Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Forward (+)

38810438 .. 38812130

Gene Structure 1693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTAAATCCCTTAAAGATTCCTATTTTGTTCTCGGTGGCAAGTTCTATGGCACAACTGCTGGCCAGGCTAGCTGGCAACTACGGTGCAACTGCTGCTCATTTAGATACTAGGCAACACGCTGCCATTAATGCAACTGCAACGATGACAACCCCGACAGAGGTTGGTGGAATTAATATTTCACTGGCTAAGAAGGGTCAGTTGGGGAGGTCGCGGGCAGCAGGAATTAGCAGCCAGAAGAGGGTTGAATTCGCCGGAGAAATGAAAGAGATTGATCGATTTGAAGGTAAACCGGTTCTTTTGGTCGAGGAAGTCGTCGAATCGGTTCAGCATAGTCAAGGAGGAGAAGAGTCGACGGAAGTTGAAATTGCAAAGAAATCCGACGACGGCGAGAAGGTATCGGTTGAGAAAGCGAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.86

Weight (kDa)

5.66

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	353
AccII	CGCG	1 cut(s)	214
AciI	CCGC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	160, 241
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	248, 284, 365
AjnI	CCWGG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	4 cut(s)	95, 122, 218, 231
ApoI	RAATTY	1 cut(s)	248
AseI	ATTAAT	2 cut(s)	129, 174
AsiGI	ACCGGT	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	82, 109, 230, 243
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	67
BfaI	CTAG	2 cut(s)	71, 111
BisI	GCNGC	4 cut(s)	96, 123, 219, 232
BlsI	GCNGC	4 cut(s)	97, 124, 220, 233
Bme1390I	CCNGG	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	67
BmtI	GCTAGC	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 241
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	67
BseCI	ATCGAT	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	160, 241
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	4 cut(s)	82, 109, 230, 243
Bsh1236I	CGCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	65
BshTI	ACCGGT	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	255, 293
BslI	CCNNNNNNNGG	2 cut(s)	160, 241
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	65
BspDI	ATCGAT	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	292
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	2 cut(s)	233, 342
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	63, 72, 76, 216
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 71, 95, 131
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	4 cut(s)	82, 109, 230, 243
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	4 cut(s)	63, 72, 76, 216
Cfr10I	RCCGGY	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	292
CviJI	RGCY	5 cut(s)	65, 70, 74, 188, 234
CviKI_1	RGCY	5 cut(s)	65, 70, 74, 188, 234
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	233, 342
EarI	CTCTTC	2 cut(s)	233, 342
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	65
FaiI	YATR	2 cut(s)	50, 333
FauI	CCCGC	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	4 cut(s)	96, 123, 219, 232
Fsp4HI	GCNGC	4 cut(s)	96, 123, 219, 232
FspBI	CTAG	2 cut(s)	71, 111
GluI	GCNGC	4 cut(s)	96, 123, 219, 232
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	255, 293
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	3 cut(s)	19, 320, 350
HpaII	CCGG	2 cut(s)	255, 293
Hpy166II	GTNNAC	2 cut(s)	290, 354
Hpy188I	TCNGA	1 cut(s)	382
Hpy8I	GTNNAC	2 cut(s)	290, 354
Hpy99I	CGWCG	4 cut(s)	320, 358, 386, 389
HpyAV	CCTTC	3 cut(s)	187, 278, 388
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	4 cut(s)	89, 134, 140, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 71, 95, 131
HpyF3I	CTNAG	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	47, 52, 60, 79, 170, 207, 248, 268, 306
Lsp1109I	GCAGC	4 cut(s)	82, 109, 230, 243
MaeI	CTAG	2 cut(s)	71, 111
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	2 cut(s)	250, 359
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	4 cut(s)	171, 225, 248, 366
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	154, 201, 234, 301, 335
Mox20I	TGGCCA	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	3 cut(s)	14, 129, 174
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	255, 293
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	4 cut(s)	67, 71, 95, 131
NdeII	GATC	1 cut(s)	274
NheI	GCTAGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	19, 320
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	97, 124, 220, 233
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PshBI	ATTAAT	2 cut(s)	129, 174
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	14, 129, 174
SatI	GCNGC	4 cut(s)	96, 123, 219, 232
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	5 cut(s)	76, 165, 212, 289, 399
Sse9I	AATT	4 cut(s)	171, 225, 248, 366
SsiI	CCGC	1 cut(s)	214
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	71, 111
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	4 cut(s)	277, 306, 318, 353
TasI	AATT	4 cut(s)	171, 225, 248, 366
TfiI	GAWTC	2 cut(s)	19, 320
Tru1I	TTAA	3 cut(s)	14, 129, 174
Tru9I	TTAA	3 cut(s)	14, 129, 174
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	4 cut(s)	95, 122, 218, 231
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	189
VspI	ATTAAT	2 cut(s)	129, 174
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	71, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.