Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Reverse (-)

64708143 .. 64712413

Gene Structure 4271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG484700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGCTCGTTCAGGACTTGGTTTGGACCGCCTCGGTGGCCCTGATCCTCTCTTTCTTCGTCGCCAAGCTCGTCGCGATCGCCATGGCGGACCGCGAACCGGAATCGGAGTTCGAAGTCAGTGAGAGTGTCGGCGATGGAGTCGTCGTTATGGAGGAGGTGATATTCGAAGAGAGGCTGAGAGTCGAAGAGGTTTATCAGAGCCAGAGGAGGGTTGAATTCGCCGCAGAAGTGAAGGAGGTTGATCGATTCGAAAGTAAACCGGTTCGTCCGGTCGAGGAAGTCGTCGAATCGGTTCAGCACAGTCAAGGAGGAGAAGAGTTAGCGGCCGTTGAAATTGCAAAGAAATCCGACGACGGCGAGAAGGTGTCGGTTGAGAAAGCGAATGACTCTGATCCTTGTCAACGTGGCCGTGATGAGGAGGATCAGGAAATTTCGGAGAATATACTACGGGAAGAAATTGGTCCGCAATCAGCACCAAACGACGTCGTTACAGCACATTGCAGTGAAGCAAAGGGAAAGATCGAAGCGGTTGAGGTGAAATCGGAAAATTACTACAGCGATGAAGATGACTGGGAAGGGATTGAGAAGAGTGAGCTGGATGAGGGTTATACTGCGGCGGTGAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

210

Amino Acids

23.45

Weight (kDa)

4.24

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	489
AccII	CGCG	2 cut(s)	77, 96
AciI	CCGC	9 cut(s)	30, 89, 94, 225, 326, 467, 530, 617, 620
AclWI	GGATC	3 cut(s)	40, 389, 432
AcoI	YGGCCR	2 cut(s)	327, 409
AcsI	RAATTY	2 cut(s)	218, 432
AcyI	GRCGYC	1 cut(s)	486
AfiI	CCNNNNNNNGG	3 cut(s)	100, 211, 418
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	218, 335
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	7, 70, 598
AluI	AGCT	3 cut(s)	7, 70, 598
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	40, 389, 432
AoxI	GGCC	3 cut(s)	39, 327, 409
ApoI	RAATTY	2 cut(s)	218, 432
AsiGI	ACCGGT	1 cut(s)	262
AsiSI	GCGATCGC	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	4 cut(s)	27, 40, 91, 464
AsuHPI	GGTGA	2 cut(s)	172, 550
AsuII	TTCGAA	3 cut(s)	114, 168, 252
AvaII	GGWCC	3 cut(s)	27, 91, 464
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	3 cut(s)	314, 373, 396
BfmI	CTRYAG	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	3 cut(s)	225, 327, 618
BlsI	GCNGC	3 cut(s)	226, 328, 619
Bme18I	GGWCC	3 cut(s)	27, 91, 464
BmgT120I	GGNCC	4 cut(s)	27, 40, 91, 464
BmrI	ACTGGG	1 cut(s)	583
BmuI	ACTGGG	1 cut(s)	583
Bpu14I	TTCGAA	3 cut(s)	114, 168, 252
Bsa29I	ATCGAT	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	33, 84
BsaWI	WCCGGW	3 cut(s)	100, 262, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 211, 418
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	1 cut(s)	499
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	33, 84
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	3 cut(s)	100, 211, 418
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	578
BseRI	GAGGAG	4 cut(s)	170, 223, 327, 434
BseX3I	CGGCCG	1 cut(s)	327
Bsh1236I	CGCG	2 cut(s)	77, 96
Bsh1285I	CGRYCG	3 cut(s)	81, 276, 330
BshFI	GGCC	3 cut(s)	41, 329, 411
BshTI	ACCGGT	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	247
BsiEI	CGRYCG	3 cut(s)	81, 276, 330
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	101, 263, 272
BslI	CCNNNNNNNGG	3 cut(s)	100, 211, 418
BsnI	GGCC	3 cut(s)	41, 329, 411
Bsp119I	TTCGAA	3 cut(s)	114, 168, 252
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
Bsp19I	CCATGG	1 cut(s)	84
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	9 cut(s)	30, 89, 94, 225, 326, 467, 530, 617, 620
BspANI	GGCC	3 cut(s)	41, 329, 411
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	247
BspFNI	CGCG	2 cut(s)	77, 96
BspPI	GGATC	3 cut(s)	40, 389, 432
BspT104I	TTCGAA	3 cut(s)	114, 168, 252
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	578
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	33, 84
BssMI	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
BssNI	GRCGYC	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	4 cut(s)	165, 183, 312, 584
BstACI	GRCGYC	1 cut(s)	486
BstBI	TTCGAA	3 cut(s)	114, 168, 252
BstDEI	CTNAG	2 cut(s)	179, 630
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	2 cut(s)	77, 96
BstKTI	GATC	6 cut(s)	48, 81, 247, 397, 427, 525
BstMBI	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
BstMCI	CGRYCG	3 cut(s)	81, 276, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	556
BstUI	CGCG	2 cut(s)	77, 96
BstZI	CGGCCG	1 cut(s)	327
Bsu15I	ATCGAT	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	41, 329, 411
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	2 cut(s)	150, 576
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	127, 511
BtuMI	TCGCGA	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	4 cut(s)	27, 40, 91, 464
ClaI	ATCGAT	1 cut(s)	247
CpoI	CGGWCCG	1 cut(s)	91
CspAI	ACCGGT	1 cut(s)	262
CspI	CGGWCCG	1 cut(s)	91
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	8 cut(s)	7, 41, 70, 178, 204, 329, 411, 598
CviKI_1	RGCY	8 cut(s)	7, 41, 70, 178, 204, 329, 411, 598
DdeI	CTNAG	2 cut(s)	179, 630
DpnI	GATC	6 cut(s)	47, 80, 246, 396, 426, 524
DpnII	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
EaeI	YGGCCR	2 cut(s)	327, 409
EagI	CGGCCG	1 cut(s)	327
Eam1104I	CTCTTC	4 cut(s)	165, 183, 312, 584
EarI	CTCTTC	4 cut(s)	165, 183, 312, 584
EciI	GGCGGA	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	27, 91, 464
Eco52I	CGGCCG	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	86, 152, 446, 612
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	225, 327, 618
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	225, 327, 618
GluI	GCNGC	3 cut(s)	225, 327, 618
HaeIII	GGCC	3 cut(s)	41, 329, 411
HapII	CCGG	3 cut(s)	101, 263, 272
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HinfI	GANTC	6 cut(s)	104, 141, 183, 249, 290, 389
HpaII	CCGG	3 cut(s)	101, 263, 272
HphI	GGTGA	2 cut(s)	172, 550
Hpy166II	GTNNAC	2 cut(s)	260, 404
Hpy188I	TCNGA	6 cut(s)	109, 201, 352, 394, 439, 547
Hpy188III	TCNNGA	3 cut(s)	14, 76, 428
Hpy8I	GTNNAC	2 cut(s)	260, 404
Hpy99I	CGWCG	8 cut(s)	65, 77, 149, 290, 356, 359, 488, 491
HpyAV	CCTTC	3 cut(s)	229, 358, 572
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	406, 486
HpyCH4V	TGCA	2 cut(s)	341, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	179, 630
HpySE526I	ACGT	2 cut(s)	406, 486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	56, 114, 218, 276, 285, 413, 559, 584
MaeII	ACGT	2 cut(s)	406, 486
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	6 cut(s)	47, 80, 246, 396, 426, 524
MboI	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
MboII	GAAGA	7 cut(s)	49, 182, 200, 329, 467, 578, 601
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	5 cut(s)	218, 336, 432, 459, 550
MlyI	GAGTC	3 cut(s)	150, 192, 383
MmeI	TCCRAC	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	504
MspI	CCGG	3 cut(s)	101, 263, 272
MvnI	CGCG	2 cut(s)	77, 96
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
NlaIII	CATG	1 cut(s)	88
NruI	TCGCGA	1 cut(s)	77
NspV	TTCGAA	3 cut(s)	114, 168, 252
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 282
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	104, 249, 290
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	226, 328, 619
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	3 cut(s)	149, 191, 383
PpsI	GAGTC	3 cut(s)	149, 191, 383
Psp124BI	GAGCTC	1 cut(s)	9
PspPI	GGNCC	4 cut(s)	27, 40, 91, 464
PvuI	CGATCG	1 cut(s)	81
RgaI	GCGATCGC	1 cut(s)	81
RruI	TCGCGA	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	504
Rsr2I	CGGWCCG	1 cut(s)	91
RsrII	CGGWCCG	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	9
SatI	GCNGC	3 cut(s)	225, 327, 618
Sau3AI	GATC	6 cut(s)	45, 78, 244, 394, 424, 522
Sau96I	GGNCC	4 cut(s)	27, 40, 91, 464
SchI	GAGTC	3 cut(s)	150, 192, 383
SduI	GDGCHC	1 cut(s)	9
SfaAI	GCGATCGC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	556
SfuI	TTCGAA	3 cut(s)	114, 168, 252
SgfI	GCGATCGC	1 cut(s)	81
SinI	GGWCC	3 cut(s)	27, 91, 464
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	5 cut(s)	218, 336, 432, 459, 550
SsiI	CCGC	9 cut(s)	30, 89, 94, 225, 326, 467, 530, 617, 620
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	2 cut(s)	409, 489
TaqI	TCGA	8 cut(s)	114, 168, 186, 247, 252, 276, 288, 525
TasI	AATT	5 cut(s)	218, 336, 432, 459, 550
TauI	GCSGC	3 cut(s)	227, 329, 620
TfiI	GAWTC	3 cut(s)	104, 249, 290
TscAI	CASTG	2 cut(s)	127, 511
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	2 cut(s)	127, 511
VpaK11BI	GGWCC	3 cut(s)	27, 91, 464
XapI	RAATTY	2 cut(s)	218, 432
XmnI	GAANNNNTTC	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.