Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Reverse (-)

66282897 .. 66283376

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG498100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGGAGGTGATATTCGAAGAGAGGCTGAGAGTCGAAGAGGTTTATCAGAGCCAGAGGAGGGTTGAATTCGCCGCAGAAGTGAAGGAGGTTGATCGATTCGAAAGTAAACCGGTTCGTCCGGTCGAGGAAGTCGTCGAATCGGTTCAGCACAGTCAAGGAGGAGAAGAGTCAGCGGCCGTTGAAATTGCAAAGAAATCCGACGACGGCGAGAAGGTGTCGGTTGAGAAAGCGAATGACTCTGATCGTCAACGTGGCCGTGATGAGGAGGATCAGGAAATTTCGGAGAATATACTACGGGAAGAAATTGGTCCGCAATCAGCACCAAACGACGTCGTTACAGCACATTGCAGTGAAGCAAAGGGAAAGATCGAAGCGGTTGAGGTGAAATCGGAAAATTACTACAGCGATGAAGATGACTGGGAAGGGATTGAGAAGAGTGAGCTGGATGAGGGTTATACTGCGGCGGTGAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.0

Weight (kDa)

4.37

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
AciI	CCGC	6 cut(s)	75, 176, 314, 377, 464, 467
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	2 cut(s)	177, 256
AcsI	RAATTY	2 cut(s)	68, 279
AcyI	GRCGYC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	61, 265
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	68, 185
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	177, 256
ApoI	RAATTY	2 cut(s)	68, 279
AsiGI	ACCGGT	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	22, 397
AsuII	TTCGAA	2 cut(s)	18, 102
AvaII	GGWCC	1 cut(s)	311
BceAI	ACGGC	3 cut(s)	164, 223, 243
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	3 cut(s)	75, 177, 465
BlsI	GCNGC	3 cut(s)	76, 178, 466
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	430
Bpu14I	TTCGAA	2 cut(s)	18, 102
Bsa29I	ATCGAT	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	333
BsaWI	WCCGGW	2 cut(s)	112, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 265
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	97
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	61, 265
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	4 cut(s)	20, 73, 177, 281
BseX3I	CGGCCG	1 cut(s)	177
Bsh1285I	CGRYCG	2 cut(s)	126, 180
BshFI	GGCC	2 cut(s)	179, 258
BshTI	ACCGGT	1 cut(s)	112
BshVI	ATCGAT	1 cut(s)	97
BsiEI	CGRYCG	2 cut(s)	126, 180
BsiSI	CCGG	2 cut(s)	113, 122
BslI	CCNNNNNNNGG	2 cut(s)	61, 265
BsnI	GGCC	2 cut(s)	179, 258
Bsp119I	TTCGAA	2 cut(s)	18, 102
Bsp143I	GATC	4 cut(s)	94, 244, 271, 369
BspACI	CCGC	6 cut(s)	75, 176, 314, 377, 464, 467
BspANI	GGCC	2 cut(s)	179, 258
BspCNI	CTCAG	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	97
BspPI	GGATC	1 cut(s)	279
BspT104I	TTCGAA	2 cut(s)	18, 102
BsrDI	GCAATG	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	112
BssMI	GATC	4 cut(s)	94, 244, 271, 369
BssNI	GRCGYC	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	4 cut(s)	15, 33, 162, 431
BstACI	GRCGYC	1 cut(s)	333
BstBI	TTCGAA	2 cut(s)	18, 102
BstDEI	CTNAG	2 cut(s)	29, 477
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	4 cut(s)	97, 247, 274, 372
BstMBI	GATC	4 cut(s)	94, 244, 271, 369
BstMCI	CGRYCG	2 cut(s)	126, 180
BstSFI	CTRYAG	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	179, 258
BsuTUI	ATCGAT	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	97
CspAI	ACCGGT	1 cut(s)	112
CviJI	RGCY	5 cut(s)	28, 54, 179, 258, 445
CviKI_1	RGCY	5 cut(s)	28, 54, 179, 258, 445
DdeI	CTNAG	2 cut(s)	29, 477
DpnI	GATC	4 cut(s)	96, 246, 273, 371
DpnII	GATC	4 cut(s)	94, 244, 271, 369
EaeI	YGGCCR	2 cut(s)	177, 256
EagI	CGGCCG	1 cut(s)	177
Eam1104I	CTCTTC	4 cut(s)	15, 33, 162, 431
EarI	CTCTTC	4 cut(s)	15, 33, 162, 431
EclXI	CGGCCG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	177
EcoRI	GAATTC	1 cut(s)	68
FaiI	YATR	2 cut(s)	293, 459
Fnu4HI	GCNGC	3 cut(s)	75, 177, 465
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	3 cut(s)	75, 177, 465
GluI	GCNGC	3 cut(s)	75, 177, 465
HaeIII	GGCC	2 cut(s)	179, 258
HapII	CCGG	2 cut(s)	113, 122
Hin1I	GRCGYC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HinfI	GANTC	5 cut(s)	33, 99, 140, 170, 239
HpaII	CCGG	2 cut(s)	113, 122
HphI	GGTGA	2 cut(s)	22, 397
Hpy166II	GTNNAC	2 cut(s)	110, 251
Hpy188I	TCNGA	5 cut(s)	51, 202, 244, 286, 394
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	110, 251
Hpy99I	CGWCG	5 cut(s)	140, 206, 209, 335, 338
HpyAV	CCTTC	3 cut(s)	79, 208, 419
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	2 cut(s)	253, 333
HpyCH4V	TGCA	2 cut(s)	191, 351
HpyF3I	CTNAG	2 cut(s)	29, 477
HpySE526I	ACGT	2 cut(s)	253, 333
Hsp92I	GRCGYC	1 cut(s)	333
Kzo9I	GATC	4 cut(s)	94, 244, 271, 369
LpnPI	CCDG	6 cut(s)	68, 126, 135, 260, 406, 431
MaeII	ACGT	2 cut(s)	253, 333
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	96, 246, 273, 371
MboI	GATC	4 cut(s)	94, 244, 271, 369
MboII	GAAGA	6 cut(s)	32, 50, 179, 314, 425, 448
MluCI	AATT	5 cut(s)	68, 186, 279, 306, 397
MlyI	GAGTC	3 cut(s)	42, 179, 233
MmeI	TCCRAC	1 cut(s)	225
MroXI	GAANNNNTTC	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	113, 122
NdeII	GATC	4 cut(s)	94, 244, 271, 369
NspV	TTCGAA	2 cut(s)	18, 102
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	99, 140
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	76, 178, 466
PleI	GAGTC	3 cut(s)	41, 178, 233
PpsI	GAGTC	3 cut(s)	41, 178, 233
PspPI	GGNCC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	351
SatI	GCNGC	3 cut(s)	75, 177, 465
Sau3AI	GATC	4 cut(s)	94, 244, 271, 369
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	3 cut(s)	42, 179, 233
SetI	ASST	8 cut(s)	12, 45, 93, 219, 256, 336, 387, 447
SfcI	CTRYAG	1 cut(s)	403
SfuI	TTCGAA	2 cut(s)	18, 102
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	5 cut(s)	68, 186, 279, 306, 397
SsiI	CCGC	6 cut(s)	75, 176, 314, 377, 464, 467
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	2 cut(s)	256, 336
TaqI	TCGA	7 cut(s)	18, 36, 97, 102, 126, 138, 372
TasI	AATT	5 cut(s)	68, 186, 279, 306, 397
TauI	GCSGC	3 cut(s)	77, 179, 467
TfiI	GAWTC	2 cut(s)	99, 140
TscAI	CASTG	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	68, 279
XmnI	GAANNNNTTC	1 cut(s)	144
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.