Rh3BG334700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006917
Physical Location & Seq
Forward (+)
35444526 .. 35444687
162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG334700.1

Sequence Viewer

Length: 162 bp
ATGAAAGAGGTTGATCGATTCGAAGGTAAACCGGTTCTTCCGGTCGAGGAAGTCGTCGAATCGGTTCAGCATAGTCAAGGAGGAGAAGAGTCGGCGGCAGTTGAAATTGCAAAGAAATCTGACGACAGTGAGAAGGTATCGGTTGAGAAAGCGAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.77

Weight (kDa)

4.53

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 1 cut(s) 104
AsiGI ACCGGT 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 63
AsuII TTCGAA 1 cut(s) 21
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 16
BsaWI WCCGGW 2 cut(s) 31, 40
Bse118I RCCGGY 1 cut(s) 31
BseCI ATCGAT 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 32, 41
Bsp119I TTCGAA 1 cut(s) 21
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssMI GATC 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 21
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMCI CGRYCG 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 16
BsuTUI ATCGAT 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 16
CspAI ACCGGT 1 cut(s) 31
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
FaiI YATR 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HapII CCGG 2 cut(s) 32, 41
HinfI GANTC 3 cut(s) 18, 59, 89
HpaII CCGG 2 cut(s) 32, 41
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 17, 127
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 110
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 2 cut(s) 45, 54
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 29, 98
MluCI AATT 1 cut(s) 105
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 2 cut(s) 40, 74
MroXI GAANNNNTTC 1 cut(s) 63
MspI CCGG 2 cut(s) 32, 41
NdeII GATC 1 cut(s) 13
NspV TTCGAA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 18, 59
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 1 cut(s) 98
SetI ASST 3 cut(s) 12, 28, 138
SfuI TTCGAA 1 cut(s) 21
SgeI CNNG 4 cut(s) 44, 53, 58, 89
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 95
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 4 cut(s) 16, 21, 45, 57
TasI AATT 1 cut(s) 105
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 18, 59
TscAI CASTG 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.