Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Forward (+)

25030473 .. 25031658

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGCTCGTTCAGGACTTCGTTTGGACGGCGTCGGTGGCGCTCATCCTCTCCTTCTTCGTCGCCAAGCTCGTCGCCATCGCCATGGCGGACCGCGAACCCGAACCGTCGGAGTTCAAATCCACTGAGAGCGCCGGCGATGGAGTCGAAGAGGTTTATCGGAGCCAGAGGAGCGTTCAACTTCAATTCGCCGCCGCTCAAGTGCAAGAGGTTGATCGGTTCCAAGTTAAACCGGTCGAAGAGGCCGTTGGAGTTGCGGAGAAATCCGACGACGGCGAGGAGGTGTCGGTTGAGAAAGCGATTGACTCTGATCGTCGACGTGGCCACGAGGATGAGGAAATTTCGGAGGATAGACAAGTGGATGCGCAATCAGCACGGAACGACGTCGTTACTGCACATGAAGCGGTTGAGGTCAAATCGGTAAGTTACAGCGATGAAGATGACTGGGAAGGAATTGAGAAGAGTGAGCTGGATGAAGGCTATACTGCGGCGGTGAAATCCGAGGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

171

Amino Acids

18.76

Weight (kDa)

4.22

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
Acc16I	TGCGCA	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	316
AccII	CGCG	1 cut(s)	96
AciI	CCGC	8 cut(s)	89, 94, 192, 195, 257, 404, 488, 491
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	339
AcyI	GRCGYC	2 cut(s)	32, 384
AgeI	ACCGGT	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	118, 179, 185
AjiI	CACGTC	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	7, 70, 469
AluI	AGCT	3 cut(s)	7, 70, 469
Alw21I	GWGCWC	1 cut(s)	9
AoxI	GGCC	2 cut(s)	243, 322
ApoI	RAATTY	1 cut(s)	339
AsiGI	ACCGGT	1 cut(s)	232
AspLEI	GCGC	3 cut(s)	43, 134, 367
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	86, 134
BceAI	ACGGC	3 cut(s)	45, 230, 289
BfoI	RGCGCY	2 cut(s)	44, 135
BisI	GCNGC	3 cut(s)	192, 195, 489
BlsI	GCNGC	3 cut(s)	193, 196, 490
Bme18I	GGWCC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	164, 221
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	183
BsaHI	GRCGYC	2 cut(s)	32, 384
BsaJI	CCNNGG	2 cut(s)	84, 501
BsaWI	WCCGGW	1 cut(s)	232
Bse118I	RCCGGY	2 cut(s)	134, 232
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	84, 501
BseGI	GGATG	4 cut(s)	45, 337, 367, 478
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	2 cut(s)	184, 293
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	245, 324
BshTI	ACCGGT	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	135, 233
BsnI	GGCC	2 cut(s)	245, 324
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	214, 310
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	8 cut(s)	89, 94, 192, 195, 257, 404, 488, 491
BspANI	GGCC	2 cut(s)	245, 324
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	164, 221
BsrBI	CCGCTC	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	134, 232
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	2 cut(s)	134, 232
BssECI	CCNNGG	2 cut(s)	84, 501
BssMI	GATC	2 cut(s)	214, 310
BssNI	GRCGYC	2 cut(s)	32, 384
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	3 cut(s)	144, 234, 455
BstACI	GRCGYC	2 cut(s)	32, 384
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	4 cut(s)	45, 337, 367, 478
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	2 cut(s)	44, 135
BstHHI	GCGC	3 cut(s)	43, 134, 367
BstKTI	GATC	2 cut(s)	217, 313
BstMBI	GATC	2 cut(s)	214, 310
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 171, 371, 401
BstUI	CGCG	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	245, 324
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	3 cut(s)	64, 153, 447
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	45, 337, 367, 478
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	3 cut(s)	43, 134, 367
Cfr10I	RCCGGY	2 cut(s)	134, 232
Cfr13I	GGNCC	1 cut(s)	91
CpoI	CGGWCCG	1 cut(s)	91
CseI	GACGC	1 cut(s)	21
CspAI	ACCGGT	1 cut(s)	232
CspI	CGGWCCG	1 cut(s)	91
CviAII	CATG	2 cut(s)	85, 398
CviJI	RGCY	7 cut(s)	7, 70, 165, 245, 324, 469, 480
CviKI_1	RGCY	7 cut(s)	7, 70, 165, 245, 324, 469, 480
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	216, 312
DpnII	GATC	2 cut(s)	214, 310
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	3 cut(s)	144, 234, 455
EarI	CTCTTC	3 cut(s)	144, 234, 455
EciI	GGCGGA	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	88, 401
FaiI	YATR	3 cut(s)	86, 399, 483
FatI	CATG	2 cut(s)	84, 397
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	3 cut(s)	192, 195, 489
FokI	GGATG	4 cut(s)	32, 344, 374, 485
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	192, 195, 489
FspI	TGCGCA	1 cut(s)	366
GlaI	GCGC	3 cut(s)	42, 133, 366
GluI	GCNGC	3 cut(s)	192, 195, 489
HaeII	RGCGCY	2 cut(s)	44, 135
HaeIII	GGCC	2 cut(s)	245, 324
HapII	CCGG	2 cut(s)	135, 233
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	3 cut(s)	43, 134, 367
Hin1I	GRCGYC	2 cut(s)	32, 384
Hin1II	CATG	2 cut(s)	88, 401
Hin6I	GCGC	3 cut(s)	41, 132, 365
HinP1I	GCGC	3 cut(s)	41, 132, 365
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HinfI	GANTC	2 cut(s)	144, 305
HpaII	CCGG	2 cut(s)	135, 233
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	6 cut(s)	112, 162, 268, 310, 346, 502
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	64, 443, 470
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	2 cut(s)	319, 384
HpyCH4V	TGCA	2 cut(s)	205, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 171, 371, 401
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	319, 384
Hsp92I	GRCGYC	2 cut(s)	32, 384
Hsp92II	CATG	2 cut(s)	88, 401
HspAI	GCGC	3 cut(s)	41, 132, 365
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	214, 310
LmnI	GCTCC	3 cut(s)	4, 162, 171
LpnPI	CCDG	5 cut(s)	148, 179, 246, 430, 455
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	2 cut(s)	319, 384
MaeIII	GTNAC	2 cut(s)	388, 425
MalI	GATC	2 cut(s)	216, 312
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	2 cut(s)	214, 310
MboII	GAAGA	5 cut(s)	49, 161, 251, 449, 472
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	3 cut(s)	185, 339, 453
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	153, 299
MmeI	TCCRAC	3 cut(s)	90, 229, 291
Mox20I	TGGCCA	1 cut(s)	324
MreI	CGCCGGCG	1 cut(s)	134
MroNI	GCCGGC	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	83, 330
Msp20I	TGGCCA	1 cut(s)	324
MspI	CCGG	2 cut(s)	135, 233
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	38, 171, 371, 401
NaeI	GCCGGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	214, 310
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	88, 401
NlaIV	GGNNCC	2 cut(s)	164, 221
NsbI	TGCGCA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 243
PdiI	GCCGGC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	31
PinAI	ACCGGT	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	193, 196, 490
PleI	GAGTC	2 cut(s)	152, 299
PpsI	GAGTC	2 cut(s)	152, 299
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	164, 221
PspPI	GGNCC	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	83, 330
Rsr2I	CGGWCCG	1 cut(s)	91
RsrII	CGGWCCG	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	192, 195, 489
Sau3AI	GATC	2 cut(s)	214, 310
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	153, 299
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	9, 72, 156, 213, 285, 322, 387, 414, 471
SfaNI	GCATC	1 cut(s)	352
SgrAI	CRCCGGYG	1 cut(s)	134
SgrDI	CGTCGACG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	2 cut(s)	83, 330
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	3 cut(s)	185, 339, 453
SsiI	CCGC	8 cut(s)	89, 94, 192, 195, 257, 404, 488, 491
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	2 cut(s)	322, 387
TaqI	TCGA	3 cut(s)	147, 237, 316
TasI	AATT	3 cut(s)	185, 339, 453
TauI	GCSGC	3 cut(s)	194, 197, 491
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	414, 450, 489
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	130
Tth111I	GACNNNGTC	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	316
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.