Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g33020 FvH4_3g06060 |
| rosa_chinensis | RchiOBHm_Chr1g0379621 RchiOBHm_Chr5g0010071 RchiOBHm_Chr6g0278391 |
| rosa_laevigata | RLG00000013233 |
| rosa_multiflora | Rmu_sc0002080.1_g000036 Rmu_sc0022226.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00280000 |
| rosa_rugosa | Rorug01G0413600 Rorug04G0449100 |
| rosa_samantha | Rh1AG437000 Rh1AG437300 Rh1AG437400 Rh1BG393500 Rh1CG406500 Rh1DG424400 Rh5CG087500 Rh6AG229400 Rh6CG233200 Rh7CG094900 Rh7CG095000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1185 |
| Acc36I | ACCTGC | 2 cut(s) | 799, 1185 |
| AccB1I | GGYRCC | 1 cut(s) | 448 |
| AccBSI | CCGCTC | 1 cut(s) | 216 |
| AccI | GTMKAC | 1 cut(s) | 990 |
| AccII | CGCG | 1 cut(s) | 1197 |
| AciI | CCGC | 4 cut(s) | 7, 214, 436, 866 |
| AclI | AACGTT | 1 cut(s) | 496 |
| AcoI | YGGCCR | 2 cut(s) | 924, 1254 |
| AcsI | RAATTY | 2 cut(s) | 825, 1032 |
| AcuI | CTGAAG | 2 cut(s) | 96, 593 |
| AfaI | GTAC | 3 cut(s) | 399, 541, 1355 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 247, 250, 445 |
| AgsI | TTSAA | 8 cut(s) | 16, 116, 362, 395, 652, 1030, 1060, 1213 |
| AhlI | ACTAGT | 2 cut(s) | 428, 560 |
| AjiI | CACGTC | 1 cut(s) | 641 |
| AjnI | CCWGG | 1 cut(s) | 1141 |
| Alw21I | GWGCWC | 3 cut(s) | 145, 160, 1386 |
| Alw44I | GTGCAC | 1 cut(s) | 156 |
| AoxI | GGCC | 2 cut(s) | 924, 1254 |
| ApaLI | GTGCAC | 1 cut(s) | 156 |
| ApeKI | GCWGC | 3 cut(s) | 131, 334, 693 |
| ApoI | RAATTY | 2 cut(s) | 825, 1032 |
| AseI | ATTAAT | 2 cut(s) | 521, 890 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 390 |
| AspLEI | GCGC | 1 cut(s) | 1199 |
| AspS9I | GGNCC | 3 cut(s) | 265, 346, 613 |
| AsuHPI | GGTGA | 2 cut(s) | 203, 245 |
| AvaII | GGWCC | 3 cut(s) | 265, 346, 613 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BalI | TGGCCA | 1 cut(s) | 1256 |
| BanI | GGYRCC | 1 cut(s) | 448 |
| BanII | GRGCYC | 2 cut(s) | 145, 1386 |
| BbsI | GAAGAC | 1 cut(s) | 713 |
| Bbv12I | GWGCWC | 3 cut(s) | 145, 160, 1386 |
| BbvI | GCAGC | 3 cut(s) | 143, 321, 680 |
| BccI | CCATC | 3 cut(s) | 182, 472, 844 |
| BceAI | ACGGC | 1 cut(s) | 436 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 481, 515 |
| BciT130I | CCWGG | 1 cut(s) | 1143 |
| BciVI | GTATCC | 1 cut(s) | 1197 |
| BcuI | ACTAGT | 2 cut(s) | 428, 560 |
| BfaI | CTAG | 7 cut(s) | 198, 219, 429, 561, 711, 1319, 1417 |
| BfmI | CTRYAG | 1 cut(s) | 1178 |
| BfuAI | ACCTGC | 2 cut(s) | 799, 1185 |
| BfuI | GTATCC | 1 cut(s) | 1197 |
| BisI | GCNGC | 4 cut(s) | 132, 214, 335, 694 |
| BlsI | GCNGC | 4 cut(s) | 133, 215, 336, 695 |
| BmcAI | AGTACT | 1 cut(s) | 399 |
| Bme1390I | CCNGG | 1 cut(s) | 1143 |
| Bme18I | GGWCC | 3 cut(s) | 265, 346, 613 |
| BmgBI | CACGTC | 1 cut(s) | 641 |
| BmgT120I | GGNCC | 3 cut(s) | 265, 346, 613 |
| BmiI | GGNNCC | 2 cut(s) | 348, 450 |
| BmrFI | CCNGG | 1 cut(s) | 1143 |
| BmsI | GCATC | 2 cut(s) | 479, 865 |
| BpiI | GAAGAC | 1 cut(s) | 713 |
| BpuEI | CTTGAG | 1 cut(s) | 1322 |
| BsaAI | YACGTR | 2 cut(s) | 167, 530 |
| BsaJI | CCNNGG | 1 cut(s) | 246 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 247, 250, 445 |
| Bse1I | ACTGG | 3 cut(s) | 348, 1329, 1361 |
| BseBI | CCWGG | 1 cut(s) | 1143 |
| BseDI | CCNNGG | 1 cut(s) | 246 |
| BseGI | GGATG | 3 cut(s) | 464, 604, 1285 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 247, 250, 445 |
| BseNI | ACTGG | 3 cut(s) | 348, 1329, 1361 |
| BseRI | GAGGAG | 2 cut(s) | 266, 1298 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| BseXI | GCAGC | 3 cut(s) | 143, 321, 680 |
| BsgI | GTGCAG | 2 cut(s) | 693, 1358 |
| Bsh1236I | CGCG | 1 cut(s) | 1197 |
| Bsh1285I | CGRYCG | 1 cut(s) | 11 |
| BshFI | GGCC | 2 cut(s) | 926, 1256 |
| BshNI | GGYRCC | 1 cut(s) | 448 |
| BsiEI | CGRYCG | 1 cut(s) | 11 |
| BsiHKAI | GWGCWC | 3 cut(s) | 145, 160, 1386 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 247, 250, 445 |
| BsmI | GAATGC | 1 cut(s) | 1042 |
| BsnI | GGCC | 2 cut(s) | 926, 1256 |
| Bsp1286I | GDGCHC | 3 cut(s) | 145, 160, 1386 |
| Bsp143I | GATC | 2 cut(s) | 784, 1261 |
| BspACI | CCGC | 4 cut(s) | 7, 214, 436, 866 |
| BspANI | GGCC | 2 cut(s) | 926, 1256 |
| BspFNI | CGCG | 1 cut(s) | 1197 |
| BspHI | TCATGA | 3 cut(s) | 582, 960, 1225 |
| BspLI | GGNNCC | 2 cut(s) | 348, 450 |
| BspMAI | CTGCAG | 1 cut(s) | 1182 |
| BspMI | ACCTGC | 2 cut(s) | 799, 1185 |
| BspT107I | GGYRCC | 1 cut(s) | 448 |
| BsrBI | CCGCTC | 1 cut(s) | 216 |
| BsrI | ACTGG | 3 cut(s) | 348, 1329, 1361 |
| BssECI | CCNNGG | 1 cut(s) | 246 |
| BssMI | GATC | 2 cut(s) | 784, 1261 |
| BssT1I | CCWWGG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 1 cut(s) | 1143 |
| Bst4CI | ACNGT | 5 cut(s) | 282, 314, 812, 910, 1124 |
| Bst6I | CTCTTC | 2 cut(s) | 267, 1229 |
| BstBAI | YACGTR | 2 cut(s) | 167, 530 |
| BstC8I | GCNNGC | 2 cut(s) | 51, 475 |
| BstDEI | CTNAG | 3 cut(s) | 152, 1132, 1378 |
| BstF5I | GGATG | 3 cut(s) | 464, 604, 1285 |
| BstFNI | CGCG | 1 cut(s) | 1197 |
| BstHHI | GCGC | 1 cut(s) | 1199 |
| BstKTI | GATC | 2 cut(s) | 787, 1264 |
| BstMBI | GATC | 2 cut(s) | 784, 1261 |
| BstMCI | CGRYCG | 1 cut(s) | 11 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 140, 176, 702, 800, 1381 |
| BstNI | CCWGG | 1 cut(s) | 1143 |
| BstNSI | RCATGY | 3 cut(s) | 477, 738, 1300 |
| BstSCI | CCNGG | 1 cut(s) | 1141 |
| BstSFI | CTRYAG | 1 cut(s) | 1178 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstSNI | TACGTA | 1 cut(s) | 530 |
| BstUI | CGCG | 1 cut(s) | 1197 |
| BstV1I | GCAGC | 3 cut(s) | 143, 321, 680 |
| BstV2I | GAAGAC | 1 cut(s) | 713 |
| BsuI | GTATCC | 1 cut(s) | 1197 |
| BsuRI | GGCC | 2 cut(s) | 926, 1256 |
| BtgZI | GCGATG | 1 cut(s) | 888 |
| BtrI | CACGTC | 1 cut(s) | 641 |
| BtsCI | GGATG | 3 cut(s) | 464, 604, 1285 |
| BtsI | GCAGTG | 1 cut(s) | 681 |
| BtsIMutI | CAGTG | 2 cut(s) | 681, 817 |
| BveI | ACCTGC | 2 cut(s) | 799, 1185 |
| Cac8I | GCNNGC | 2 cut(s) | 51, 475 |
| CciI | TCATGA | 3 cut(s) | 582, 960, 1225 |
| CfoI | GCGC | 1 cut(s) | 1199 |
| Cfr13I | GGNCC | 3 cut(s) | 265, 346, 613 |
| Csp6I | GTAC | 3 cut(s) | 398, 540, 1354 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 547, 582 |
| CviQI | GTAC | 3 cut(s) | 398, 540, 1354 |
| DdeI | CTNAG | 3 cut(s) | 152, 1132, 1378 |
| DpnI | GATC | 2 cut(s) | 786, 1263 |
| DpnII | GATC | 2 cut(s) | 784, 1261 |
| DraI | TTTAAA | 1 cut(s) | 25 |
| EaeI | YGGCCR | 2 cut(s) | 924, 1254 |
| Eam1104I | CTCTTC | 2 cut(s) | 267, 1229 |
| EarI | CTCTTC | 2 cut(s) | 267, 1229 |
| EciI | GGCGGA | 1 cut(s) | 881 |
| Ecl136II | GAGCTC | 2 cut(s) | 143, 1384 |
| Eco105I | TACGTA | 1 cut(s) | 530 |
| Eco130I | CCWWGG | 1 cut(s) | 246 |
| Eco24I | GRGCYC | 2 cut(s) | 145, 1386 |
| Eco32I | GATATC | 1 cut(s) | 688 |
| Eco47I | GGWCC | 3 cut(s) | 265, 346, 613 |
| Eco53kI | GAGCTC | 2 cut(s) | 143, 1384 |
| Eco57I | CTGAAG | 2 cut(s) | 96, 593 |
| EcoICRI | GAGCTC | 2 cut(s) | 143, 1384 |
| EcoRII | CCWGG | 1 cut(s) | 1141 |
| EcoRV | GATATC | 1 cut(s) | 688 |
| EcoT14I | CCWWGG | 1 cut(s) | 246 |
| EcoT22I | ATGCAT | 2 cut(s) | 479, 880 |
| EcoT38I | GRGCYC | 2 cut(s) | 145, 1386 |
| ErhI | CCWWGG | 1 cut(s) | 246 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 310, 342 |
| FauNDI | CATATG | 1 cut(s) | 1066 |
| FblI | GTMKAC | 1 cut(s) | 990 |
| Fnu4HI | GCNGC | 4 cut(s) | 132, 214, 335, 694 |
| FokI | GGATG | 3 cut(s) | 451, 611, 1292 |
| FriOI | GRGCYC | 2 cut(s) | 145, 1386 |
| Fsp4HI | GCNGC | 4 cut(s) | 132, 214, 335, 694 |
| FspBI | CTAG | 7 cut(s) | 198, 219, 429, 561, 711, 1319, 1417 |
| GlaI | GCGC | 1 cut(s) | 1198 |
| GluI | GCNGC | 4 cut(s) | 132, 214, 335, 694 |
| HaeIII | GGCC | 2 cut(s) | 926, 1256 |
| HhaI | GCGC | 1 cut(s) | 1199 |
| Hin6I | GCGC | 1 cut(s) | 1197 |
| HinP1I | GCGC | 1 cut(s) | 1197 |
| HindIII | AAGCTT | 1 cut(s) | 1329 |
| HinfI | GANTC | 6 cut(s) | 35, 391, 422, 460, 718, 916 |
| HphI | GGTGA | 2 cut(s) | 203, 245 |
| Hpy166II | GTNNAC | 5 cut(s) | 92, 101, 158, 991, 1009 |
| Hpy188I | TCNGA | 3 cut(s) | 76, 573, 613 |
| Hpy8I | GTNNAC | 5 cut(s) | 92, 101, 158, 991, 1009 |
| Hpy99I | CGWCG | 3 cut(s) | 99, 141, 899 |
| HpyAV | CCTTC | 3 cut(s) | 626, 770, 1300 |
| HpyCH4III | ACNGT | 5 cut(s) | 282, 314, 812, 910, 1124 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 140, 176, 702, 800, 1381 |
| HpyF3I | CTNAG | 3 cut(s) | 152, 1132, 1378 |
| HspAI | GCGC | 1 cut(s) | 1197 |
| Kzo9I | GATC | 2 cut(s) | 784, 1261 |
| LmnI | GCTCC | 3 cut(s) | 1285, 1389, 1414 |
| Lsp1109I | GCAGC | 3 cut(s) | 143, 321, 680 |
| LweI | GCATC | 2 cut(s) | 479, 865 |
| MaeI | CTAG | 7 cut(s) | 198, 219, 429, 561, 711, 1319, 1417 |
| MaeIII | GTNAC | 8 cut(s) | 119, 207, 276, 431, 641, 727, 758, 853 |
| MalI | GATC | 2 cut(s) | 786, 1263 |
| MbiI | CCGCTC | 1 cut(s) | 216 |
| MboI | GATC | 2 cut(s) | 784, 1261 |
| MhlI | GDGCHC | 3 cut(s) | 145, 160, 1386 |
| MlsI | TGGCCA | 1 cut(s) | 1256 |
| MluCI | AATT | 6 cut(s) | 161, 201, 295, 825, 1032, 1273 |
| MluNI | TGGCCA | 1 cut(s) | 1256 |
| MlyI | GAGTC | 3 cut(s) | 469, 727, 925 |
| MnlI | CCTC | 5 cut(s) | 244, 251, 563, 856, 1276 |
| Mox20I | TGGCCA | 1 cut(s) | 1256 |
| Mph1103I | ATGCAT | 2 cut(s) | 479, 880 |
| MroXI | GAANNNNTTC | 1 cut(s) | 390 |
| MscI | TGGCCA | 1 cut(s) | 1256 |
| MseI | TTAA | 7 cut(s) | 24, 225, 521, 771, 890, 1050, 1206 |
| Msp20I | TGGCCA | 1 cut(s) | 1256 |
| MspR9I | CCNGG | 1 cut(s) | 1143 |
| Mva1269I | GAATGC | 1 cut(s) | 1042 |
| MvaI | CCWGG | 1 cut(s) | 1143 |
| MvnI | CGCG | 1 cut(s) | 1197 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 140, 176, 702, 800, 1381 |
| NdeI | CATATG | 1 cut(s) | 1066 |
| NdeII | GATC | 2 cut(s) | 784, 1261 |
| NlaIV | GGNNCC | 2 cut(s) | 348, 450 |
| NmuCI | GTSAC | 2 cut(s) | 119, 641 |
| NsiI | ATGCAT | 2 cut(s) | 479, 880 |
| NspI | RCATGY | 3 cut(s) | 477, 738, 1300 |
| PaeI | GCATGC | 1 cut(s) | 477 |
| PagI | TCATGA | 3 cut(s) | 582, 960, 1225 |
| PaqCI | CACCTGC | 1 cut(s) | 1185 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 94, 100, 124, 133, 713 |
| PctI | GAATGC | 1 cut(s) | 1042 |
| PdmI | GAANNNNTTC | 1 cut(s) | 390 |
| PfeI | GAWTC | 3 cut(s) | 35, 391, 422 |
| PflFI | GACNNNGTC | 1 cut(s) | 712 |
| PkrI | GCNGC | 4 cut(s) | 133, 215, 336, 695 |
| PleI | GAGTC | 3 cut(s) | 468, 726, 924 |
| PpsI | GAGTC | 3 cut(s) | 468, 726, 924 |
| Ppu21I | YACGTR | 2 cut(s) | 167, 530 |
| PshBI | ATTAAT | 2 cut(s) | 521, 890 |
| Psp124BI | GAGCTC | 2 cut(s) | 145, 1386 |
| Psp1406I | AACGTT | 1 cut(s) | 496 |
| Psp6I | CCWGG | 1 cut(s) | 1141 |
| PspGI | CCWGG | 1 cut(s) | 1141 |
| PspN4I | GGNNCC | 2 cut(s) | 348, 450 |
| PspPI | GGNCC | 3 cut(s) | 265, 346, 613 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 108, 140 |
| PstI | CTGCAG | 1 cut(s) | 1182 |
| PsyI | GACNNNGTC | 1 cut(s) | 712 |
| RsaI | GTAC | 3 cut(s) | 399, 541, 1355 |
| RsaNI | GTAC | 3 cut(s) | 398, 540, 1354 |
| SacI | GAGCTC | 2 cut(s) | 145, 1386 |
| SaqAI | TTAA | 7 cut(s) | 24, 225, 521, 771, 890, 1050, 1206 |
| SatI | GCNGC | 4 cut(s) | 132, 214, 335, 694 |
| Sau3AI | GATC | 2 cut(s) | 784, 1261 |
| Sau96I | GGNCC | 3 cut(s) | 265, 346, 613 |
| ScaI | AGTACT | 1 cut(s) | 399 |
| SchI | GAGTC | 3 cut(s) | 469, 727, 925 |
| ScrFI | CCNGG | 1 cut(s) | 1143 |
| SduI | GDGCHC | 3 cut(s) | 145, 160, 1386 |
| SfaNI | GCATC | 2 cut(s) | 479, 865 |
| SfcI | CTRYAG | 1 cut(s) | 1178 |
| SinI | GGWCC | 3 cut(s) | 265, 346, 613 |
| SmlI | CTYRAG | 1 cut(s) | 1301 |
| SmoI | CTYRAG | 1 cut(s) | 1301 |
| SnaBI | TACGTA | 1 cut(s) | 530 |
| SpeI | ACTAGT | 2 cut(s) | 428, 560 |
| SphI | GCATGC | 1 cut(s) | 477 |
| Sse9I | AATT | 6 cut(s) | 161, 201, 295, 825, 1032, 1273 |
| SsiI | CCGC | 4 cut(s) | 7, 214, 436, 866 |
| SspI | AATATT | 1 cut(s) | 355 |
| SspMI | CTAG | 7 cut(s) | 198, 219, 429, 561, 711, 1319, 1417 |
| SstI | GAGCTC | 2 cut(s) | 145, 1386 |
| StyD4I | CCNGG | 1 cut(s) | 1141 |
| StyI | CCWWGG | 1 cut(s) | 246 |
| TaaI | ACNGT | 5 cut(s) | 282, 314, 812, 910, 1124 |
| TaqI | TCGA | 7 cut(s) | 291, 330, 425, 707, 716, 897, 919 |
| TaqII | GACCGA | 1 cut(s) | 282 |
| TasI | AATT | 6 cut(s) | 161, 201, 295, 825, 1032, 1273 |
| TatI | WGTACW | 1 cut(s) | 397 |
| TauI | GCSGC | 1 cut(s) | 216 |
| TfiI | GAWTC | 3 cut(s) | 35, 391, 422 |
| Tru1I | TTAA | 7 cut(s) | 24, 225, 521, 771, 890, 1050, 1206 |
| Tru9I | TTAA | 7 cut(s) | 24, 225, 521, 771, 890, 1050, 1206 |
| TscAI | CASTG | 2 cut(s) | 681, 817 |
| TseFI | GTSAC | 2 cut(s) | 119, 641 |
| TseI | GCWGC | 3 cut(s) | 131, 334, 693 |
| Tsp45I | GTSAC | 2 cut(s) | 119, 641 |
| TspDTI | ATGAA | 4 cut(s) | 599, 874, 929, 1088 |
| TspRI | CASTG | 2 cut(s) | 681, 817 |
| Tth111I | GACNNNGTC | 1 cut(s) | 712 |
| VneI | GTGCAC | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 3 cut(s) | 265, 346, 613 |
| VspI | ATTAAT | 2 cut(s) | 521, 890 |
| XapI | RAATTY | 2 cut(s) | 825, 1032 |
| XbaI | TCTAGA | 1 cut(s) | 218 |
| XceI | RCATGY | 3 cut(s) | 477, 738, 1300 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 475, 1264 |
| XmiI | GTMKAC | 1 cut(s) | 990 |
| XmnI | GAANNNNTTC | 1 cut(s) | 390 |
| XspI | CTAG | 7 cut(s) | 198, 219, 429, 561, 711, 1319, 1417 |
| ZrmI | AGTACT | 1 cut(s) | 399 |
| Zsp2I | ATGCAT | 2 cut(s) | 479, 880 |