Rh6CG233200

DNA topoisomerase type II (ATP-hydrolyzing) activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009658
Physical Location & Seq
Reverse (-)
39643029 .. 39643409
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG233200.1

Sequence Viewer

Length: 381 bp
ATGGCAGAGAGAACGTTCAAGAGACCTGTGTATGGTCCTTTTAATTCAAATCCATATGGGGCTAGAATTTTATGTATTTATCATTATGGCTCAGAAAACATGTCATATGATCGTAATAGTTTGGCCACCCCAGGCATAATTTTGTTGGGTGTAAGGACAGAAGACTTAGAAACTTACGAAATATCTCAAAATGTCAAGTATAGGGTAAAGATGACTCAAAAAGATAACAACGAGTGCCGGTGTTTGTTAAAAGTGAAATATTTGGTGAACAATGTAGAATGGCAGAACGAGCTGGAAGCTGGCATGAAAACTGAAATCGAGGCGTCGTACATCCATGGTTACAAGTTTTTGGCTGAGGTCTATTTACTATATAAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000271 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003844 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0006073 GO:0006091 GO:0006112 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0007568 GO:0008094 GO:0008150 GO:0008152 GO:0008340 GO:0008544 GO:0009058 GO:0009059 GO:0009250 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0010259 GO:0015980 GO:0016043 GO:0016051 GO:0016462 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030246 GO:0030855 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0033692 GO:0034637 GO:0034641 GO:0034645 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0055114 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1903046
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 ko01110 ko04113 map00500 map01100 map01110 map04113
Pfam Domains
Protein Families
Alpha-amylase Alpha-amylase_C CBM_48 TP6A_N

Protein Analysis

126

Amino Acids

14.78

Weight (kDa)

7.66

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOP6A-Spo11_Toprim PF21180 5 - 126 2.2e-24 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 2 cut(s) 19, 48
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 292, 299
AluI AGCT 2 cut(s) 292, 299
Alw26I GTCTC 1 cut(s) 16
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 354
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 130, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 237
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 130, 334
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 105, 345
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 334
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 104, 346
BspTNI GGTCTC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 130, 334
BssMI GATC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 91, 166, 354
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 35
CseI GACGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 100, 304, 335
CviJI RGCY 6 cut(s) 62, 90, 125, 292, 299, 353
CviKI_1 RGCY 6 cut(s) 62, 90, 125, 292, 299, 353
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 91, 166, 354
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 3 cut(s) 103, 307, 338
FatI CATG 3 cut(s) 99, 303, 334
FauNDI CATATG 2 cut(s) 55, 106
FokI GGATG 1 cut(s) 317
FspBI CTAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 3 cut(s) 103, 307, 338
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 238
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 3 cut(s) 91, 166, 354
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 3 cut(s) 103, 307, 338
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 39, 117, 144, 251, 278, 285
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 338
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 4 cut(s) 43, 66, 138, 374
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 2 cut(s) 313, 349
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 2 cut(s) 42, 248
Msp20I TGGCCA 1 cut(s) 125
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 289
NcoI CCATGG 1 cut(s) 334
NdeI CATATG 2 cut(s) 55, 106
NdeII GATC 1 cut(s) 109
NlaIII CATG 3 cut(s) 103, 307, 338
NspI RCATGY 1 cut(s) 103
PciI ACATGT 1 cut(s) 99
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 99
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspPI GGNCC 1 cut(s) 35
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 42, 248
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 132
SetI ASST 5 cut(s) 17, 28, 294, 301, 360
SinI GGWCC 1 cut(s) 35
Sse9I AATT 4 cut(s) 43, 66, 138, 374
SspI AATATT 1 cut(s) 260
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 334
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 318
TasI AATT 4 cut(s) 43, 66, 138, 374
Tru1I TTAA 2 cut(s) 42, 248
Tru9I TTAA 2 cut(s) 42, 248
TspDTI ATGAA 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 103
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.