Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007504.1

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Forward (+)

10069 .. 10745

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007504.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgtcgacgacaacgaatggacacggcaccgagttgattgccattttcactggaccttcagaccagctatgggaaaatggaagaatacaaagaaaaaaaatgccaaagtaccctaggccccaatccttttggtgtacttacatggggaccgtgaaaccgaatgactctgatcgtcaacgtggccgagatgaggatcaggaaatttcggagaatttactacgggaagaaattgatccgcaatcagcaccaaacgacgtcgttacagcacattgcagtgaagcaaagggaaagatcgaagcggttgaggtgaaatcggaaaattacagcgatgaagatgactgggaagggattgagaagagtgagctggatgaaggttatgctgcggcggtgaaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

4.6

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	4 cut(s)	236, 299, 383, 386
AclWI	GGATC	2 cut(s)	201, 227
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	201, 211
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	110, 136
AfiI	CCNNNNNNNGG	2 cut(s)	70, 190
AluBI	AGCT	2 cut(s)	67, 364
AluI	AGCT	2 cut(s)	67, 364
AlwI	GGATC	2 cut(s)	201, 227
AoxI	GGCC	2 cut(s)	116, 181
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	201, 211
AspA2I	CCTAGG	1 cut(s)	113
AspS9I	GGNCC	3 cut(s)	53, 117, 147
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	53, 147
AvrII	CCTAGG	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	381, 384
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	2 cut(s)	382, 385
Bme18I	GGWCC	2 cut(s)	53, 147
BmgT120I	GGNCC	3 cut(s)	53, 117, 147
BmiI	GGNNCC	3 cut(s)	28, 119, 148
BmrI	ACTGGG	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 190
Bse1I	ACTGG	2 cut(s)	55, 344
Bse3DI	GCAATG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	70, 190
BseMI	GCAATG	1 cut(s)	268
BseNI	ACTGG	2 cut(s)	55, 344
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	118, 183
BshNI	GGYRCC	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	70, 190
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	118, 183
Bsp143I	GATC	4 cut(s)	169, 193, 232, 291
BspACI	CCGC	4 cut(s)	236, 299, 383, 386
BspANI	GGCC	2 cut(s)	118, 183
BspLI	GGNNCC	3 cut(s)	28, 119, 148
BspPI	GGATC	2 cut(s)	201, 227
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	55, 344
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	4 cut(s)	169, 193, 232, 291
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	4 cut(s)	172, 196, 235, 294
BstMBI	GATC	4 cut(s)	169, 193, 232, 291
BstV1I	GCAGC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	118, 183
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	48, 280
Cfr13I	GGNCC	3 cut(s)	53, 117, 147
Csp6I	GTAC	2 cut(s)	109, 135
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	4 cut(s)	67, 118, 183, 364
CviKI_1	RGCY	4 cut(s)	67, 118, 183, 364
CviQI	GTAC	2 cut(s)	109, 135
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	4 cut(s)	171, 195, 234, 293
DpnII	GATC	4 cut(s)	169, 193, 232, 291
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	53, 147
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	145
FaiI	YATR	3 cut(s)	70, 143, 378
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	381, 384
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	381, 384
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	381, 384
HaeIII	GGCC	2 cut(s)	118, 183
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	145
HincII	GTYRAC	2 cut(s)	6, 176
HindII	GTYRAC	2 cut(s)	6, 176
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	3 cut(s)	6, 135, 176
Hpy188I	TCNGA	4 cut(s)	61, 169, 208, 316
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	3 cut(s)	6, 135, 176
Hpy99I	CGWCG	3 cut(s)	10, 257, 260
HpyAV	CCTTC	3 cut(s)	66, 338, 365
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	178, 255
HpyCH4V	TGCA	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	178, 255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	169, 193, 232, 291
LpnPI	CCDG	5 cut(s)	36, 77, 182, 325, 350
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	178, 255
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	4 cut(s)	171, 195, 234, 293
MboI	GATC	4 cut(s)	169, 193, 232, 291
MboII	GAAGA	4 cut(s)	93, 236, 344, 367
MluCI	AATT	4 cut(s)	201, 211, 228, 319
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	184, 298
MslI	CAYNNNNRTG	1 cut(s)	273
NdeII	GATC	4 cut(s)	169, 193, 232, 291
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	3 cut(s)	28, 119, 148
NmeAIII	GCCGAG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	382, 385
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	28, 119, 148
PspPI	GGNCC	3 cut(s)	53, 117, 147
RsaI	GTAC	2 cut(s)	110, 136
RsaNI	GTAC	2 cut(s)	109, 135
RseI	CAYNNNNRTG	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	381, 384
Sau3AI	GATC	4 cut(s)	169, 193, 232, 291
Sau96I	GGNCC	3 cut(s)	53, 117, 147
SchI	GAGTC	1 cut(s)	158
SetI	ASST	7 cut(s)	58, 69, 181, 258, 309, 366, 376
SinI	GGWCC	2 cut(s)	53, 147
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	4 cut(s)	201, 211, 228, 319
SsiI	CCGC	4 cut(s)	236, 299, 383, 386
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	181, 258
TaqI	TCGA	2 cut(s)	5, 294
TasI	AATT	4 cut(s)	201, 211, 228, 319
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	386
TscAI	CASTG	2 cut(s)	55, 280
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	345, 384
TspRI	CASTG	2 cut(s)	55, 280
VpaK11BI	GGWCC	2 cut(s)	53, 147
XapI	RAATTY	2 cut(s)	201, 211
XmaJI	CCTAGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.