Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Forward (+)

2700503 .. 2701123

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGCTCGTTCAGGACTTGGTTTGGACCGCCTCGGTGGCCCTGATCCTCTCTTTCTTCGTCGCCAAGCTCGTCGCGATCGCCTTGGCGGACCGCGAACCGGAATCGGAGTTCAAGGTCAGTGAGAGTGTCGGCGATGGAGTCGTTATGGAGGAGGTGATATTCGAAGAGAGGCTGAGAGTCGAAGAGGTTTATCAGAGCCAGAGGAGGGTTGAATTCGCCGCAGAAGTGAAGGAGGTTGATCGATTCGAAAGTAAACCGGTTCGTCCGGTCGAGGAAGTCGTCGAATCGGTTCAGCACAGTCAAGGAGGAGAAGAGTCAGCGGCCGTTGAAATTGCAAGGAAATCCGACGACGGCGAGAAGGTGTCGGTTGAGAAACCGAATGACTCTGATCGTCAACGTGGCCGTGATGAGGATCAGGAAATTTCGGAGAACATACTACGGGAAGAAATTGGTCAGCAATCAGCACCAAACGACGTCGTTACAGCACATTGCAGTGAAGCAAAGGGAAAGATCGAAGCGGTTGAGGTGAAATCGGAAAATTACAGCGATGAAGATGACTGGGAAGGGATTGAGAAGAGTGAGCTGGATGAGGGTTATACTGCGGCGGTGAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

206

Amino Acids

23.05

Weight (kDa)

4.34

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	480
AccII	CGCG	2 cut(s)	77, 96
AciI	CCGC	8 cut(s)	30, 89, 94, 222, 323, 521, 605, 608
AclWI	GGATC	2 cut(s)	40, 423
AcoI	YGGCCR	2 cut(s)	324, 403
AcsI	RAATTY	2 cut(s)	215, 423
AcyI	GRCGYC	1 cut(s)	477
AfiI	CCNNNNNNNGG	3 cut(s)	100, 208, 412
AgeI	ACCGGT	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	115, 215, 332
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	7, 70, 586
AluI	AGCT	3 cut(s)	7, 70, 586
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	40, 423
AoxI	GGCC	3 cut(s)	39, 324, 403
ApoI	RAATTY	2 cut(s)	215, 423
AsiGI	ACCGGT	1 cut(s)	259
AsiSI	GCGATCGC	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	3 cut(s)	27, 40, 91
AsuHPI	GGTGA	2 cut(s)	169, 541
AsuII	TTCGAA	2 cut(s)	165, 249
AvaII	GGWCC	2 cut(s)	27, 91
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	3 cut(s)	311, 370, 390
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	3 cut(s)	222, 324, 606
BlsI	GCNGC	3 cut(s)	223, 325, 607
Bme18I	GGWCC	2 cut(s)	27, 91
BmgT120I	GGNCC	3 cut(s)	27, 40, 91
BmrI	ACTGGG	1 cut(s)	571
BmuI	ACTGGG	1 cut(s)	571
Bpu14I	TTCGAA	2 cut(s)	165, 249
Bsa29I	ATCGAT	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	33, 84
BsaWI	WCCGGW	3 cut(s)	100, 259, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 208, 412
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	414
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	33, 84
BseGI	GGATG	1 cut(s)	595
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	3 cut(s)	100, 208, 412
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	3 cut(s)	167, 220, 324
BseX3I	CGGCCG	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	77, 96
Bsh1285I	CGRYCG	3 cut(s)	81, 273, 327
BshFI	GGCC	3 cut(s)	41, 326, 405
BshTI	ACCGGT	1 cut(s)	259
BshVI	ATCGAT	1 cut(s)	244
BsiEI	CGRYCG	3 cut(s)	81, 273, 327
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	101, 260, 269
BslI	CCNNNNNNNGG	3 cut(s)	100, 208, 412
BsnI	GGCC	3 cut(s)	41, 326, 405
Bsp119I	TTCGAA	2 cut(s)	165, 249
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	8 cut(s)	30, 89, 94, 222, 323, 521, 605, 608
BspANI	GGCC	3 cut(s)	41, 326, 405
BspCNI	CTCAG	1 cut(s)	168
BspDI	ATCGAT	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	77, 96
BspPI	GGATC	2 cut(s)	40, 423
BspT104I	TTCGAA	2 cut(s)	165, 249
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	33, 84
BssMI	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	4 cut(s)	162, 180, 309, 572
BstACI	GRCGYC	1 cut(s)	477
BstBI	TTCGAA	2 cut(s)	165, 249
BstDEI	CTNAG	2 cut(s)	176, 618
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	2 cut(s)	77, 96
BstKTI	GATC	6 cut(s)	48, 81, 244, 394, 418, 516
BstMBI	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
BstMCI	CGRYCG	3 cut(s)	81, 273, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstUI	CGCG	2 cut(s)	77, 96
BstZI	CGGCCG	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	41, 326, 405
BsuTUI	ATCGAT	1 cut(s)	244
BtgZI	GCGATG	2 cut(s)	150, 564
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	2 cut(s)	127, 502
BtuMI	TCGCGA	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	3 cut(s)	27, 40, 91
ClaI	ATCGAT	1 cut(s)	244
CpoI	CGGWCCG	1 cut(s)	91
CspAI	ACCGGT	1 cut(s)	259
CspI	CGGWCCG	1 cut(s)	91
CviJI	RGCY	8 cut(s)	7, 41, 70, 175, 201, 326, 405, 586
CviKI_1	RGCY	8 cut(s)	7, 41, 70, 175, 201, 326, 405, 586
DdeI	CTNAG	2 cut(s)	176, 618
DpnI	GATC	6 cut(s)	47, 80, 243, 393, 417, 515
DpnII	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
EaeI	YGGCCR	2 cut(s)	324, 403
EagI	CGGCCG	1 cut(s)	324
Eam1104I	CTCTTC	4 cut(s)	162, 180, 309, 572
EarI	CTCTTC	4 cut(s)	162, 180, 309, 572
EciI	GGCGGA	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	27, 91
Eco52I	CGGCCG	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	3 cut(s)	149, 437, 600
Fnu4HI	GCNGC	3 cut(s)	222, 324, 606
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	222, 324, 606
GluI	GCNGC	3 cut(s)	222, 324, 606
HaeIII	GGCC	3 cut(s)	41, 326, 405
HapII	CCGG	3 cut(s)	101, 260, 269
Hin1I	GRCGYC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	7 cut(s)	104, 141, 180, 246, 287, 317, 386
HpaII	CCGG	3 cut(s)	101, 260, 269
HphI	GGTGA	2 cut(s)	169, 541
Hpy166II	GTNNAC	2 cut(s)	257, 398
Hpy188I	TCNGA	6 cut(s)	109, 198, 349, 391, 430, 538
Hpy188III	TCNNGA	3 cut(s)	14, 76, 419
Hpy8I	GTNNAC	2 cut(s)	257, 398
Hpy99I	CGWCG	7 cut(s)	65, 77, 287, 353, 356, 479, 482
HpyAV	CCTTC	3 cut(s)	226, 355, 560
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	400, 477
HpyCH4V	TGCA	2 cut(s)	338, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	176, 618
HpySE526I	ACGT	2 cut(s)	400, 477
Hsp92I	GRCGYC	1 cut(s)	477
Kzo9I	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	56, 114, 215, 273, 282, 404, 547, 572
MaeII	ACGT	2 cut(s)	400, 477
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	6 cut(s)	47, 80, 243, 393, 417, 515
MboI	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
MboII	GAAGA	7 cut(s)	49, 179, 197, 326, 458, 566, 589
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	5 cut(s)	215, 333, 423, 450, 541
MlyI	GAGTC	4 cut(s)	150, 189, 326, 380
MmeI	TCCRAC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	3 cut(s)	101, 260, 269
MvnI	CGCG	2 cut(s)	77, 96
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
NruI	TCGCGA	1 cut(s)	77
NspV	TTCGAA	2 cut(s)	165, 249
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 279
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	104, 246, 287
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	223, 325, 607
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	4 cut(s)	149, 188, 325, 380
PpsI	GAGTC	4 cut(s)	149, 188, 325, 380
Psp124BI	GAGCTC	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	27, 40, 91
PvuI	CGATCG	1 cut(s)	81
RgaI	GCGATCGC	1 cut(s)	81
RruI	TCGCGA	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	495
Rsr2I	CGGWCCG	1 cut(s)	91
RsrII	CGGWCCG	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	9
SatI	GCNGC	3 cut(s)	222, 324, 606
Sau3AI	GATC	6 cut(s)	45, 78, 241, 391, 415, 513
Sau96I	GGNCC	3 cut(s)	27, 40, 91
SchI	GAGTC	4 cut(s)	150, 189, 326, 380
SduI	GDGCHC	1 cut(s)	9
SfaAI	GCGATCGC	1 cut(s)	81
SfuI	TTCGAA	2 cut(s)	165, 249
SgfI	GCGATCGC	1 cut(s)	81
SinI	GGWCC	2 cut(s)	27, 91
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	5 cut(s)	215, 333, 423, 450, 541
SsiI	CCGC	8 cut(s)	30, 89, 94, 222, 323, 521, 605, 608
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	403, 480
TaqI	TCGA	7 cut(s)	165, 183, 244, 249, 273, 285, 516
TasI	AATT	5 cut(s)	215, 333, 423, 450, 541
TauI	GCSGC	3 cut(s)	224, 326, 608
TfiI	GAWTC	3 cut(s)	104, 246, 287
TscAI	CASTG	2 cut(s)	127, 502
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	127, 502
VpaK11BI	GGWCC	2 cut(s)	27, 91
XapI	RAATTY	2 cut(s)	215, 423
XmnI	GAANNNNTTC	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.