FvH4_2g35490

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013356
Physical Location & Seq
Forward (+)
26150267 .. 26151708
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35490.t1

Sequence Viewer

Length: 1266 bp
ATGATGTCTCTAGCAATAGATAATCTCGGTACCCTTTGGATGTGGGGTAATTGCCCACTAGAAAGCAGCAGCAGTGAAGGTGGGTTCTCTCTTGTGAGCAGTTTCACTCCAACCCCGGTGTGGGATTTCCATGGCCACAGAGTTGTGAAGGTGGCATGTGGAAATGAGCATGTAGTAGCCCTAGTGACTGCTGGAGAAACATATAAAGGTGAAGATCTTGTATGCTTCTCTTGGGGTAGTAACAATCATGGTCAGTTAGGCCTCGGGGATAAAGAGAACCGGAATCATCCTGAAATAGTAGATGAATTTAACAAGGACTCCATTTTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACGGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAAAGCATGTGTTGGACATTTGGCCTGGGAGAAAATGGTCAACTTGGGCATGGAACCACCCAAAGTGCATCATCTCCTCAAACTGTGAAAGAATTGCCACAATATGTGTATCTGACCTCTGTTGACTGTGGCTTATTCCACACCTGTGTTGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGAAGAAGGGCCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTGCAGATTTTGTGTAATGGAGCAAACGAGTCTAAATTTCAGGAACCGGTTCAAGTTGCATGTGGTGCTGCCCATACCGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGAAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATTGACTGTTTTTCTCCCACTGTTGTGTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAGCTAAACACTGTTGGGGAGGGAGACAGAACTGCCGAAGAGAATTCTAAAAGAGTCACAGAAACAGAGAAAGGCTTGTCTTCAGCAATGGAAGAAATGAAGCTTCTGCAGTCAAAACTCTCAGTGATGGAACGATATGCCGGCATACTTCATGGTTCGATATTTGGGAAACCCTTGGAAGAGCAGGATATCCCGATCTCCTTGCAGAACTCGGGTACTTACGAGATTGGAAAGGAATGGGACAAAATGTTAGAGTCAGCAGATCGGGTGAAGCTCTTAAGGTTGGAAAAATCCTATCAAAATATGCTTGAAGGTGTTAAAGATAAGCTGATGAAGAGAAGGATTCAGGAGATTGTGAAAGAGTGTCTCAGTTCTTCCACTATAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

422

Amino Acids

46.12

Weight (kDa)

5.2

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 2 - 281 2.2e-45 RCC1-like domain
RCC1_2 PF13540 48 - 85 1.3e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 75 - 124 6.5e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 138 - 185 1.1e-10 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AciI CCGC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 305, 692, 919
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 2 cut(s) 31, 1093
AfiI CCNNNNNNNGG 2 cut(s) 120, 121
AflII CTTAAG 1 cut(s) 1153
AgeI ACCGGT 1 cut(s) 703
AgsI TTSAA 3 cut(s) 710, 868, 1187
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 2 cut(s) 546, 836
AluBI AGCT 5 cut(s) 763, 880, 979, 1150, 1204
AluI AGCT 5 cut(s) 763, 880, 979, 1150, 1204
Alw26I GTCTC 4 cut(s) 12, 389, 894, 1247
Ama87I CYCGRG 2 cut(s) 263, 1087
AoxI GGCC 5 cut(s) 133, 259, 424, 595, 845
ApeKI GCWGC 3 cut(s) 66, 69, 725
ApoI RAATTY 3 cut(s) 305, 692, 919
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AsiGI ACCGGT 1 cut(s) 703
Asp700I GAANNNNTTC 1 cut(s) 705
Asp718I GGTACC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 221, 1156
AvaI CYCGRG 2 cut(s) 263, 1087
BalI TGGCCA 1 cut(s) 135
BanI GGYRCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 948
BbvI GCAGC 3 cut(s) 78, 81, 712
BccI CCATC 2 cut(s) 746, 997
BceAI ACGGC 1 cut(s) 378
BcgI CGANNNNNNTGC 2 cut(s) 1060, 1094
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 4 cut(s) 12, 389, 894, 1247
BfaI CTAG 4 cut(s) 11, 59, 182, 618
BfmI CTRYAG 2 cut(s) 561, 983
BfrI CTTAAG 1 cut(s) 1153
BglII AGATCT 1 cut(s) 214
BisI GCNGC 3 cut(s) 67, 70, 726
BlsI GCNGC 3 cut(s) 68, 71, 727
Bme1390I CCNGG 2 cut(s) 116, 428
BmeT110I CYCGRG 2 cut(s) 263, 1087
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 31, 457, 702
BmrFI CCNGG 2 cut(s) 116, 428
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 4 cut(s) 479, 604, 625, 634
BmuI ACTGGG 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 948
BpmI CTGGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 6 cut(s) 114, 130, 262, 427, 598, 1050
BsaWI WCCGGW 2 cut(s) 279, 703
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 121
Bse118I RCCGGY 2 cut(s) 703, 1016
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 6 cut(s) 114, 130, 262, 427, 598, 1050
BseGI GGATG 4 cut(s) 45, 286, 591, 649
BseLI CCNNNNNNNGG 2 cut(s) 120, 121
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 2 cut(s) 1011, 1258
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 78, 81, 712
BshFI GGCC 5 cut(s) 135, 261, 426, 597, 847
BshNI GGYRCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 703
BsiHKCI CYCGRG 2 cut(s) 263, 1087
BsiSI CCGG 4 cut(s) 116, 280, 704, 1017
BslFI GGGAC 2 cut(s) 643, 1130
BslI CCNNNNNNNGG 2 cut(s) 120, 121
BsmAI GTCTC 4 cut(s) 12, 389, 894, 1247
BsmFI GGGAC 2 cut(s) 643, 1130
BsnI GGCC 5 cut(s) 135, 261, 426, 597, 847
BsoBI CYCGRG 2 cut(s) 263, 1087
Bsp143I GATC 3 cut(s) 214, 1071, 1138
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 1 cut(s) 329
BspANI GGCC 5 cut(s) 135, 261, 426, 597, 847
BspCNI CTCAG 2 cut(s) 1010, 1257
BspLI GGNNCC 3 cut(s) 31, 457, 702
BspMAI CTGCAG 2 cut(s) 565, 987
BspQI GCTCTTC 2 cut(s) 870, 1050
BspT107I GGYRCC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 1153
BsrDI GCAATG 1 cut(s) 969
BsrFI RCCGGY 2 cut(s) 703, 1016
BsrI ACTGG 1 cut(s) 631
BssAI RCCGGY 2 cut(s) 703, 1016
BssECI CCNNGG 6 cut(s) 114, 130, 262, 427, 598, 1050
BssMI GATC 3 cut(s) 214, 1071, 1138
BssT1I CCWWGG 2 cut(s) 130, 1050
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 6 cut(s) 487, 530, 736, 821, 835, 889
Bst6I CTCTTC 5 cut(s) 772, 870, 909, 1050, 1205
BstAFI CTTAAG 1 cut(s) 1153
BstAPI GCANNNNNTGC 2 cut(s) 644, 722
BstC8I GCNNGC 1 cut(s) 1018
BstDEI CTNAG 2 cut(s) 997, 1244
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 4 cut(s) 45, 286, 591, 649
BstKTI GATC 3 cut(s) 217, 1074, 1141
BstMAI GTCTC 4 cut(s) 12, 389, 894, 1247
BstMBI GATC 3 cut(s) 214, 1071, 1138
BstMWI GCNNNNNNNGC 4 cut(s) 350, 644, 722, 877
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 5 cut(s) 159, 173, 348, 412, 720
BstSCI CCNGG 2 cut(s) 114, 426
BstSFI CTRYAG 2 cut(s) 561, 983
BstV1I GCAGC 3 cut(s) 78, 81, 712
BstV2I GAAGAC 1 cut(s) 948
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 5 cut(s) 135, 261, 426, 597, 847
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 4 cut(s) 45, 286, 591, 649
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 4 cut(s) 79, 831, 885, 1005
Cac8I GCNNGC 1 cut(s) 1018
Cfr10I RCCGGY 2 cut(s) 703, 1016
Cfr13I GGNCC 1 cut(s) 595
Csp6I GTAC 2 cut(s) 30, 1092
CspAI ACCGGT 1 cut(s) 703
CviQI GTAC 2 cut(s) 30, 1092
DdeI CTNAG 2 cut(s) 997, 1244
DpnI GATC 3 cut(s) 216, 1073, 1140
DpnII GATC 3 cut(s) 214, 1071, 1138
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 5 cut(s) 772, 870, 909, 1050, 1205
EarI CTCTTC 5 cut(s) 772, 870, 909, 1050, 1205
Eco130I CCWWGG 2 cut(s) 130, 1050
Eco147I AGGCCT 1 cut(s) 261
Eco32I GATATC 1 cut(s) 1066
Eco57I CTGAAG 1 cut(s) 942
Eco88I CYCGRG 2 cut(s) 263, 1087
EcoO109I RGGNCCY 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 919
EcoRII CCWGG 1 cut(s) 426
EcoRV GATATC 1 cut(s) 1066
EcoT14I CCWWGG 2 cut(s) 130, 1050
ErhI CCWWGG 2 cut(s) 130, 1050
FaqI GGGAC 2 cut(s) 643, 1130
Fnu4HI GCNGC 3 cut(s) 67, 70, 726
FokI GGATG 4 cut(s) 52, 273, 598, 656
Fsp4HI GCNGC 3 cut(s) 67, 70, 726
FspBI CTAG 4 cut(s) 11, 59, 182, 618
GluI GCNGC 3 cut(s) 67, 70, 726
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 5 cut(s) 135, 261, 426, 597, 847
HapII CCGG 4 cut(s) 116, 280, 704, 1017
HincII GTYRAC 2 cut(s) 443, 526
HindII GTYRAC 2 cut(s) 443, 526
HindIII AAGCTT 2 cut(s) 761, 977
HinfI GANTC 6 cut(s) 283, 317, 686, 930, 1130, 1219
HpaII CCGG 4 cut(s) 116, 280, 704, 1017
HphI GGTGA 2 cut(s) 221, 1156
Hpy166II GTNNAC 2 cut(s) 443, 526
Hpy188I TCNGA 2 cut(s) 516, 800
Hpy188III TCNNGA 4 cut(s) 290, 698, 1069, 1223
Hpy8I GTNNAC 2 cut(s) 443, 526
HpyAV CCTTC 5 cut(s) 71, 142, 586, 1181, 1209
HpyCH4III ACNGT 6 cut(s) 487, 530, 736, 821, 835, 889
HpyCH4V TGCA 7 cut(s) 470, 563, 638, 661, 716, 985, 1081
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 644, 722, 877
HpyF3I CTNAG 2 cut(s) 997, 1244
KpnI GGTACC 1 cut(s) 33
KroI GCCGGC 1 cut(s) 1016
KroNI GCCGGC 1 cut(s) 1018
Kzo9I GATC 3 cut(s) 214, 1071, 1138
LguI GCTCTTC 2 cut(s) 870, 1050
LmnI GCTCC 1 cut(s) 677
Lsp1109I GCAGC 3 cut(s) 78, 81, 712
LweI GCATC 4 cut(s) 479, 604, 625, 634
MaeI CTAG 4 cut(s) 11, 59, 182, 618
MaeIII GTNAC 3 cut(s) 184, 239, 931
MalI GATC 3 cut(s) 216, 1073, 1140
MboI GATC 3 cut(s) 214, 1071, 1138
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 6 cut(s) 49, 305, 494, 692, 813, 919
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 4 cut(s) 311, 695, 939, 1139
MmeI TCCRAC 3 cut(s) 134, 395, 1140
MnlI CCTC 8 cut(s) 272, 489, 529, 608, 773, 853, 858, 889
Mox20I TGGCCA 1 cut(s) 135
MroNI GCCGGC 1 cut(s) 1016
MroXI GAANNNNTTC 1 cut(s) 705
MscI TGGCCA 1 cut(s) 135
MseI TTAA 3 cut(s) 309, 1154, 1194
MslI CAYNNNNRTG 2 cut(s) 546, 836
Msp20I TGGCCA 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 1153
MspI CCGG 4 cut(s) 116, 280, 704, 1017
MspR9I CCNGG 2 cut(s) 116, 428
MunI CAATTG 1 cut(s) 813
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 350, 644, 722, 877
NaeI GCCGGC 1 cut(s) 1018
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 130
NdeII GATC 3 cut(s) 214, 1071, 1138
NgoMIV GCCGGC 1 cut(s) 1016
NlaIV GGNNCC 3 cut(s) 31, 457, 702
NmuCI GTSAC 2 cut(s) 184, 931
NspI RCATGY 5 cut(s) 159, 173, 348, 412, 720
OliI CACNNNNGTG 2 cut(s) 546, 836
PceI AGGCCT 1 cut(s) 261
PciSI GCTCTTC 2 cut(s) 870, 1050
PdiI GCCGGC 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 2 cut(s) 283, 1219
PinAI ACCGGT 1 cut(s) 703
PkrI GCNGC 3 cut(s) 68, 71, 727
PleI GAGTC 4 cut(s) 311, 694, 938, 1138
PpsI GAGTC 4 cut(s) 311, 694, 938, 1138
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 31, 457, 702
PspPI GGNCC 1 cut(s) 595
PstI CTGCAG 2 cut(s) 565, 987
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 31, 1093
RsaNI GTAC 2 cut(s) 30, 1092
RseI CAYNNNNRTG 2 cut(s) 546, 836
SapI GCTCTTC 2 cut(s) 870, 1050
SaqAI TTAA 3 cut(s) 309, 1154, 1194
SatI GCNGC 3 cut(s) 67, 70, 726
Sau3AI GATC 3 cut(s) 214, 1071, 1138
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 4 cut(s) 311, 695, 939, 1139
ScrFI CCNGG 2 cut(s) 116, 428
SfaNI GCATC 4 cut(s) 479, 604, 625, 634
SfcI CTRYAG 2 cut(s) 561, 983
SmiMI CAYNNNNRTG 2 cut(s) 546, 836
SmlI CTYRAG 1 cut(s) 1153
SmoI CTYRAG 1 cut(s) 1153
Sse9I AATT 6 cut(s) 49, 305, 494, 692, 813, 919
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 1 cut(s) 329
SspMI CTAG 4 cut(s) 11, 59, 182, 618
StuI AGGCCT 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 114, 426
StyI CCWWGG 2 cut(s) 130, 1050
TaaI ACNGT 6 cut(s) 487, 530, 736, 821, 835, 889
TaqI TCGA 1 cut(s) 1034
TaqII GACCGA 1 cut(s) 590
TasI AATT 6 cut(s) 49, 305, 494, 692, 813, 919
TfiI GAWTC 2 cut(s) 283, 1219
Tru1I TTAA 3 cut(s) 309, 1154, 1194
Tru9I TTAA 3 cut(s) 309, 1154, 1194
TscAI CASTG 4 cut(s) 79, 838, 892, 1005
TseFI GTSAC 2 cut(s) 184, 931
TseI GCWGC 3 cut(s) 66, 69, 725
Tsp45I GTSAC 2 cut(s) 184, 931
TspDTI ATGAA 7 cut(s) 318, 351, 546, 602, 989, 1016, 1223
TspRI CASTG 4 cut(s) 79, 838, 892, 1005
Vha464I CTTAAG 1 cut(s) 1153
XapI RAATTY 3 cut(s) 305, 692, 919
XceI RCATGY 5 cut(s) 159, 173, 348, 412, 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 4 cut(s) 11, 59, 182, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.