Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g33020 FvH4_3g06060 |
| rosa_chinensis | RchiOBHm_Chr1g0379621 RchiOBHm_Chr5g0010071 RchiOBHm_Chr6g0278391 |
| rosa_laevigata | RLG00000013233 |
| rosa_multiflora | Rmu_sc0002080.1_g000036 Rmu_sc0022226.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00280000 |
| rosa_rugosa | Rorug01G0413600 Rorug04G0449100 |
| rosa_samantha | Rh1AG437000 Rh1AG437300 Rh1AG437400 Rh1BG393500 Rh1CG406500 Rh1DG424400 Rh5CG087500 Rh6AG229400 Rh6CG233200 Rh7CG094900 Rh7CG095000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 79, 331 |
| AgsI | TTSAA | 3 cut(s) | 25, 278, 406 |
| AluBI | AGCT | 2 cut(s) | 281, 364 |
| AluI | AGCT | 2 cut(s) | 281, 364 |
| ApoI | RAATTY | 2 cut(s) | 79, 331 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 47, 79 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 342, 395 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BfaI | CTAG | 2 cut(s) | 326, 347 |
| BseRI | GAGGAG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 1 cut(s) | 44 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 361, 370 |
| BstNSI | RCATGY | 1 cut(s) | 241 |
| CviAII | CATG | 6 cut(s) | 61, 74, 230, 238, 247, 432 |
| CviJI | RGCY | 2 cut(s) | 281, 364 |
| CviKI_1 | RGCY | 2 cut(s) | 281, 364 |
| FaeI | CATG | 6 cut(s) | 64, 77, 233, 241, 250, 435 |
| FatI | CATG | 6 cut(s) | 60, 73, 229, 237, 246, 431 |
| FauNDI | CATATG | 1 cut(s) | 216 |
| FspBI | CTAG | 2 cut(s) | 326, 347 |
| Hin1II | CATG | 6 cut(s) | 64, 77, 233, 241, 250, 435 |
| HindIII | AAGCTT | 1 cut(s) | 279 |
| HinfI | GANTC | 2 cut(s) | 343, 385 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 124, 337, 390 |
| HpyAV | CCTTC | 1 cut(s) | 214 |
| HpyCH4III | ACNGT | 1 cut(s) | 44 |
| HpyCH4V | TGCA | 3 cut(s) | 241, 380, 431 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 361, 370 |
| Hsp92II | CATG | 6 cut(s) | 64, 77, 233, 241, 250, 435 |
| LmnI | GCTCC | 1 cut(s) | 361 |
| LpnPI | CCDG | 3 cut(s) | 105, 350, 366 |
| MaeI | CTAG | 2 cut(s) | 326, 347 |
| MaeIII | GTNAC | 1 cut(s) | 233 |
| MboII | GAAGA | 2 cut(s) | 37, 277 |
| MluCI | AATT | 3 cut(s) | 79, 197, 331 |
| MlyI | GAGTC | 1 cut(s) | 394 |
| MnlI | CCTC | 2 cut(s) | 154, 304 |
| MroXI | GAANNNNTTC | 2 cut(s) | 342, 395 |
| MseI | TTAA | 5 cut(s) | 83, 99, 132, 300, 439 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 361, 370 |
| NdeI | CATATG | 1 cut(s) | 216 |
| NlaIII | CATG | 6 cut(s) | 64, 77, 233, 241, 250, 435 |
| NmuCI | GTSAC | 1 cut(s) | 233 |
| NspI | RCATGY | 1 cut(s) | 241 |
| PdmI | GAANNNNTTC | 2 cut(s) | 342, 395 |
| PfeI | GAWTC | 1 cut(s) | 343 |
| PleI | GAGTC | 1 cut(s) | 393 |
| PpsI | GAGTC | 1 cut(s) | 393 |
| SaqAI | TTAA | 5 cut(s) | 83, 99, 132, 300, 439 |
| SchI | GAGTC | 1 cut(s) | 394 |
| SetI | ASST | 5 cut(s) | 94, 148, 283, 366, 420 |
| Sse9I | AATT | 3 cut(s) | 79, 197, 331 |
| SspI | AATATT | 2 cut(s) | 187, 305 |
| SspMI | CTAG | 2 cut(s) | 326, 347 |
| TaaI | ACNGT | 1 cut(s) | 44 |
| TaqI | TCGA | 2 cut(s) | 309, 351 |
| TasI | AATT | 3 cut(s) | 79, 197, 331 |
| TfiI | GAWTC | 1 cut(s) | 343 |
| Tru1I | TTAA | 5 cut(s) | 83, 99, 132, 300, 439 |
| Tru9I | TTAA | 5 cut(s) | 83, 99, 132, 300, 439 |
| TseFI | GTSAC | 1 cut(s) | 233 |
| Tsp45I | GTSAC | 1 cut(s) | 233 |
| TspDTI | ATGAA | 3 cut(s) | 210, 233, 263 |
| XapI | RAATTY | 2 cut(s) | 79, 331 |
| XceI | RCATGY | 1 cut(s) | 241 |
| XmnI | GAANNNNTTC | 2 cut(s) | 342, 395 |
| XspI | CTAG | 2 cut(s) | 326, 347 |