Rorug01G0413600

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009658
Physical Location & Seq
Reverse (-)
51800991 .. 51801791
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0413600.1

Sequence Viewer

Length: 687 bp
ATGCCCACAACTCCTCTCCAACTCTCCGGATTTCTCACCGGAGACACCATTCAAGTCAGAGGCGACACTGGGAATTTGAAATTCTCAATTCAGTTCAACATTCAGGAGAAACATATCTCTGATTACAACAACAGCCTGTTTAACTCTCTTGGTGCAGATGCATCTTACCCCGAAAATGAACATCGTTCATGTCAAAGTTCAAGTTTTTCTTCATATGTGACACCACCAAATGATGTTCAAGAACTGGAGGATCAGCATAGTCAATTTCCTGAAGAGGGTGGGAGTAGTACTGGACCAATTGTGACGAGGCTGAGAAGTGGGGTGATATCTCCAGTGAACTATTTTCCTCGTACATCAATGTTGTCGTCAGGGTTAAGGCCTGGTGGGAAGAAGAGGTATGGAGGAAGGAATCAAAAGACTGATGATGTGTTTGAGACGGTGCTAAGAAGGCATAGGTTTCCCATAAGGCCATGCACTTCTTATGCTTTCTTTGTGATGGCAACTTGGGGTTCTGTTAAATCCTCTTCATTTGGGGAAACAAGTAAGCAACTTGGTCGAATGTGGTGCCAACTCCCTCAAACAAAGAAAAGATTCTACAAGGAGATGGCTATCAAGGACAGCGCAAGGTATAAGAAGCAATGCGTGCAGTTGATGAAAAAGCCAACTCAGAGCACTGCAAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04113 map04113
Pfam Domains
Protein Families
TP6A_N

Protein Analysis

228

Amino Acids

25.75

Weight (kDa)

9.74

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box PF00505 154 - 213 2.7e-06 HMG (high mobility group) box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 26
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 2 cut(s) 73, 80
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 2 cut(s) 289, 352
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 5 cut(s) 53, 79, 97, 201, 239
AjnI CCWGG 1 cut(s) 379
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 2 cut(s) 36, 428
AlwI GGATC 1 cut(s) 258
Aor13HI TCCGGA 1 cut(s) 26
AoxI GGCC 2 cut(s) 377, 467
ApoI RAATTY 2 cut(s) 73, 80
Asp700I GAANNNNTTC 1 cut(s) 590
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 28, 334
AvaII GGWCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 674
BccI CCATC 2 cut(s) 490, 598
BcgI CGANNNNNNTGC 4 cut(s) 536, 546, 570, 580
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 36, 428
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 566
BmrFI CCNGG 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 148, 170
BmuI ACTGGG 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 266, 315
BsaBI GATNNNNATC 1 cut(s) 608
BsaWI WCCGGW 2 cut(s) 26, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 4 cut(s) 73, 249, 295, 332
Bse3DI GCAATG 1 cut(s) 644
Bse8I GATNNNNATC 1 cut(s) 608
BseAI TCCGGA 1 cut(s) 26
BseBI CCWGG 1 cut(s) 381
BseJI GATNNNNATC 1 cut(s) 608
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 644
BseMII CTCAG 2 cut(s) 302, 680
BseNI ACTGG 4 cut(s) 73, 249, 295, 332
BsgI GTGCAG 2 cut(s) 174, 665
BshFI GGCC 2 cut(s) 379, 469
BshNI GGYRCC 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 674
BsiSI CCGG 2 cut(s) 27, 39
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 36, 428
BsmBI CGTCTC 1 cut(s) 428
BsnI GGCC 2 cut(s) 379, 469
Bsp1286I GDGCHC 1 cut(s) 674
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 2 cut(s) 379, 469
BspCNI CTCAG 2 cut(s) 303, 679
BspEI TCCGGA 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 566
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 564
BsrDI GCAATG 1 cut(s) 644
BsrI ACTGG 4 cut(s) 73, 249, 295, 332
BssMI GATC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 3 cut(s) 267, 386, 529
BstAPI GCANNNNNTGC 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 3 cut(s) 311, 443, 666
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 2 cut(s) 36, 428
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 448, 643
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BsuRI GGCC 2 cut(s) 379, 469
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 3 cut(s) 66, 339, 672
Cac8I GCNNGC 1 cut(s) 644
CfoI GCGC 1 cut(s) 623
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 288, 351
CviAII CATG 2 cut(s) 189, 471
CviJI RGCY 6 cut(s) 135, 310, 379, 469, 608, 661
CviKI_1 RGCY 6 cut(s) 135, 310, 379, 469, 608, 661
CviQI GTAC 2 cut(s) 288, 351
DdeI CTNAG 3 cut(s) 311, 443, 666
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 3 cut(s) 267, 386, 529
EarI CTCTTC 3 cut(s) 267, 386, 529
Eco147I AGGCCT 1 cut(s) 379
Eco32I GATATC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 379
EcoRV GATATC 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 2 cut(s) 192, 474
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FatI CATG 2 cut(s) 188, 470
FauNDI CATATG 1 cut(s) 214
GlaI GCGC 1 cut(s) 622
GsuI CTGGAG 2 cut(s) 266, 315
HaeIII GGCC 2 cut(s) 379, 469
HapII CCGG 2 cut(s) 27, 39
HhaI GCGC 1 cut(s) 623
Hin1II CATG 2 cut(s) 192, 474
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HinfI GANTC 2 cut(s) 409, 591
HpaII CCGG 2 cut(s) 27, 39
HphI GGTGA 2 cut(s) 28, 334
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 59, 121, 669
Hpy188III TCNNGA 4 cut(s) 27, 104, 239, 269
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 399, 441
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 5 cut(s) 155, 161, 474, 646, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 448, 643
HpyF3I CTNAG 3 cut(s) 311, 443, 666
Hsp92II CATG 2 cut(s) 192, 474
HspAI GCGC 1 cut(s) 621
Kpn2I TCCGGA 1 cut(s) 26
Kzo9I GATC 1 cut(s) 250
LweI GCATC 2 cut(s) 148, 170
MaeIII GTNAC 2 cut(s) 217, 301
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 5 cut(s) 201, 284, 400, 403, 516
MfeI CAATTG 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 5 cut(s) 73, 80, 87, 263, 297
MmeI TCCRAC 1 cut(s) 43
Mph1103I ATGCAT 1 cut(s) 163
MroI TCCGGA 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 3 cut(s) 141, 374, 516
MspI CCGG 2 cut(s) 27, 39
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 448, 643
NdeI CATATG 1 cut(s) 214
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 192, 474
NlaIV GGNNCC 1 cut(s) 566
NmuCI GTSAC 2 cut(s) 217, 301
NsiI ATGCAT 1 cut(s) 163
PceI AGGCCT 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 409, 591
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 566
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 2 cut(s) 289, 352
RsaNI GTAC 2 cut(s) 288, 351
SaqAI TTAA 3 cut(s) 141, 374, 516
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 674
SetI ASST 3 cut(s) 398, 458, 629
SfaNI GCATC 2 cut(s) 148, 170
SinI GGWCC 1 cut(s) 293
Sse9I AATT 5 cut(s) 73, 80, 87, 263, 297
SseBI AGGCCT 1 cut(s) 379
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 556
TasI AATT 5 cut(s) 73, 80, 87, 263, 297
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 2 cut(s) 409, 591
Tru1I TTAA 3 cut(s) 141, 374, 516
Tru9I TTAA 3 cut(s) 141, 374, 516
TscAI CASTG 3 cut(s) 73, 339, 679
TseFI GTSAC 2 cut(s) 217, 301
Tsp45I GTSAC 2 cut(s) 217, 301
TspDTI ATGAA 5 cut(s) 177, 192, 201, 516, 668
TspRI CASTG 3 cut(s) 73, 339, 679
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 2 cut(s) 73, 80
XmnI GAANNNNTTC 1 cut(s) 590
ZrmI AGTACT 1 cut(s) 289
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.