Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002080.1

Orthogroup ID

OG0009658

Physical Location & Seq

Genomic Coordinates Reverse (-)

155801 .. 156472

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002080.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgaagtacatatataatggcaaggaagttgattgttcgagtgacgagtttggacaaccgatcccggcaaggacagacttgcttactagtatgagcactgacgacgaggatttggcatttgtcatagtagtggagaaacacagcgtgtttatgcggttggctcaagatttattttggaagaaatttaaatgtatcatgatcaccgccagtggaatgccagatgtgggctctaggtattttctaagaatggcagagacgacgttcaagagacccgtgtatgctctttttgattcaaatccatatggggctaggattctatgtacttatcgttatgggtcagacaacatgtcatatgatagtaagagtttggccaccccgggcataatctggttgggtgtaaggacaaaagacatggagacttacgaaatacctcaagatgacaagtatagggtaaagatgactgaaacagattacaacgagtgtcggtgtttgttaaaagcaaaatatttggtgaacaatgtagaatggcggaacgagctggaagctatgttggaagttggcacgaaaactgaaatcgaggcattgtatgtccatggttacaaatttttggccgaggtctatttaccacataaattgcagaggtacgggatggctttgcagagcattgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

223

Amino Acids

25.94

Weight (kDa)

5.55

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33020 FvH4_3g06060
rosa_chinensis	RchiOBHm_Chr1g0379621 RchiOBHm_Chr5g0010071 RchiOBHm_Chr6g0278391
rosa_laevigata	RLG00000013233
rosa_multiflora	Rmu_sc0002080.1_g000036 Rmu_sc0022226.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280000
rosa_rugosa	Rorug01G0413600 Rorug04G0449100
rosa_samantha	Rh1AG437000 Rh1AG437300 Rh1AG437400 Rh1BG393500 Rh1CG406500 Rh1DG424400 Rh5CG087500 Rh6AG229400 Rh6CG233200 Rh7CG094900 Rh7CG095000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	154, 204, 529
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	2 cut(s)	369, 609
AcsI	RAATTY	2 cut(s)	182, 602
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	3 cut(s)	8, 322, 644
AfiI	CCNNNNNNNGG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	265, 294, 668
AhdI	GACNNNNNGTC	1 cut(s)	346
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	2 cut(s)	538, 545
AluI	AGCT	2 cut(s)	538, 545
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	3 cut(s)	248, 262, 410
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	2 cut(s)	369, 609
ApoI	RAATTY	2 cut(s)	182, 602
AsuC2I	CCSGG	3 cut(s)	65, 377, 378
AsuHPI	GGTGA	2 cut(s)	193, 523
AvaI	CYCGRG	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	98
BccI	CCATC	1 cut(s)	643
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	3 cut(s)	65, 377, 378
BcoDI	GTCTC	3 cut(s)	248, 262, 410
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	3 cut(s)	87, 231, 309
Bme1390I	CCNGG	3 cut(s)	65, 377, 378
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	376
BmrFI	CCNGG	3 cut(s)	65, 377, 378
BpuEI	CTTGAG	2 cut(s)	147, 417
BpuMI	CCSGG	3 cut(s)	65, 377, 378
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	375, 376, 592, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	375, 376, 592, 612
BseGI	GGATG	1 cut(s)	654
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	371, 611
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	65, 377
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	3 cut(s)	248, 262, 410
BsmBI	CGTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	371, 611
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	98, 230
Bsp143I	GATC	2 cut(s)	60, 198
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	3 cut(s)	154, 204, 529
BspANI	GGCC	2 cut(s)	371, 611
BspHI	TCATGA	1 cut(s)	195
BspPI	GGATC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	4 cut(s)	375, 376, 592, 612
BssMI	GATC	2 cut(s)	60, 198
BssT1I	CCWWGG	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	1 cut(s)	654
BstKTI	GATC	2 cut(s)	63, 201
BstMAI	GTCTC	3 cut(s)	248, 262, 410
BstMBI	GATC	2 cut(s)	60, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	3 cut(s)	63, 375, 376
BsuRI	GGCC	2 cut(s)	371, 611
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	96, 214
CciI	TCATGA	1 cut(s)	195
Cfr9I	CCCGGG	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	7, 321, 643
CspCI	CAANNNNNGTGG	2 cut(s)	615, 650
CviAII	CATG	4 cut(s)	196, 346, 412, 593
CviJI	RGCY	8 cut(s)	161, 228, 308, 371, 538, 545, 611, 653
CviKI_1	RGCY	8 cut(s)	161, 228, 308, 371, 538, 545, 611, 653
CviQI	GTAC	3 cut(s)	7, 321, 643
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	62, 200
DpnII	GATC	2 cut(s)	60, 198
DraI	TTTAAA	1 cut(s)	187
DraIII	CACNNNGTG	1 cut(s)	145
DriI	GACNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	2 cut(s)	369, 609
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	592
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	4 cut(s)	199, 349, 415, 596
FatI	CATG	4 cut(s)	195, 345, 411, 592
FauNDI	CATATG	2 cut(s)	301, 352
FbaI	TGATCA	1 cut(s)	198
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	1 cut(s)	230
FspBI	CTAG	3 cut(s)	87, 231, 309
HaeIII	GGCC	2 cut(s)	371, 611
HapII	CCGG	2 cut(s)	65, 377
Hin1II	CATG	4 cut(s)	199, 349, 415, 596
HinfI	GANTC	2 cut(s)	290, 313
HpaII	CCGG	2 cut(s)	65, 377
HphI	GGTGA	2 cut(s)	193, 523
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	4 cut(s)	164, 196, 265, 434
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	2 cut(s)	107, 262
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	637, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	4 cut(s)	199, 349, 415, 596
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	60, 198
LpnPI	CCDG	6 cut(s)	78, 220, 231, 373, 390, 524
MaeI	CTAG	3 cut(s)	87, 231, 309
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	41, 596
MalI	GATC	2 cut(s)	62, 200
MboI	GATC	2 cut(s)	60, 198
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	98, 230
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	3 cut(s)	182, 602, 632
MluNI	TGGCCA	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	5 cut(s)	100, 441, 571, 607, 633
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	2 cut(s)	186, 494
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	2 cut(s)	65, 377
MspR9I	CCNGG	3 cut(s)	65, 377, 378
Mva1269I	GAATGC	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	535
NciI	CCSGG	3 cut(s)	65, 377, 378
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	2 cut(s)	301, 352
NdeII	GATC	2 cut(s)	60, 198
NlaIII	CATG	4 cut(s)	199, 349, 415, 596
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	349
PagI	TCATGA	1 cut(s)	195
PciI	ACATGT	1 cut(s)	345
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	290, 313
PscI	ACATGT	1 cut(s)	345
RsaI	GTAC	3 cut(s)	8, 322, 644
RsaNI	GTAC	3 cut(s)	7, 321, 643
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	186, 494
Sau3AI	GATC	2 cut(s)	60, 198
ScrFI	CCNGG	3 cut(s)	65, 377, 378
SduI	GDGCHC	2 cut(s)	98, 230
SetI	ASST	7 cut(s)	236, 263, 433, 540, 547, 618, 644
SmaI	CCCGGG	1 cut(s)	378
SmiI	ATTTAAAT	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	162, 432
SmoI	CTYRAG	2 cut(s)	162, 432
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	3 cut(s)	182, 602, 632
SsiI	CCGC	3 cut(s)	154, 204, 529
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	3 cut(s)	87, 231, 309
StyD4I	CCNGG	3 cut(s)	63, 375, 376
StyI	CCWWGG	1 cut(s)	592
SwaI	ATTTAAAT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	38, 576
TasI	AATT	3 cut(s)	182, 602, 632
TatI	WGTACW	2 cut(s)	6, 320
TfiI	GAWTC	2 cut(s)	290, 313
Tru1I	TTAA	2 cut(s)	186, 494
Tru9I	TTAA	2 cut(s)	186, 494
TscAI	CASTG	2 cut(s)	103, 214
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	376
TspRI	CASTG	2 cut(s)	103, 214
XapI	RAATTY	2 cut(s)	182, 602
XceI	RCATGY	1 cut(s)	349
XmaI	CCCGGG	1 cut(s)	376
XspI	CTAG	3 cut(s)	87, 231, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.