Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Forward (+)

7253078 .. 7254934

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1087700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGACCTCGTTCAGGACCTGTTTCTGACGGCGTCGCTGGCTCTGATCCTCTCTTTTCTCGTCGCCAAGCTCGTCGCCCTGGCGGTTGCTGGCCGCGAATCGGAGGCGGAGCTCGGGGAGGGTGGGAATGGCGGCGGTGAAGGAGTTGGCGTGGAGGAGGTGAGCTTCGAGGAGAGGAGGCTGAAAGTGGAAGGGGCTTTTCGAGGTCAGAGTCAGAGGAGGGTGGAGCTTGAAGGAGAAGTGAAGGAAGTCGTTCGATTCGAAGGGGAAGCGGTTCATCAGGCTGAGGAGATTGCGGAGCCGCTGCAGCAGCATCGAGAAGGTCGTGGATTGACGGAGGAGATGTTGGAGGAAGAGTCGGTGGCGGTTCAGTCGGTGGCGGTTGTATTGCCGGAGAAATCGTCAGTGGCGGTAGGATTGCCGGAGAAGTGGTCAGATGGCGGGGAATTTGAAGAGGAAGCGGTTCATCGGGCTGAGGTGATTGTGGAGCCGCTGCAGCAGCATCGAGAAGGTCGTAGATTGACGGAGGAGGAGTCGGTGGCGGTTGTATTGCCGGAGAAGTCGTCAGTGGCGGTTGGATTGCCGGAGAAGCGGTCGGATGGCGGGGAAATGGAGAAAGCGAGCGAGTTCGATCGCGGATGCTCGGAAAACAGAGAAGCGGAAGAAATTGGCGCGAAGTCAGCAGGAAACGACGCCGTTGCCGAACAGTCGGAGATGGTTAGGGTTGTCGATTGCGAGGAAACTAAGGAGAAGACACACGTGGCGCCAATTGAGGTTAAATCGGGAGATTTCAGTGACGAGGATGATTGGGAGGGGATCGAGAAGAGTGAGTTGGATGATGAATACGCTGCGGCGGTGAAATCTGACGGACACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

293

Amino Acids

31.82

Weight (kDa)

4.41

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	763
AccII	CGCG	3 cut(s)	96, 636, 674
AclWI	GGATC	2 cut(s)	40, 824
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	446
AcvI	CACGTG	1 cut(s)	760
AcyI	GRCGYC	3 cut(s)	32, 693, 764
AfiI	CCNNNNNNNGG	2 cut(s)	13, 100
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	2 cut(s)	233, 452
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	4 cut(s)	70, 112, 165, 229
AluI	AGCT	4 cut(s)	70, 112, 165, 229
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	40, 824
AlwNI	CAGNNNCTG	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	7 cut(s)	304, 307, 310, 493, 496, 499, 848
ApoI	RAATTY	1 cut(s)	446
Asp700I	GAANNNNTTC	3 cut(s)	252, 273, 462
AspLEI	GCGC	2 cut(s)	674, 766
AspS9I	GGNCC	2 cut(s)	4, 16
AsuHPI	GGTGA	4 cut(s)	149, 172, 490, 868
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	4, 16
BanI	GGYRCC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	114
BbrPI	CACGTG	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	2 cut(s)	285, 474
BbvI	GCAGC	7 cut(s)	291, 319, 322, 480, 508, 511, 835
BccI	CCATC	3 cut(s)	431, 593, 709
BceAI	ACGGC	2 cut(s)	45, 680
BcgI	CGANNNNNNTGC	6 cut(s)	296, 330, 485, 519, 680, 714
BciT130I	CCWGG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	305, 494
BfoI	RGCGCY	1 cut(s)	767
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	2 cut(s)	4, 16
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	4, 16
BmiI	GGNNCC	3 cut(s)	300, 489, 765
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	322, 511, 629
BpiI	GAAGAC	1 cut(s)	758
Bpu10I	CCTNAGC	2 cut(s)	285, 474
Bpu14I	TTCGAA	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	760
BsaHI	GRCGYC	3 cut(s)	32, 693, 764
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 100
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	4 cut(s)	604, 644, 808, 841
BseLI	CCNNNNNNNGG	2 cut(s)	13, 100
BseMII	CTCAG	2 cut(s)	276, 465
BseRI	GAGGAG	8 cut(s)	170, 185, 190, 232, 302, 353, 542, 545
BseXI	GCAGC	7 cut(s)	291, 319, 322, 480, 508, 511, 835
Bsh1236I	CGCG	3 cut(s)	96, 636, 674
Bsh1285I	CGRYCG	2 cut(s)	596, 634
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	763
BsiEI	CGRYCG	2 cut(s)	596, 634
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	392, 422, 554, 584
BslI	CCNNNNNNNGG	2 cut(s)	13, 100
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	45, 631, 816
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	277, 466
BspFNI	CGCG	3 cut(s)	96, 636, 674
BspLI	GGNNCC	3 cut(s)	300, 489, 765
BspMAI	CTGCAG	2 cut(s)	309, 498
BspPI	GGATC	2 cut(s)	40, 824
BspT104I	TTCGAA	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	763
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	45, 631, 816
BssNI	GRCGYC	3 cut(s)	32, 693, 764
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	3 cut(s)	348, 447, 818
BstACI	GRCGYC	3 cut(s)	32, 693, 764
BstBAI	YACGTR	1 cut(s)	760
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	39, 91, 622
BstDEI	CTNAG	3 cut(s)	285, 474, 744
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstF5I	GGATG	4 cut(s)	604, 644, 808, 841
BstFNI	CGCG	3 cut(s)	96, 636, 674
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	674, 766
BstKTI	GATC	3 cut(s)	48, 634, 819
BstMBI	GATC	3 cut(s)	45, 631, 816
BstMCI	CGRYCG	2 cut(s)	596, 634
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 307, 310, 496, 499, 589, 680
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	2 cut(s)	305, 494
BstUI	CGCG	3 cut(s)	96, 636, 674
BstV1I	GCAGC	7 cut(s)	291, 319, 322, 480, 508, 511, 835
BstV2I	GAAGAC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	4 cut(s)	604, 644, 808, 841
BtsIMutI	CAGTG	3 cut(s)	411, 573, 799
Cac8I	GCNNGC	3 cut(s)	39, 91, 622
CaiI	CAGNNNCTG	1 cut(s)	19
CfoI	GCGC	2 cut(s)	674, 766
Cfr13I	GGNCC	2 cut(s)	4, 16
CseI	GACGC	2 cut(s)	21, 701
DdeI	CTNAG	3 cut(s)	285, 474, 744
DinI	GGCGCC	1 cut(s)	765
DpnI	GATC	3 cut(s)	47, 633, 818
DpnII	GATC	3 cut(s)	45, 631, 816
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	3 cut(s)	348, 447, 818
EarI	CTCTTC	3 cut(s)	348, 447, 818
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	4, 16
Eco53kI	GAGCTC	1 cut(s)	112
Eco72I	CACGTG	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	114
EgeI	GGCGCC	1 cut(s)	765
EheI	GGCGCC	1 cut(s)	765
FauI	CCCGC	2 cut(s)	434, 596
FokI	GGATG	4 cut(s)	611, 651, 815, 848
FriOI	GRGCYC	1 cut(s)	114
GlaI	GCGC	2 cut(s)	673, 765
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	4 cut(s)	392, 422, 554, 584
HgaI	GACGC	2 cut(s)	21, 701
HhaI	GCGC	2 cut(s)	674, 766
Hin1I	GRCGYC	3 cut(s)	32, 693, 764
Hin6I	GCGC	2 cut(s)	672, 764
HinP1I	GCGC	2 cut(s)	672, 764
HinfI	GANTC	5 cut(s)	98, 211, 258, 356, 533
HpaII	CCGG	4 cut(s)	392, 422, 554, 584
HphI	GGTGA	4 cut(s)	149, 172, 490, 868
Hpy188III	TCNNGA	5 cut(s)	14, 317, 506, 783, 820
Hpy99I	CGWCG	4 cut(s)	37, 65, 77, 695
HpyAV	CCTTC	7 cut(s)	134, 185, 227, 238, 257, 314, 503
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	2 cut(s)	307, 496
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 307, 310, 496, 499, 589, 680
HpyF3I	CTNAG	3 cut(s)	285, 474, 744
HpySE526I	ACGT	1 cut(s)	759
Hsp92I	GRCGYC	3 cut(s)	32, 693, 764
HspAI	GCGC	2 cut(s)	672, 764
KasI	GGCGCC	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	45, 631, 816
LmnI	GCTCC	4 cut(s)	109, 226, 298, 487
Lsp1109I	GCAGC	7 cut(s)	291, 319, 322, 480, 508, 511, 835
LweI	GCATC	3 cut(s)	322, 511, 629
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	3 cut(s)	47, 633, 818
MboI	GATC	3 cut(s)	45, 631, 816
MboII	GAAGA	5 cut(s)	365, 464, 674, 763, 835
MfeI	CAATTG	1 cut(s)	768
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	446, 666, 768
Mly113I	GGCGCC	1 cut(s)	764
MlyI	GAGTC	3 cut(s)	220, 365, 542
MmeI	TCCRAC	5 cut(s)	327, 556, 576, 690, 813
MroXI	GAANNNNTTC	3 cut(s)	252, 273, 462
MseI	TTAA	1 cut(s)	777
MspA1I	CMGCKG	2 cut(s)	304, 493
MspI	CCGG	4 cut(s)	392, 422, 554, 584
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	3 cut(s)	96, 636, 674
MwoI	GCNNNNNNNGC	7 cut(s)	38, 307, 310, 496, 499, 589, 680
NarI	GGCGCC	1 cut(s)	764
NdeII	GATC	3 cut(s)	45, 631, 816
NlaIV	GGNNCC	3 cut(s)	300, 489, 765
NmuCI	GTSAC	1 cut(s)	794
NspV	TTCGAA	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	5 cut(s)	69, 258, 322, 511, 699
PdmI	GAANNNNTTC	3 cut(s)	252, 273, 462
PfeI	GAWTC	2 cut(s)	98, 258
PflFI	GACNNNGTC	1 cut(s)	31
Ple19I	CGATCG	1 cut(s)	634
PleI	GAGTC	3 cut(s)	219, 364, 541
PluTI	GGCGCC	1 cut(s)	767
PmaCI	CACGTG	1 cut(s)	760
PmlI	CACGTG	1 cut(s)	760
PpsI	GAGTC	3 cut(s)	219, 364, 541
Ppu21I	YACGTR	1 cut(s)	760
PpuMI	RGGWCCY	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	300, 489, 765
PspPI	GGNCC	2 cut(s)	4, 16
PspPPI	RGGWCCY	1 cut(s)	16
PstI	CTGCAG	2 cut(s)	309, 498
PstNI	CAGNNNCTG	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	31
PvuI	CGATCG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	777
Sau3AI	GATC	3 cut(s)	45, 631, 816
Sau96I	GGNCC	2 cut(s)	4, 16
SchI	GAGTC	3 cut(s)	220, 365, 542
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	3 cut(s)	322, 511, 629
SfcI	CTRYAG	2 cut(s)	305, 494
SfoI	GGCGCC	1 cut(s)	765
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	2 cut(s)	4, 16
Sse9I	AATT	3 cut(s)	446, 666, 768
SspDI	GGCGCC	1 cut(s)	763
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	9 cut(s)	168, 202, 256, 261, 316, 505, 630, 729, 819
TasI	AATT	3 cut(s)	446, 666, 768
TauI	GCSGC	5 cut(s)	96, 135, 304, 493, 854
TfiI	GAWTC	2 cut(s)	98, 258
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	3 cut(s)	411, 573, 799
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	7 cut(s)	304, 307, 310, 493, 496, 499, 848
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	3 cut(s)	266, 455, 855
TspGWI	ACGGA	2 cut(s)	350, 539
TspRI	CASTG	3 cut(s)	411, 573, 799
Tth111I	GACNNNGTC	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	4, 16
XagI	CCTNNNNNAGG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	446
XmnI	GAANNNNTTC	3 cut(s)	252, 273, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.