Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g33020 FvH4_3g06060 |
| rosa_chinensis | RchiOBHm_Chr1g0379621 RchiOBHm_Chr5g0010071 RchiOBHm_Chr6g0278391 |
| rosa_laevigata | RLG00000013233 |
| rosa_multiflora | Rmu_sc0002080.1_g000036 Rmu_sc0022226.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00280000 |
| rosa_rugosa | Rorug01G0413600 Rorug04G0449100 |
| rosa_samantha | Rh1AG437000 Rh1AG437300 Rh1AG437400 Rh1BG393500 Rh1CG406500 Rh1DG424400 Rh5CG087500 Rh6AG229400 Rh6CG233200 Rh7CG094900 Rh7CG095000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 923 |
| AccBSI | CCGCTC | 1 cut(s) | 50 |
| AciI | CCGC | 4 cut(s) | 48, 151, 429, 551 |
| AcoI | YGGCCR | 1 cut(s) | 294 |
| AcsI | RAATTY | 2 cut(s) | 56, 143 |
| AcuI | CTGAAG | 1 cut(s) | 719 |
| AfaI | GTAC | 2 cut(s) | 220, 794 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 59 |
| AflIII | ACRYGT | 1 cut(s) | 161 |
| AgsI | TTSAA | 3 cut(s) | 148, 397, 542 |
| AhlI | ACTAGT | 1 cut(s) | 464 |
| AjnI | CCWGG | 2 cut(s) | 335, 607 |
| Alw26I | GTCTC | 3 cut(s) | 152, 350, 377 |
| Ama87I | CYCGRG | 1 cut(s) | 438 |
| AoxI | GGCC | 2 cut(s) | 81, 294 |
| ApeKI | GCWGC | 2 cut(s) | 238, 330 |
| ApoI | RAATTY | 2 cut(s) | 56, 143 |
| AspS9I | GGNCC | 2 cut(s) | 81, 493 |
| AsuHPI | GGTGA | 2 cut(s) | 395, 416 |
| AvaI | CYCGRG | 1 cut(s) | 438 |
| AvaII | GGWCC | 1 cut(s) | 493 |
| BanII | GRGCYC | 1 cut(s) | 439 |
| BbvI | GCAGC | 2 cut(s) | 250, 317 |
| BccI | CCATC | 3 cut(s) | 82, 413, 551 |
| BceAI | ACGGC | 1 cut(s) | 739 |
| BciT130I | CCWGG | 2 cut(s) | 337, 609 |
| BciVI | GTATCC | 1 cut(s) | 610 |
| BcoDI | GTCTC | 3 cut(s) | 152, 350, 377 |
| BcuI | ACTAGT | 1 cut(s) | 464 |
| BfaI | CTAG | 1 cut(s) | 465 |
| BfmI | CTRYAG | 2 cut(s) | 653, 864 |
| BfuI | GTATCC | 1 cut(s) | 610 |
| BisI | GCNGC | 2 cut(s) | 239, 331 |
| BlsI | GCNGC | 2 cut(s) | 240, 332 |
| Bme1390I | CCNGG | 2 cut(s) | 337, 609 |
| Bme18I | GGWCC | 1 cut(s) | 493 |
| BmeT110I | CYCGRG | 1 cut(s) | 438 |
| BmgT120I | GGNCC | 2 cut(s) | 81, 493 |
| BmiI | GGNNCC | 1 cut(s) | 495 |
| BmrFI | CCNGG | 2 cut(s) | 337, 609 |
| BmrI | ACTGGG | 1 cut(s) | 62 |
| BmuI | ACTGGG | 1 cut(s) | 62 |
| BsaAI | YACGTR | 1 cut(s) | 134 |
| BsaBI | GATNNNNATC | 1 cut(s) | 947 |
| BsaI | GGTCTC | 1 cut(s) | 377 |
| BsaWI | WCCGGW | 1 cut(s) | 593 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 59 |
| Bse1I | ACTGG | 1 cut(s) | 68 |
| Bse3DI | GCAATG | 1 cut(s) | 577 |
| Bse8I | GATNNNNATC | 1 cut(s) | 947 |
| BseBI | CCWGG | 2 cut(s) | 337, 609 |
| BseGI | GGATG | 2 cut(s) | 19, 562 |
| BseJI | GATNNNNATC | 1 cut(s) | 947 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BseMI | GCAATG | 1 cut(s) | 577 |
| BseMII | CTCAG | 1 cut(s) | 215 |
| BseNI | ACTGG | 1 cut(s) | 68 |
| BseRI | GAGGAG | 1 cut(s) | 851 |
| BseXI | GCAGC | 2 cut(s) | 250, 317 |
| BseYI | CCCAGC | 1 cut(s) | 496 |
| BsgI | GTGCAG | 1 cut(s) | 316 |
| BshFI | GGCC | 2 cut(s) | 83, 296 |
| BsiHKCI | CYCGRG | 1 cut(s) | 438 |
| BsiSI | CCGG | 1 cut(s) | 594 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BsmAI | GTCTC | 3 cut(s) | 152, 350, 377 |
| BsnI | GGCC | 2 cut(s) | 83, 296 |
| Bso31I | GGTCTC | 1 cut(s) | 377 |
| BsoBI | CYCGRG | 1 cut(s) | 438 |
| Bsp1286I | GDGCHC | 1 cut(s) | 439 |
| Bsp143I | GATC | 1 cut(s) | 324 |
| BspACI | CCGC | 4 cut(s) | 48, 151, 429, 551 |
| BspANI | GGCC | 2 cut(s) | 83, 296 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspLI | GGNNCC | 1 cut(s) | 495 |
| BspMAI | CTGCAG | 1 cut(s) | 868 |
| BspTNI | GGTCTC | 1 cut(s) | 377 |
| BsrBI | CCGCTC | 1 cut(s) | 50 |
| BsrDI | GCAATG | 1 cut(s) | 577 |
| BsrI | ACTGG | 1 cut(s) | 68 |
| BssMI | GATC | 1 cut(s) | 324 |
| Bst2UI | CCWGG | 2 cut(s) | 337, 609 |
| Bst4CI | ACNGT | 7 cut(s) | 292, 344, 383, 535, 546, 749, 792 |
| BstBAI | YACGTR | 1 cut(s) | 134 |
| BstDEI | CTNAG | 3 cut(s) | 201, 267, 729 |
| BstF5I | GGATG | 2 cut(s) | 19, 562 |
| BstKTI | GATC | 1 cut(s) | 327 |
| BstMAI | GTCTC | 3 cut(s) | 152, 350, 377 |
| BstMBI | GATC | 1 cut(s) | 324 |
| BstNI | CCWGG | 2 cut(s) | 337, 609 |
| BstNSI | RCATGY | 2 cut(s) | 165, 238 |
| BstSCI | CCNGG | 2 cut(s) | 335, 607 |
| BstSFI | CTRYAG | 2 cut(s) | 653, 864 |
| BstSNI | TACGTA | 1 cut(s) | 134 |
| BstV1I | GCAGC | 2 cut(s) | 250, 317 |
| BsuI | GTATCC | 1 cut(s) | 610 |
| BsuRI | GGCC | 2 cut(s) | 83, 296 |
| BtsCI | GGATG | 2 cut(s) | 19, 562 |
| BtsIMutI | CAGTG | 2 cut(s) | 75, 297 |
| Cfr13I | GGNCC | 2 cut(s) | 81, 493 |
| Csp6I | GTAC | 2 cut(s) | 219, 793 |
| CviAII | CATG | 4 cut(s) | 120, 162, 235, 676 |
| CviQI | GTAC | 2 cut(s) | 219, 793 |
| DdeI | CTNAG | 3 cut(s) | 201, 267, 729 |
| DpnI | GATC | 1 cut(s) | 326 |
| DpnII | GATC | 1 cut(s) | 324 |
| DraI | TTTAAA | 1 cut(s) | 814 |
| EaeI | YGGCCR | 1 cut(s) | 294 |
| EciI | GGCGGA | 1 cut(s) | 566 |
| Eco105I | TACGTA | 1 cut(s) | 134 |
| Eco24I | GRGCYC | 1 cut(s) | 439 |
| Eco31I | GGTCTC | 1 cut(s) | 377 |
| Eco47I | GGWCC | 1 cut(s) | 493 |
| Eco57I | CTGAAG | 1 cut(s) | 719 |
| Eco88I | CYCGRG | 1 cut(s) | 438 |
| EcoO109I | RGGNCCY | 1 cut(s) | 493 |
| EcoRI | GAATTC | 1 cut(s) | 143 |
| EcoRII | CCWGG | 2 cut(s) | 335, 607 |
| EcoT38I | GRGCYC | 1 cut(s) | 439 |
| FaeI | CATG | 4 cut(s) | 123, 165, 238, 679 |
| FatI | CATG | 4 cut(s) | 119, 161, 234, 675 |
| Fnu4HI | GCNGC | 2 cut(s) | 239, 331 |
| FokI | GGATG | 2 cut(s) | 26, 569 |
| FriOI | GRGCYC | 1 cut(s) | 439 |
| Fsp4HI | GCNGC | 2 cut(s) | 239, 331 |
| FspBI | CTAG | 1 cut(s) | 465 |
| GluI | GCNGC | 2 cut(s) | 239, 331 |
| GsaI | CCCAGC | 1 cut(s) | 500 |
| HaeIII | GGCC | 2 cut(s) | 83, 296 |
| HapII | CCGG | 1 cut(s) | 594 |
| Hin1II | CATG | 4 cut(s) | 123, 165, 238, 679 |
| HincII | GTYRAC | 1 cut(s) | 843 |
| HindII | GTYRAC | 1 cut(s) | 843 |
| HinfI | GANTC | 5 cut(s) | 4, 116, 624, 880, 1024 |
| HpaII | CCGG | 1 cut(s) | 594 |
| HphI | GGTGA | 2 cut(s) | 395, 416 |
| Hpy166II | GTNNAC | 3 cut(s) | 170, 379, 843 |
| Hpy188I | TCNGA | 2 cut(s) | 204, 799 |
| Hpy188III | TCNNGA | 9 cut(s) | 8, 53, 95, 113, 167, 245, 905, 968, 1033 |
| Hpy8I | GTNNAC | 3 cut(s) | 170, 379, 843 |
| HpyCH4III | ACNGT | 7 cut(s) | 292, 344, 383, 535, 546, 749, 792 |
| HpyCH4IV | ACGT | 3 cut(s) | 133, 312, 829 |
| HpyCH4V | TGCA | 6 cut(s) | 238, 333, 359, 671, 684, 866 |
| HpyF3I | CTNAG | 3 cut(s) | 201, 267, 729 |
| HpySE526I | ACGT | 3 cut(s) | 133, 312, 829 |
| Hsp92II | CATG | 4 cut(s) | 123, 165, 238, 679 |
| Kzo9I | GATC | 1 cut(s) | 324 |
| LmnI | GCTCC | 1 cut(s) | 55 |
| Lsp1109I | GCAGC | 2 cut(s) | 250, 317 |
| MaeI | CTAG | 1 cut(s) | 465 |
| MaeII | ACGT | 3 cut(s) | 133, 312, 829 |
| MaeIII | GTNAC | 3 cut(s) | 383, 719, 965 |
| MalI | GATC | 1 cut(s) | 326 |
| MbiI | CCGCTC | 1 cut(s) | 50 |
| MboI | GATC | 1 cut(s) | 324 |
| MboII | GAAGA | 3 cut(s) | 235, 712, 863 |
| MhlI | GDGCHC | 1 cut(s) | 439 |
| MluCI | AATT | 4 cut(s) | 56, 143, 754, 924 |
| MlyI | GAGTC | 3 cut(s) | 13, 874, 1018 |
| MnlI | CCTC | 7 cut(s) | 4, 120, 434, 547, 562, 829, 889 |
| MseI | TTAA | 6 cut(s) | 38, 306, 758, 813, 927, 987 |
| MspI | CCGG | 1 cut(s) | 594 |
| MspR9I | CCNGG | 2 cut(s) | 337, 609 |
| MvaI | CCWGG | 2 cut(s) | 337, 609 |
| NdeII | GATC | 1 cut(s) | 324 |
| NlaIII | CATG | 4 cut(s) | 123, 165, 238, 679 |
| NlaIV | GGNNCC | 1 cut(s) | 495 |
| NmuCI | GTSAC | 3 cut(s) | 383, 719, 965 |
| NspI | RCATGY | 2 cut(s) | 165, 238 |
| PaeR7I | CTCGAG | 1 cut(s) | 438 |
| PciI | ACATGT | 1 cut(s) | 161 |
| PfeI | GAWTC | 2 cut(s) | 116, 624 |
| PkrI | GCNGC | 2 cut(s) | 240, 332 |
| PleI | GAGTC | 3 cut(s) | 12, 874, 1018 |
| PpsI | GAGTC | 3 cut(s) | 12, 874, 1018 |
| Ppu21I | YACGTR | 1 cut(s) | 134 |
| PpuMI | RGGWCCY | 1 cut(s) | 493 |
| PscI | ACATGT | 1 cut(s) | 161 |
| PsiI | TTATAA | 1 cut(s) | 923 |
| Psp5II | RGGWCCY | 1 cut(s) | 493 |
| Psp6I | CCWGG | 2 cut(s) | 335, 607 |
| PspFI | CCCAGC | 1 cut(s) | 496 |
| PspGI | CCWGG | 2 cut(s) | 335, 607 |
| PspN4I | GGNNCC | 1 cut(s) | 495 |
| PspPI | GGNCC | 2 cut(s) | 81, 493 |
| PspPPI | RGGWCCY | 1 cut(s) | 493 |
| PspXI | VCTCGAGB | 1 cut(s) | 438 |
| PstI | CTGCAG | 1 cut(s) | 868 |
| RsaI | GTAC | 2 cut(s) | 220, 794 |
| RsaNI | GTAC | 2 cut(s) | 219, 793 |
| SaqAI | TTAA | 6 cut(s) | 38, 306, 758, 813, 927, 987 |
| SatI | GCNGC | 2 cut(s) | 239, 331 |
| Sau3AI | GATC | 1 cut(s) | 324 |
| Sau96I | GGNCC | 2 cut(s) | 81, 493 |
| SchI | GAGTC | 3 cut(s) | 13, 874, 1018 |
| ScrFI | CCNGG | 2 cut(s) | 337, 609 |
| SduI | GDGCHC | 1 cut(s) | 439 |
| SfcI | CTRYAG | 2 cut(s) | 653, 864 |
| Sfr274I | CTCGAG | 1 cut(s) | 438 |
| SinI | GGWCC | 1 cut(s) | 493 |
| SlaI | CTCGAG | 1 cut(s) | 438 |
| SmlI | CTYRAG | 1 cut(s) | 438 |
| SmoI | CTYRAG | 1 cut(s) | 438 |
| SnaBI | TACGTA | 1 cut(s) | 134 |
| SpeI | ACTAGT | 1 cut(s) | 464 |
| Sse9I | AATT | 4 cut(s) | 56, 143, 754, 924 |
| SsiI | CCGC | 4 cut(s) | 48, 151, 429, 551 |
| SspI | AATATT | 2 cut(s) | 181, 890 |
| SspMI | CTAG | 1 cut(s) | 465 |
| StyD4I | CCNGG | 2 cut(s) | 335, 607 |
| TaaI | ACNGT | 7 cut(s) | 292, 344, 383, 535, 546, 749, 792 |
| TaiI | ACGT | 3 cut(s) | 136, 315, 832 |
| TaqI | TCGA | 7 cut(s) | 23, 114, 439, 470, 834, 883, 951 |
| TasI | AATT | 4 cut(s) | 56, 143, 754, 924 |
| TfiI | GAWTC | 2 cut(s) | 116, 624 |
| Tru1I | TTAA | 6 cut(s) | 38, 306, 758, 813, 927, 987 |
| Tru9I | TTAA | 6 cut(s) | 38, 306, 758, 813, 927, 987 |
| TscAI | CASTG | 2 cut(s) | 75, 297 |
| TseFI | GTSAC | 3 cut(s) | 383, 719, 965 |
| TseI | GCWGC | 2 cut(s) | 238, 330 |
| Tsp45I | GTSAC | 3 cut(s) | 383, 719, 965 |
| TspDTI | ATGAA | 2 cut(s) | 108, 864 |
| TspGWI | ACGGA | 1 cut(s) | 678 |
| TspRI | CASTG | 2 cut(s) | 75, 297 |
| VpaK11BI | GGWCC | 1 cut(s) | 493 |
| XapI | RAATTY | 2 cut(s) | 56, 143 |
| XceI | RCATGY | 2 cut(s) | 165, 238 |
| XhoI | CTCGAG | 1 cut(s) | 438 |
| XspI | CTAG | 1 cut(s) | 465 |