Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006917

Physical Location & Seq

Genomic Coordinates Forward (+)

19821873 .. 19822121

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAACTCGTTCAGGACTTGTTTTGGATAGCGCTGATGGTGCTTATCCTCTGTTTCTTCGTCGCCAAGCTCATCTCTATGGCCATGGCAAACCACGAATGGGAATCATCAGACTTCAAAGTCAGTGTGAGTGTCGGTGACGGAATCGTTATGGAGGAGGTGCAATTCGAAGAGAGGCTGAGAGTCAAAGAGGTTTATCAGAACCAGAGAAGGGTTGAATTCACTAGAGAAGTGAAAGAGGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

82

Amino Acids

9.72

Weight (kDa)

4.71

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33320
malus_domestica	MD08G1087700.v1.1 MD15G1072600.v1.1
prunus_persica	Prupe.1G425200_v2.0.a1
pyrus_communis	pycom08g07150
rosa_chinensis	RchiOBHm_Chr6g0309301
rosa_laevigata	RLG00000010575 RLG00000029443
rosa_multiflora	Rmu_sc0007504.1_g000003 Rmu_sc0007504.1_g000004 Rmu_sc0015692.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159510
rosa_rugosa	Rorug06G0370700
rosa_samantha	Rh1DG111900 Rh3BG311700 Rh3BG334700 Rh4AG060200 Rh5BG475300 Rh5CG498900 Rh6AG131300 Rh6AG484200 Rh6BG493300 Rh6CG498100 Rh6DG484700 Rh7DG430900
rosa_wichuraiana	Rw6G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	218
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	100, 211
AgsI	TTSAA	2 cut(s)	118, 218
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	149
AsuII	TTCGAA	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	83
BccI	CCATC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 211
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	100, 211
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	100, 211
BsnI	GGCC	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	84
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	34
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	70, 83, 178
CviKI_1	RGCY	3 cut(s)	70, 83, 178
DdeI	CTNAG	1 cut(s)	179
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	84
Eco47III	AGCGCT	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	80, 86, 152
FatI	CATG	1 cut(s)	84
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	3 cut(s)	104, 144, 183
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	112, 201
Hpy188III	TCNNGA	1 cut(s)	14
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	32
LpnPI	CCDG	1 cut(s)	218
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	49, 182
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	164, 218
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	6 cut(s)	59, 148, 151, 168, 184, 232
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	84
NlaIII	CATG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	104, 144
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	77
SchI	GAGTC	1 cut(s)	192
SetI	ASST	4 cut(s)	72, 162, 195, 243
SfuI	TTCGAA	1 cut(s)	168
SgeI	CNNG	8 cut(s)	20, 26, 31, 79, 97, 107, 217, 237
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	164, 218
SspMI	CTAG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	84
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	164, 218
TfiI	GAWTC	2 cut(s)	104, 144
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.