Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g33020 FvH4_3g06060 |
| rosa_chinensis | RchiOBHm_Chr1g0379621 RchiOBHm_Chr5g0010071 RchiOBHm_Chr6g0278391 |
| rosa_laevigata | RLG00000013233 |
| rosa_multiflora | Rmu_sc0002080.1_g000036 Rmu_sc0022226.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00280000 |
| rosa_rugosa | Rorug01G0413600 Rorug04G0449100 |
| rosa_samantha | Rh1AG437000 Rh1AG437300 Rh1AG437400 Rh1BG393500 Rh1CG406500 Rh1DG424400 Rh5CG087500 Rh6AG229400 Rh6CG233200 Rh7CG094900 Rh7CG095000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 390 |
| AciI | CCGC | 3 cut(s) | 193, 213, 694 |
| AclWI | GGATC | 2 cut(s) | 226, 455 |
| AcoI | YGGCCR | 1 cut(s) | 808 |
| AcsI | RAATTY | 2 cut(s) | 21, 755 |
| AcyI | GRCGYC | 1 cut(s) | 387 |
| AfaI | GTAC | 2 cut(s) | 28, 205 |
| AflII | CTTAAG | 1 cut(s) | 605 |
| AflIII | ACRYGT | 1 cut(s) | 510 |
| AgsI | TTSAA | 6 cut(s) | 58, 317, 475, 613, 655, 755 |
| AluBI | AGCT | 2 cut(s) | 433, 734 |
| AluI | AGCT | 2 cut(s) | 433, 734 |
| Alw26I | GTCTC | 2 cut(s) | 60, 299 |
| AlwI | GGATC | 2 cut(s) | 226, 455 |
| AoxI | GGCC | 1 cut(s) | 808 |
| ApeKI | GCWGC | 5 cut(s) | 80, 111, 354, 565, 691 |
| ApoI | RAATTY | 2 cut(s) | 21, 755 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 497, 529 |
| AsuC2I | CCSGG | 1 cut(s) | 807 |
| AsuHPI | GGTGA | 1 cut(s) | 526 |
| BauI | CACGAG | 1 cut(s) | 449 |
| BbsI | GAAGAC | 1 cut(s) | 481 |
| BbvI | GCAGC | 5 cut(s) | 92, 98, 341, 552, 678 |
| BcnI | CCSGG | 1 cut(s) | 807 |
| BcoDI | GTCTC | 2 cut(s) | 60, 299 |
| BfaI | CTAG | 2 cut(s) | 117, 123 |
| BfrI | CTTAAG | 1 cut(s) | 605 |
| BglII | AGATCT | 2 cut(s) | 119, 601 |
| BisI | GCNGC | 6 cut(s) | 81, 112, 214, 355, 566, 692 |
| BlsI | GCNGC | 6 cut(s) | 82, 113, 215, 356, 567, 693 |
| Bme1390I | CCNGG | 1 cut(s) | 807 |
| BmrFI | CCNGG | 1 cut(s) | 807 |
| BmsI | GCATC | 2 cut(s) | 265, 366 |
| BpiI | GAAGAC | 1 cut(s) | 481 |
| BpuMI | CCSGG | 1 cut(s) | 807 |
| BsaAI | YACGTR | 1 cut(s) | 596 |
| BsaHI | GRCGYC | 1 cut(s) | 387 |
| BsaJI | CCNNGG | 1 cut(s) | 15 |
| Bse118I | RCCGGY | 1 cut(s) | 209 |
| BseDI | CCNNGG | 1 cut(s) | 15 |
| BseGI | GGATG | 1 cut(s) | 280 |
| BseXI | GCAGC | 5 cut(s) | 92, 98, 341, 552, 678 |
| BsgI | GTGCAG | 3 cut(s) | 97, 99, 551 |
| BshFI | GGCC | 1 cut(s) | 810 |
| BsiSI | CCGG | 2 cut(s) | 210, 807 |
| BsiWI | CGTACG | 1 cut(s) | 26 |
| BsmAI | GTCTC | 2 cut(s) | 60, 299 |
| BsnI | GGCC | 1 cut(s) | 810 |
| Bsp143I | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| BspACI | CCGC | 3 cut(s) | 193, 213, 694 |
| BspANI | GGCC | 1 cut(s) | 810 |
| BspPI | GGATC | 2 cut(s) | 226, 455 |
| BspTI | CTTAAG | 1 cut(s) | 605 |
| BsrFI | RCCGGY | 1 cut(s) | 209 |
| BssAI | RCCGGY | 1 cut(s) | 209 |
| BssECI | CCNNGG | 1 cut(s) | 15 |
| BssMI | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| BssNI | GRCGYC | 1 cut(s) | 387 |
| BssSI | CACGAG | 1 cut(s) | 449 |
| Bst2BI | CACGAG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 3 cut(s) | 31, 203, 310 |
| Bst6I | CTCTTC | 1 cut(s) | 59 |
| BstACI | GRCGYC | 1 cut(s) | 387 |
| BstAFI | CTTAAG | 1 cut(s) | 605 |
| BstBAI | YACGTR | 1 cut(s) | 596 |
| BstC8I | GCNNGC | 3 cut(s) | 380, 394, 812 |
| BstDSI | CCRYGG | 1 cut(s) | 15 |
| BstF5I | GGATG | 1 cut(s) | 280 |
| BstKTI | GATC | 5 cut(s) | 94, 122, 234, 463, 604 |
| BstMAI | GTCTC | 2 cut(s) | 60, 299 |
| BstMBI | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| BstNSI | RCATGY | 2 cut(s) | 382, 514 |
| BstSCI | CCNGG | 1 cut(s) | 805 |
| BstV1I | GCAGC | 5 cut(s) | 92, 98, 341, 552, 678 |
| BstV2I | GAAGAC | 1 cut(s) | 481 |
| BstX2I | RGATCY | 2 cut(s) | 119, 601 |
| BstYI | RGATCY | 2 cut(s) | 119, 601 |
| BsuRI | GGCC | 1 cut(s) | 810 |
| BtgI | CCRYGG | 1 cut(s) | 15 |
| BtsCI | GGATG | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 2 cut(s) | 82, 184 |
| Cac8I | GCNNGC | 3 cut(s) | 380, 394, 812 |
| Cfr10I | RCCGGY | 1 cut(s) | 209 |
| Csp6I | GTAC | 2 cut(s) | 27, 204 |
| CviAII | CATG | 5 cut(s) | 131, 379, 511, 746, 796 |
| CviJI | RGCY | 8 cut(s) | 83, 111, 126, 433, 691, 734, 810, 814 |
| CviKI_1 | RGCY | 8 cut(s) | 83, 111, 126, 433, 691, 734, 810, 814 |
| CviQI | GTAC | 2 cut(s) | 27, 204 |
| DpnI | GATC | 5 cut(s) | 93, 121, 233, 462, 603 |
| DpnII | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| EaeI | YGGCCR | 1 cut(s) | 808 |
| Eam1104I | CTCTTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 1 cut(s) | 59 |
| Eco32I | GATATC | 1 cut(s) | 587 |
| EcoRV | GATATC | 1 cut(s) | 587 |
| FaeI | CATG | 5 cut(s) | 134, 382, 514, 749, 799 |
| FatI | CATG | 5 cut(s) | 130, 378, 510, 745, 795 |
| FauNDI | CATATG | 1 cut(s) | 466 |
| Fnu4HI | GCNGC | 6 cut(s) | 81, 112, 214, 355, 566, 692 |
| FokI | GGATG | 1 cut(s) | 287 |
| Fsp4HI | GCNGC | 6 cut(s) | 81, 112, 214, 355, 566, 692 |
| FspBI | CTAG | 2 cut(s) | 117, 123 |
| GluI | GCNGC | 6 cut(s) | 81, 112, 214, 355, 566, 692 |
| HaeIII | GGCC | 1 cut(s) | 810 |
| HapII | CCGG | 2 cut(s) | 210, 807 |
| Hin1I | GRCGYC | 1 cut(s) | 387 |
| Hin1II | CATG | 5 cut(s) | 134, 382, 514, 749, 799 |
| HindIII | AAGCTT | 1 cut(s) | 732 |
| HinfI | GANTC | 4 cut(s) | 399, 478, 529, 787 |
| HpaII | CCGG | 2 cut(s) | 210, 807 |
| HphI | GGTGA | 1 cut(s) | 526 |
| Hpy166II | GTNNAC | 1 cut(s) | 454 |
| Hpy188I | TCNGA | 1 cut(s) | 792 |
| Hpy188III | TCNNGA | 3 cut(s) | 47, 65, 295 |
| Hpy8I | GTNNAC | 1 cut(s) | 454 |
| Hpy99I | CGWCG | 1 cut(s) | 392 |
| HpyAV | CCTTC | 2 cut(s) | 137, 760 |
| HpyCH4III | ACNGT | 3 cut(s) | 31, 203, 310 |
| HpyCH4IV | ACGT | 2 cut(s) | 387, 595 |
| HpyCH4V | TGCA | 9 cut(s) | 80, 114, 140, 278, 342, 357, 446, 568, 641 |
| HpySE526I | ACGT | 2 cut(s) | 387, 595 |
| Hsp92I | GRCGYC | 1 cut(s) | 387 |
| Hsp92II | CATG | 5 cut(s) | 134, 382, 514, 749, 799 |
| Kzo9I | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| LpnPI | CCDG | 6 cut(s) | 60, 223, 396, 450, 555, 820 |
| Lsp1109I | GCAGC | 5 cut(s) | 92, 98, 341, 552, 678 |
| LweI | GCATC | 2 cut(s) | 265, 366 |
| MaeI | CTAG | 2 cut(s) | 117, 123 |
| MaeII | ACGT | 2 cut(s) | 387, 595 |
| MalI | GATC | 5 cut(s) | 93, 121, 233, 462, 603 |
| MboI | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| MboII | GAAGA | 9 cut(s) | 46, 310, 481, 487, 517, 611, 625, 667, 689 |
| MflI | RGATCY | 2 cut(s) | 119, 601 |
| MluCI | AATT | 2 cut(s) | 21, 755 |
| MmeI | TCCRAC | 1 cut(s) | 684 |
| MnlI | CCTC | 3 cut(s) | 322, 667, 679 |
| MseI | TTAA | 5 cut(s) | 219, 255, 362, 549, 606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| MspA1I | CMGCKG | 1 cut(s) | 193 |
| MspCI | CTTAAG | 1 cut(s) | 605 |
| MspI | CCGG | 2 cut(s) | 210, 807 |
| MspR9I | CCNGG | 1 cut(s) | 807 |
| NciI | CCSGG | 1 cut(s) | 807 |
| NdeI | CATATG | 1 cut(s) | 466 |
| NdeII | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| NlaIII | CATG | 5 cut(s) | 134, 382, 514, 749, 799 |
| NspI | RCATGY | 2 cut(s) | 382, 514 |
| PaeI | GCATGC | 1 cut(s) | 382 |
| PciI | ACATGT | 1 cut(s) | 510 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 456 |
| PfeI | GAWTC | 4 cut(s) | 399, 478, 529, 787 |
| Pfl23II | CGTACG | 1 cut(s) | 26 |
| PflFI | GACNNNGTC | 1 cut(s) | 71 |
| PkrI | GCNGC | 6 cut(s) | 82, 113, 215, 356, 567, 693 |
| Ppu21I | YACGTR | 1 cut(s) | 596 |
| PscI | ACATGT | 1 cut(s) | 510 |
| PspLI | CGTACG | 1 cut(s) | 26 |
| PsuI | RGATCY | 2 cut(s) | 119, 601 |
| PsyI | GACNNNGTC | 1 cut(s) | 71 |
| RsaI | GTAC | 2 cut(s) | 28, 205 |
| RsaNI | GTAC | 2 cut(s) | 27, 204 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SaqAI | TTAA | 5 cut(s) | 219, 255, 362, 549, 606 |
| SatI | GCNGC | 6 cut(s) | 81, 112, 214, 355, 566, 692 |
| Sau3AI | GATC | 5 cut(s) | 91, 119, 231, 460, 601 |
| ScrFI | CCNGG | 1 cut(s) | 807 |
| SetI | ASST | 7 cut(s) | 75, 390, 435, 562, 598, 736, 771 |
| SfaNI | GCATC | 2 cut(s) | 265, 366 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| SmlI | CTYRAG | 1 cut(s) | 605 |
| SmoI | CTYRAG | 1 cut(s) | 605 |
| SphI | GCATGC | 1 cut(s) | 382 |
| Sse9I | AATT | 2 cut(s) | 21, 755 |
| SsiI | CCGC | 3 cut(s) | 193, 213, 694 |
| SspI | AATATT | 1 cut(s) | 169 |
| SspMI | CTAG | 2 cut(s) | 117, 123 |
| StyD4I | CCNGG | 1 cut(s) | 805 |
| TaaI | ACNGT | 3 cut(s) | 31, 203, 310 |
| TaiI | ACGT | 2 cut(s) | 390, 598 |
| TaqI | TCGA | 6 cut(s) | 64, 327, 459, 503, 729, 764 |
| TaqII | GACCGA | 1 cut(s) | 260 |
| TasI | AATT | 2 cut(s) | 21, 755 |
| TatI | WGTACW | 1 cut(s) | 203 |
| TauI | GCSGC | 1 cut(s) | 216 |
| TfiI | GAWTC | 4 cut(s) | 399, 478, 529, 787 |
| Tru1I | TTAA | 5 cut(s) | 219, 255, 362, 549, 606 |
| Tru9I | TTAA | 5 cut(s) | 219, 255, 362, 549, 606 |
| TscAI | CASTG | 2 cut(s) | 82, 184 |
| TseI | GCWGC | 5 cut(s) | 80, 111, 354, 565, 691 |
| TspDTI | ATGAA | 2 cut(s) | 119, 278 |
| TspGWI | ACGGA | 5 cut(s) | 32, 348, 475, 482, 726 |
| TspRI | CASTG | 2 cut(s) | 82, 184 |
| Tth111I | GACNNNGTC | 1 cut(s) | 71 |
| Vha464I | CTTAAG | 1 cut(s) | 605 |
| XapI | RAATTY | 2 cut(s) | 21, 755 |
| XceI | RCATGY | 2 cut(s) | 382, 514 |
| XspI | CTAG | 2 cut(s) | 117, 123 |
| ZraI | GACGTC | 1 cut(s) | 388 |