180, 288
CviJI	RGCY	4 cut(s)	64, 147, 219, 250
CviKI_1	RGCY	4 cut(s)	64, 147, 219, 250
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	170, 312
DpnII	GATC	2 cut(s)	168, 310
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	2 cut(s)	183, 291
FaiI	YATR	4 cut(s)	70, 181, 289, 332
FatI	CATG	2 cut(s)	179, 287
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	183, 291
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	1 cut(s)	152
Hpy188I	TCNGA	3 cut(s)	107, 163, 261
Hpy188III	TCNNGA	3 cut(s)	35, 77, 172
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	47, 334
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	183, 291
Kzo9I	GATC	2 cut(s)	168, 310
LpnPI	CCDG	7 cut(s)	13, 20, 81, 90, 101, 108, 141
MaeII	ACGT	1 cut(s)	176
MalI	GATC	2 cut(s)	170, 312
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	2 cut(s)	168, 310
MboII	GAAGA	2 cut(s)	64, 120
MluCI	AATT	4 cut(s)	4, 134, 195, 231
MnlI	CCTC	1 cut(s)	252
MseI	TTAA	3 cut(s)	117, 194, 237
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	168, 310
NlaIII	CATG	2 cut(s)	183, 291
NspI	RCATGY	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	117, 194, 237
Sau3AI	GATC	2 cut(s)	168, 310
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	5 cut(s)	32, 90, 149, 179, 221
SfcI	CTRYAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	4, 134, 195, 231
SsiI	CCGC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	179
TasI	AATT	4 cut(s)	4, 134, 195, 231
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	117, 194, 237
Tru9I	TTAA	3 cut(s)	117, 194, 237
TscAI	CASTG	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	3 cut(s)	4, 134, 231
XceI	RCATGY	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.