Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009658

Physical Location & Seq

Genomic Coordinates Forward (+)

66128704 .. 66130442

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGTCGGATGTGATAACTAGAGCCATTTTGAGTCTAATAAGAAGAGAGCTAAAGCTTCCTGTGTTTGCACTTATGGACGGCAATCCACATGGATTGAAGATTAATGGTATTTACCGTTACGGGTCAAAGACCATGTCTCATGACCGTGAGAATTTAACCACACCTGATATTAAGTTGTTGGGCATACGGTACTCGGATATTGTTAAGTATAAAATACCTGAAGCAAGTATAGAGGAGATGACTGAAGCAGATAGAAATATTGCAGATGAATTGTTGGCACTAAAACATATGAAGGATTATCATGGTGACCTGCGATCCATGAAAGATGACAATAAGAAGATACAAATTGAAGATTTCCATTTACATGACATTAAATATTTCGCGGAACTTGCCACCCTAGTTAATTCAGAAAGGATTCTAGTCGAGCAAGGGGAGCGGGTAGAGCGCATTGCAGGGAGTCAGAACAATTTCTTATTGAACACAGATAAGGTGAGAGGGGTTCGACTTATTCGATACAACATATGTCAATACTCAAGCCCAAGACCCTATTATGAGGGTAATATCACATTTGACAATGGTACCGAAAAAGAAGAAAGATTTTTCAAGTTTAAAGAAGAAGAAGTGGCCCAAAAATGTTTTCATGGAGCGTGGAAAATGAATGATGATGGAATTCTGAAGCCTTGGTTTCTTAGTCATCGGAAAGATGATGATACTTGGATTATATGTTACGAGCGATTTGACAATCTACTTAGCGAGTGTTCTGATAATTTGGTTTTGCCTGATAATGATAGTTGGAAGGATTCAGTCTGCAGAAACTCTATGAAGACTGTGAATTATATACATAAGCGTAAACTGTTGCATGAGGGTTTGAGCAAGACATGTAATTACGCTTTGATTGAAGACCTAAAGACTAGAACCATAAAGATCAAAATTATTTATGATAAGGCATGGAGTGTTGATAACTCGTTTAAGGGGACTGATGGATACCTAAACAATTCTGGTTTTTATGGATTGAAGAGATTGAAAGATTGGACCGACTGTAGAGGTGTTCTCAAGGATTTTGTTTTGAAGTCTTTAGGAGAATCAGATGAGACAAATTCATTCTTGGCGTTTTTTTATTATACTGAAGGCGATTTCAGACCGTATGATATATTTGTTAGACAACTCTTAAGTCATCCGTATTTAATGAAATCGGTCAAACGAATGAAGTATCTCATTATGTTTGATCATACATTGCTAGTAGCAAAACCGCTACGTAGATATCGTGCTTTTGCTTTCAAAAGCACGATATCTACGTTTAAAGGGACTGATGGAGGTGTTCTCAAGGATTTTGTTTTGAAGTCTTTGGGAGAATCAGATGAGACAAATTCATTCTTGGCGTTTTTTGATTATACTGAAGGCGATTTCAAGTATGATATCTTCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

476

Amino Acids

55.7

Weight (kDa)

7.18

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	2 - 129	1.7e-27	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33020 FvH4_3g06060
rosa_chinensis	RchiOBHm_Chr1g0379621 RchiOBHm_Chr5g0010071 RchiOBHm_Chr6g0278391
rosa_laevigata	RLG00000013233
rosa_multiflora	Rmu_sc0002080.1_g000036 Rmu_sc0022226.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280000
rosa_rugosa	Rorug01G0413600 Rorug04G0449100
rosa_samantha	Rh1AG437000 Rh1AG437300 Rh1AG437400 Rh1BG393500 Rh1CG406500 Rh1DG424400 Rh5CG087500 Rh6AG229400 Rh6CG233200 Rh7CG094900 Rh7CG095000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	318
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	436
AccII	CGCG	1 cut(s)	383
AciI	CCGC	3 cut(s)	383, 436, 1250
AclWI	GGATC	1 cut(s)	309
AcsI	RAATTY	4 cut(s)	151, 669, 1096, 1366
AcuI	CTGAAG	5 cut(s)	240, 264, 695, 1146, 1416
AfaI	GTAC	2 cut(s)	191, 580
AflII	CTTAAG	1 cut(s)	1168
AflIII	ACRYGT	1 cut(s)	878
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AluBI	AGCT	2 cut(s)	49, 55
AluI	AGCT	2 cut(s)	49, 55
Alw26I	GTCTC	3 cut(s)	141, 1085, 1355
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	1 cut(s)	624
ApoI	RAATTY	4 cut(s)	151, 669, 1096, 1366
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AseI	ATTAAT	1 cut(s)	102
Asp700I	GAANNNNTTC	2 cut(s)	414, 467
Asp718I	GGTACC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	625, 1032
AsuHPI	GGTGA	2 cut(s)	317, 502
AvaII	GGWCC	1 cut(s)	1032
BaeI	ACNNNNGTAYC	2 cut(s)	562, 595
BanI	GGYRCC	1 cut(s)	578
BarI	GAAGNNNNNNTAC	1 cut(s)	1403
BbsI	GAAGAC	2 cut(s)	830, 906
BccI	CCATC	3 cut(s)	659, 974, 1304
BceAI	ACGGC	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	1 cut(s)	1225
BcoDI	GTCTC	3 cut(s)	141, 1085, 1355
BfaI	CTAG	5 cut(s)	18, 398, 419, 912, 1238
BfmI	CTRYAG	2 cut(s)	808, 1039
BfrI	CTTAAG	1 cut(s)	1168
BfuAI	ACCTGC	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	977
Bme18I	GGWCC	1 cut(s)	1032
BmgT120I	GGNCC	2 cut(s)	625, 1032
BmiI	GGNNCC	1 cut(s)	580
BpiI	GAAGAC	2 cut(s)	830, 906
BplI	GAGNNNNNCTC	4 cut(s)	1035, 1067, 1305, 1337
BpuEI	CTTGAG	3 cut(s)	517, 1037, 1307
BsaAI	YACGTR	1 cut(s)	1256
BsaJI	CCNNGG	1 cut(s)	680
Bse3DI	GCAATG	2 cut(s)	447, 1232
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	2 cut(s)	13, 1174
BseMI	GCAATG	2 cut(s)	447, 1232
BseRI	GAGGAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	1 cut(s)	578
BslFI	GGGAC	2 cut(s)	988, 1318
BsmAI	GTCTC	3 cut(s)	141, 1085, 1355
BsmFI	GGGAC	2 cut(s)	988, 1318
BsnI	GGCC	1 cut(s)	626
Bsp143I	GATC	3 cut(s)	314, 924, 1225
BspACI	CCGC	3 cut(s)	383, 436, 1250
BspANI	GGCC	1 cut(s)	626
BspFNI	CGCG	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	580
BspMAI	CTGCAG	1 cut(s)	812
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	578
BspTI	CTTAAG	1 cut(s)	1168
BsrBI	CCGCTC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	447, 1232
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	3 cut(s)	314, 924, 1225
BssT1I	CCWWGG	1 cut(s)	680
Bst4CI	ACNGT	7 cut(s)	116, 146, 189, 829, 855, 1040, 1143
Bst6I	CTCTTC	2 cut(s)	37, 1010
BstAFI	CTTAAG	1 cut(s)	1168
BstBAI	YACGTR	1 cut(s)	1256
BstDEI	CTNAG	2 cut(s)	689, 749
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	13, 1174
BstFNI	CGCG	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	3 cut(s)	317, 927, 1228
BstMAI	GTCTC	3 cut(s)	141, 1085, 1355
BstMBI	GATC	3 cut(s)	314, 924, 1225
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 433, 442
BstNSI	RCATGY	1 cut(s)	882
BstPI	GGTNACC	1 cut(s)	305
BstSFI	CTRYAG	2 cut(s)	808, 1039
BstSNI	TACGTA	1 cut(s)	1256
BstUI	CGCG	1 cut(s)	383
BstV2I	GAAGAC	2 cut(s)	830, 906
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	1 cut(s)	626
BtsCI	GGATG	2 cut(s)	13, 1174
BveI	ACCTGC	1 cut(s)	318
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	447
Cfr13I	GGNCC	2 cut(s)	625, 1032
Csp6I	GTAC	2 cut(s)	190, 579
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviJI	RGCY	6 cut(s)	23, 49, 55, 537, 626, 679
CviKI_1	RGCY	6 cut(s)	23, 49, 55, 537, 626, 679
CviQI	GTAC	2 cut(s)	190, 579
DdeI	CTNAG	2 cut(s)	689, 749
DpnI	GATC	3 cut(s)	316, 926, 1227
DpnII	GATC	3 cut(s)	314, 924, 1225
DraI	TTTAAA	2 cut(s)	610, 1300
Eam1104I	CTCTTC	2 cut(s)	37, 1010
EarI	CTCTTC	2 cut(s)	37, 1010
Eco105I	TACGTA	1 cut(s)	1256
Eco130I	CCWWGG	1 cut(s)	680
Eco32I	GATATC	3 cut(s)	1262, 1290, 1417
Eco47I	GGWCC	1 cut(s)	1032
Eco57I	CTGAAG	5 cut(s)	240, 264, 695, 1146, 1416
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	669
EcoRV	GATATC	3 cut(s)	1262, 1290, 1417
EcoT14I	CCWWGG	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	680
FaqI	GGGAC	2 cut(s)	988, 1318
FauI	CCCGC	1 cut(s)	429
FauNDI	CATATG	2 cut(s)	288, 521
FbaI	TGATCA	1 cut(s)	1225
FokI	GGATG	2 cut(s)	20, 1161
FspBI	CTAG	5 cut(s)	18, 398, 419, 912, 1238
GlaI	GCGC	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	626
HhaI	GCGC	1 cut(s)	447
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	6 cut(s)	31, 415, 457, 800, 1082, 1352
HphI	GGTGA	2 cut(s)	317, 502
Hpy166II	GTNNAC	1 cut(s)	851
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	851
HpyAV	CCTTC	4 cut(s)	286, 790, 1121, 1391
HpyCH4III	ACNGT	7 cut(s)	116, 146, 189, 829, 855, 1040, 1143
HpyCH4IV	ACGT	2 cut(s)	1255, 1295
HpyCH4V	TGCA	5 cut(s)	68, 263, 452, 810, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 433, 442
HpyF3I	CTNAG	2 cut(s)	689, 749
HpySE526I	ACGT	2 cut(s)	1255, 1295
HspAI	GCGC	1 cut(s)	445
KpnI	GGTACC	1 cut(s)	582
Ksp22I	TGATCA	1 cut(s)	1225
Kzo9I	GATC	3 cut(s)	314, 924, 1225
LmnI	GCTCC	2 cut(s)	433, 644
LpnPI	CCDG	7 cut(s)	72, 177, 231, 323, 438, 792, 984
MaeI	CTAG	5 cut(s)	18, 398, 419, 912, 1238
MaeII	ACGT	2 cut(s)	1255, 1295
MaeIII	GTNAC	3 cut(s)	116, 305, 725
MalI	GATC	3 cut(s)	316, 926, 1227
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	3 cut(s)	314, 924, 1225
MlyI	GAGTC	2 cut(s)	40, 466
MmeI	TCCRAC	1 cut(s)	773
MnlI	CCTC	6 cut(s)	226, 488, 547, 856, 1037, 1307
MroXI	GAANNNNTTC	2 cut(s)	414, 467
MslI	CAYNNNNRTG	2 cut(s)	144, 363
MspCI	CTTAAG	1 cut(s)	1168
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	389, 433, 442
NdeI	CATATG	2 cut(s)	288, 521
NdeII	GATC	3 cut(s)	314, 924, 1225
NlaIV	GGNNCC	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	882
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	878
PcsI	WCGNNNNNNNCGW	3 cut(s)	508, 1261, 1292
PdmI	GAANNNNTTC	2 cut(s)	414, 467
PfeI	GAWTC	4 cut(s)	415, 800, 1082, 1352
PflFI	GACNNNGTC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	39, 465
PpsI	GAGTC	2 cut(s)	39, 465
Ppu21I	YACGTR	1 cut(s)	1256
PscI	ACATGT	1 cut(s)	878
PshBI	ATTAAT	1 cut(s)	102
PspEI	GGTNACC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	625, 1032
PstI	CTGCAG	1 cut(s)	812
PsyI	GACNNNGTC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	191, 580
RsaNI	GTAC	2 cut(s)	190, 579
RseI	CAYNNNNRTG	2 cut(s)	144, 363
Sau3AI	GATC	3 cut(s)	314, 924, 1225
Sau96I	GGNCC	2 cut(s)	625, 1032
SchI	GAGTC	2 cut(s)	40, 466
SfcI	CTRYAG	2 cut(s)	808, 1039
SinI	GGWCC	1 cut(s)	1032
SmiMI	CAYNNNNRTG	2 cut(s)	144, 363
SmlI	CTYRAG	4 cut(s)	532, 1052, 1168, 1322
SmoI	CTYRAG	4 cut(s)	532, 1052, 1168, 1322
SnaBI	TACGTA	1 cut(s)	1256
SsiI	CCGC	3 cut(s)	383, 436, 1250
SspI	AATATT	2 cut(s)	259, 377
SspMI	CTAG	5 cut(s)	18, 398, 419, 912, 1238
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	7 cut(s)	116, 146, 189, 829, 855, 1040, 1143
TaiI	ACGT	2 cut(s)	1258, 1298
TaqI	TCGA	3 cut(s)	423, 502, 511
TaqII	GACCGA	2 cut(s)	1049, 1183
TfiI	GAWTC	4 cut(s)	415, 800, 1082, 1352
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	1167
Tth111I	GACNNNGTC	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	1168
VpaK11BI	GGWCC	1 cut(s)	1032
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	4 cut(s)	151, 669, 1096, 1366
XceI	RCATGY	1 cut(s)	882
XmnI	GAANNNNTTC	2 cut(s)	414, 467
XspI	CTAG	5 cut(s)	18, 398, 419, 912, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.