Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Forward (+)

4950157 .. 4950879

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1072600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGCTCGTCCAGGACCTGTTTCTGACGGCGTCGCTGGCTCTGATCCTCTCGTTCCTCGTCGCCAAGCTCGTCGCCATGGCGGTTGCTGGCCGGGAATCGGAGCCGGAATTCGGGGATGGCGGCGGTGAAGGAGTTGGTGCGGAGGAGGTCAGCTTCGAAGAGAGGAGGCTGAAAGTGGAAGGGGCTTTTCGCAGTCAGAGGAGCGTGGAGTTTGTCGGACAAGTGAATGTCCTTCGATTCGAAGGGGAAACGGTTCATCGGGCTGAGGAGATTGCAGAGCCACTGCAGGATCGTCGAGAAGGCCGCGGATTGCCGGAGGAGGTGTTGGAGGAAGAGTCGGTGGAGGTTAGATTGCCGGAGAAGTCGTCAGCGGCGGTTGGATTGCCGGAGAAGTCGTCAGCGGCGGTTGGATTGCCGGAGAAGTCGTCGGATGGCGGGGACAAGCTTTCGGTGGAGAAAGCGATGGAGTTTGATCGCGGAAGCTCGGATAACAGCGAAGTGGAAGAAATTGGCGCGAAATCAGCAGGAAACGAAGTCGTTGCCGAACAATCGGAGGAGGTTAGGGTTGCGGATTCCGATGAAGCTAAGGAGAAGGCACACGTGGCGGCCAGTGAGTTTAAATCGGGAAATTTCAGTGACGAGGATGATTGGGAAGGGATTGAGAAGAGTGAGCTGGATGATGAATATGCTGCGGCGGTGAGATCTGAGGGACACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

241

Amino Acids

25.91

Weight (kDa)

4.35

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	309, 480, 518
AclWI	GGATC	2 cut(s)	40, 300
AcoI	YGGCCR	2 cut(s)	91, 609
AcsI	RAATTY	2 cut(s)	110, 631
AcvI	CACGTG	1 cut(s)	604
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	100, 113
AflIII	ACRYGT	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	7 cut(s)	7, 70, 156, 448, 486, 587, 676
AluI	AGCT	7 cut(s)	7, 70, 156, 448, 486, 587, 676
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	40, 300
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	3 cut(s)	91, 304, 609
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	2 cut(s)	110, 631
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	140, 712
AsuII	TTCGAA	2 cut(s)	159, 243
AvaII	GGWCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	9
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	3 cut(s)	113, 428, 460
BceAI	ACGGC	1 cut(s)	45
BcgI	CGANNNNNNTGC	4 cut(s)	278, 312, 524, 558
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	287
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	7 cut(s)	124, 307, 375, 405, 609, 693, 696
BlsI	GCNGC	7 cut(s)	125, 308, 376, 406, 610, 694, 697
Bme1390I	CCNGG	2 cut(s)	14, 95
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	14, 95
Bpu10I	CCTNAGC	2 cut(s)	267, 588
Bpu14I	TTCGAA	2 cut(s)	159, 243
BpuMI	CCSGG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	604
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	78, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 113
Bse1I	ACTGG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	78, 307
BseGI	GGATG	4 cut(s)	124, 439, 652, 685
BseLI	CCNNNNNNNGG	2 cut(s)	100, 113
BseMII	CTCAG	2 cut(s)	258, 699
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	6 cut(s)	161, 181, 217, 284, 335, 572
BseXI	GCAGC	1 cut(s)	679
Bsh1236I	CGCG	3 cut(s)	309, 480, 518
BshFI	GGCC	3 cut(s)	93, 306, 611
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	6 cut(s)	94, 107, 317, 359, 389, 419
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	100, 113
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	93, 306, 611
Bsp119I	TTCGAA	2 cut(s)	159, 243
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	4 cut(s)	45, 292, 475, 704
Bsp19I	CCATGG	1 cut(s)	78
BspANI	GGCC	3 cut(s)	93, 306, 611
BspCNI	CTCAG	2 cut(s)	259, 700
BspFNI	CGCG	3 cut(s)	309, 480, 518
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	291
BspPI	GGATC	2 cut(s)	40, 300
BspT104I	TTCGAA	2 cut(s)	159, 243
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	78, 307
BssMI	GATC	4 cut(s)	45, 292, 475, 704
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	3 cut(s)	156, 330, 662
BstACI	GRCGYC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	604
BstBI	TTCGAA	2 cut(s)	159, 243
BstC8I	GCNNGC	2 cut(s)	39, 91
BstDEI	CTNAG	3 cut(s)	267, 588, 708
BstDSI	CCRYGG	2 cut(s)	78, 307
BstF5I	GGATG	4 cut(s)	124, 439, 652, 685
BstFNI	CGCG	3 cut(s)	309, 480, 518
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	4 cut(s)	48, 295, 478, 707
BstMBI	GATC	4 cut(s)	45, 292, 475, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 524, 605
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	12, 93
BstSFI	CTRYAG	1 cut(s)	287
BstUI	CGCG	3 cut(s)	309, 480, 518
BstV1I	GCAGC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	3 cut(s)	93, 306, 611
BtgI	CCRYGG	2 cut(s)	78, 307
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	4 cut(s)	124, 439, 652, 685
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	3 cut(s)	284, 619, 643
Cac8I	GCNNGC	2 cut(s)	39, 91
CaiI	CAGNNNCTG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	16
Cfr42I	CCGCGG	1 cut(s)	310
CseI	GACGC	1 cut(s)	21
CviAII	CATG	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	267, 588, 708
DpnI	GATC	4 cut(s)	47, 294, 477, 706
DpnII	GATC	4 cut(s)	45, 292, 475, 704
DraI	TTTAAA	1 cut(s)	622
EaeI	YGGCCR	2 cut(s)	91, 609
Eam1104I	CTCTTC	3 cut(s)	156, 330, 662
EarI	CTCTTC	3 cut(s)	156, 330, 662
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	7
Eco72I	CACGTG	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 690
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	1 cut(s)	78
FauI	CCCGC	1 cut(s)	431
Fnu4HI	GCNGC	7 cut(s)	124, 307, 375, 405, 609, 693, 696
FokI	GGATG	4 cut(s)	131, 446, 659, 692
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	7 cut(s)	124, 307, 375, 405, 609, 693, 696
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	7 cut(s)	124, 307, 375, 405, 609, 693, 696
HaeIII	GGCC	3 cut(s)	93, 306, 611
HapII	CCGG	6 cut(s)	94, 107, 317, 359, 389, 419
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	518
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	98, 240, 338, 575
HpaII	CCGG	6 cut(s)	94, 107, 317, 359, 389, 419
HphI	GGTGA	2 cut(s)	140, 712
Hpy188III	TCNNGA	2 cut(s)	299, 627
Hpy99I	CGWCG	5 cut(s)	37, 65, 77, 300, 433
HpyAV	CCTTC	7 cut(s)	125, 176, 239, 245, 296, 589, 650
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	2 cut(s)	278, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 524, 605
HpyF3I	CTNAG	3 cut(s)	267, 588, 708
HpySE526I	ACGT	1 cut(s)	603
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	516
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	45, 292, 475, 704
LmnI	GCTCC	3 cut(s)	4, 103, 204
Lsp1109I	GCAGC	1 cut(s)	679
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	4 cut(s)	47, 294, 477, 706
MboI	GATC	4 cut(s)	45, 292, 475, 704
MboII	GAAGA	4 cut(s)	173, 347, 518, 679
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	110, 510, 631
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	5 cut(s)	199, 309, 361, 391, 411
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	621
MspA1I	CMGCKG	3 cut(s)	309, 374, 404
MspI	CCGG	6 cut(s)	94, 107, 317, 359, 389, 419
MspR9I	CCNGG	2 cut(s)	14, 95
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	3 cut(s)	309, 480, 518
MwoI	GCNNNNNNNGC	3 cut(s)	38, 524, 605
NciI	CCSGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	4 cut(s)	45, 292, 475, 704
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	638
NspV	TTCGAA	2 cut(s)	159, 243
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	98, 240, 575
PflFI	GACNNNGTC	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	7 cut(s)	125, 308, 376, 406, 610, 694, 697
PleI	GAGTC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	604
PmlI	CACGTG	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	604
PpuMI	RGGWCCY	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	704
PsyI	GACNNNGTC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	9
SacII	CCGCGG	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	7 cut(s)	124, 307, 375, 405, 609, 693, 696
Sau3AI	GATC	4 cut(s)	45, 292, 475, 704
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	14, 95
SduI	GDGCHC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	287
Sfr303I	CCGCGG	1 cut(s)	310
SfuI	TTCGAA	2 cut(s)	159, 243
SgrBI	CCGCGG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	3 cut(s)	110, 510, 631
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	12, 93
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	4 cut(s)	159, 238, 243, 298
TasI	AATT	3 cut(s)	110, 510, 631
TauI	GCSGC	6 cut(s)	126, 309, 377, 407, 611, 698
TfiI	GAWTC	3 cut(s)	98, 240, 575
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	3 cut(s)	291, 619, 643
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	3 cut(s)	248, 597, 699
TspRI	CASTG	3 cut(s)	291, 619, 643
Tth111I	GACNNNGTC	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	110, 631
XmnI	GAANNNNTTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.