Rh6DG461900

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013356
Physical Location & Seq
Reverse (-)
63119125 .. 63120375
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG461900.1

Sequence Viewer

Length: 1251 bp
ATGATGTCCCTAGCAATAGATAATCTCGGTACCCTTTGGATGTGGGGCAATTGTCCACTAGAAAGCAGCAGCAGTGAAGGTGGGTTCTCTCTTGTGAGCGGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACACGGTTGTGAAGGTAGCATGCGGAAATGAGCATGTAGTAGCCCTAGTCACGGCTGGAGAAACGTATAAAGTTGAGGATCTTATATGCTTCTCTTGGGGTAGTAACAATCATGGGCAGTTAGGCCTCGGGGATAAAGAGAACCGGAATCGTCCTGAAATAGTAGAAGATTTTAACGAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACAGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAACGCATGTGCTGGATGTTTGGCCTTGGAGAAAATGGGCAACTTGGGCATGGAACCACTCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAATATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTGTTGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTGTGTAACGGATCCAATGGGTCTAAATTTCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAATGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTTCTCCCACTGTTGTGTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATAGTGTTGGGGAAGAGAATTCTAAAGGAGTCACCAAAACAGAAAAAGCCTTGTCTTCAGCAATTGAAGAAACGAAACTTCTTCAATCAAAACTCGCAGTGATGGAACGATATGCTGGCGTACTTCATGGTTCAATATTTGGAAAACCCTTGGAAGAGCAGGATATTCCGATCTCCTTGCAGAACTCAAGTATTCATGACATTGGAAAGGAATGGGACAGAATGCTAGAGTCAGCAGATCCTGCGAAGCTCGTAAGGTTGGAAAAGTTCTATCAAAAAATGCTTGAAGGTGTTAAAGAAAAGCTGTTGAAGAAAAGGATTCAGGAGATAGTAAAAGAGTGTCTCAGTTCTACTATAAAAAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

416

Amino Acids

45.52

Weight (kDa)

5.26

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 2 - 281 1.4e-42 RCC1-like domain
RCC1_2 PF13540 48 - 85 9.8e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 75 - 124 1.4e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 138 - 184 1.4e-08 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 99
AciI CCGC 3 cut(s) 99, 159, 329
AclWI GGATC 4 cut(s) 222, 672, 685, 1115
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 2 cut(s) 692, 901
AcuI CTGAAG 1 cut(s) 924
AfaI GTAC 2 cut(s) 31, 1005
AfiI CCNNNNNNNGG 3 cut(s) 120, 121, 187
AgsI TTSAA 6 cut(s) 868, 950, 968, 1017, 1169, 1192
AhlI ACTAGT 1 cut(s) 545
AleI CACNNNNGTG 3 cut(s) 143, 546, 836
AluBI AGCT 4 cut(s) 365, 763, 1132, 1186
AluI AGCT 4 cut(s) 365, 763, 1132, 1186
Alw26I GTCTC 3 cut(s) 389, 602, 1229
AlwI GGATC 4 cut(s) 222, 672, 685, 1115
AlwNI CAGNNNCTG 2 cut(s) 667, 1124
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 133, 259, 424, 845
ApeKI GCWGC 3 cut(s) 66, 69, 725
ApoI RAATTY 2 cut(s) 692, 901
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp718I GGTACC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 1 cut(s) 907
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 706
BalI TGGCCA 1 cut(s) 135
BamHI GGATCC 1 cut(s) 677
BanI GGYRCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 930
BbvI GCAGC 3 cut(s) 78, 81, 712
BccI CCATC 3 cut(s) 580, 746, 979
BceAI ACGGC 1 cut(s) 204
BcgI CGANNNNNNTGC 4 cut(s) 796, 830, 1042, 1076
BcoDI GTCTC 3 cut(s) 389, 602, 1229
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 6 cut(s) 11, 59, 182, 546, 618, 1109
BfmI CTRYAG 1 cut(s) 561
BisI GCNGC 3 cut(s) 67, 70, 726
BlsI GCNGC 3 cut(s) 68, 71, 727
Bme18I GGWCC 1 cut(s) 706
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 4 cut(s) 31, 457, 679, 702
BmrI ACTGGG 2 cut(s) 110, 636
BmsI GCATC 3 cut(s) 604, 625, 634
BmuI ACTGGG 2 cut(s) 110, 636
BpiI GAAGAC 1 cut(s) 930
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 1054
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 4 cut(s) 130, 262, 427, 1032
BsaWI WCCGGW 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 121, 187
Bse118I RCCGGY 1 cut(s) 703
Bse1I ACTGG 2 cut(s) 116, 631
BseDI CCNNGG 4 cut(s) 130, 262, 427, 1032
BseGI GGATG 4 cut(s) 45, 423, 591, 649
BseLI CCNNNNNNNGG 3 cut(s) 120, 121, 187
BseMII CTCAG 1 cut(s) 1240
BseNI ACTGG 2 cut(s) 116, 631
BseXI GCAGC 3 cut(s) 78, 81, 712
BshFI GGCC 4 cut(s) 135, 261, 426, 847
BshNI GGYRCC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 280, 704
BslFI GGGAC 2 cut(s) 643, 1112
BslI CCNNNNNNNGG 3 cut(s) 120, 121, 187
BsmAI GTCTC 3 cut(s) 389, 602, 1229
BsmFI GGGAC 2 cut(s) 643, 1112
BsmI GAATGC 1 cut(s) 1110
BsnI GGCC 4 cut(s) 135, 261, 426, 847
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 5 cut(s) 214, 516, 677, 1053, 1120
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 3 cut(s) 99, 159, 329
BspANI GGCC 4 cut(s) 135, 261, 426, 847
BspCNI CTCAG 1 cut(s) 1239
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 4 cut(s) 31, 457, 679, 702
BspMAI CTGCAG 1 cut(s) 565
BspPI GGATC 4 cut(s) 222, 672, 685, 1115
BspQI GCTCTTC 1 cut(s) 1032
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 703
BsrI ACTGG 2 cut(s) 116, 631
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 4 cut(s) 130, 262, 427, 1032
BssMI GATC 5 cut(s) 214, 516, 677, 1053, 1120
BssT1I CCWWGG 3 cut(s) 130, 427, 1032
Bst4CI ACNGT 6 cut(s) 142, 487, 530, 736, 821, 835
Bst6I CTCTTC 2 cut(s) 891, 1032
BstAPI GCANNNNNTGC 2 cut(s) 644, 1124
BstC8I GCNNGC 2 cut(s) 157, 1000
BstDEI CTNAG 1 cut(s) 1226
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 4 cut(s) 45, 423, 591, 649
BstKTI GATC 5 cut(s) 217, 519, 680, 1056, 1123
BstMAI GTCTC 3 cut(s) 389, 602, 1229
BstMBI GATC 5 cut(s) 214, 516, 677, 1053, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 350, 448, 644, 1124
BstNSI RCATGY 4 cut(s) 159, 173, 348, 412
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 78, 81, 712
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 3 cut(s) 214, 677, 1120
BstYI RGATCY 3 cut(s) 214, 677, 1120
BsuRI GGCC 4 cut(s) 135, 261, 426, 847
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 4 cut(s) 45, 423, 591, 649
BtsI GCAGTG 2 cut(s) 79, 987
BtsIMutI CAGTG 4 cut(s) 79, 123, 831, 987
Cac8I GCNNGC 2 cut(s) 157, 1000
CaiI CAGNNNCTG 2 cut(s) 667, 1124
CciI TCATGA 1 cut(s) 1078
Cfr10I RCCGGY 1 cut(s) 703
Cfr13I GGNCC 1 cut(s) 706
Csp6I GTAC 2 cut(s) 30, 1004
CviQI GTAC 2 cut(s) 30, 1004
DdeI CTNAG 1 cut(s) 1226
DpnI GATC 5 cut(s) 216, 518, 679, 1055, 1122
DpnII GATC 5 cut(s) 214, 516, 677, 1053, 1120
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 891, 1032
EarI CTCTTC 2 cut(s) 891, 1032
Eco130I CCWWGG 3 cut(s) 130, 427, 1032
Eco147I AGGCCT 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 901
EcoT14I CCWWGG 3 cut(s) 130, 427, 1032
ErhI CCWWGG 3 cut(s) 130, 427, 1032
FaqI GGGAC 2 cut(s) 643, 1112
Fnu4HI GCNGC 3 cut(s) 67, 70, 726
FokI GGATG 4 cut(s) 52, 430, 598, 656
Fsp4HI GCNGC 3 cut(s) 67, 70, 726
FspBI CTAG 6 cut(s) 11, 59, 182, 546, 618, 1109
GluI GCNGC 3 cut(s) 67, 70, 726
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 4 cut(s) 135, 261, 426, 847
HapII CCGG 2 cut(s) 280, 704
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 6 cut(s) 283, 317, 664, 912, 1112, 1201
HpaII CCGG 2 cut(s) 280, 704
HphI GGTGA 1 cut(s) 907
Hpy166II GTNNAC 2 cut(s) 56, 526
Hpy188I TCNGA 3 cut(s) 516, 800, 1053
Hpy188III TCNNGA 5 cut(s) 290, 479, 698, 1079, 1205
Hpy8I GTNNAC 2 cut(s) 56, 526
HpyAV CCTTC 4 cut(s) 71, 142, 586, 1163
HpyCH4III ACNGT 6 cut(s) 142, 487, 530, 736, 821, 835
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 563, 638, 1063
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 448, 644, 1124
HpyF3I CTNAG 1 cut(s) 1226
HpySE526I ACGT 1 cut(s) 200
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 214, 516, 677, 1053, 1120
LguI GCTCTTC 1 cut(s) 1032
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 3 cut(s) 78, 81, 712
LweI GCATC 3 cut(s) 604, 625, 634
MaeI CTAG 6 cut(s) 11, 59, 182, 546, 618, 1109
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 4 cut(s) 184, 239, 671, 913
MalI GATC 5 cut(s) 216, 518, 679, 1055, 1122
MbiI CCGCTC 1 cut(s) 99
MboI GATC 5 cut(s) 214, 516, 677, 1053, 1120
MboII GAAGA 9 cut(s) 314, 795, 887, 908, 930, 956, 962, 1049, 1204
MfeI CAATTG 2 cut(s) 49, 945
MflI RGATCY 3 cut(s) 214, 677, 1120
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 5 cut(s) 49, 494, 692, 901, 945
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 3 cut(s) 311, 921, 1121
MmeI TCCRAC 2 cut(s) 134, 1122
MnlI CCTC 7 cut(s) 205, 272, 307, 481, 773, 853, 858
Mox20I TGGCCA 1 cut(s) 135
MscI TGGCCA 1 cut(s) 135
MseI TTAA 2 cut(s) 309, 1176
MslI CAYNNNNRTG 3 cut(s) 143, 546, 836
Msp20I TGGCCA 1 cut(s) 135
MspI CCGG 2 cut(s) 280, 704
MunI CAATTG 2 cut(s) 49, 945
Mva1269I GAATGC 1 cut(s) 1110
MwoI GCNNNNNNNGC 4 cut(s) 350, 448, 644, 1124
NcoI CCATGG 1 cut(s) 130
NdeII GATC 5 cut(s) 214, 516, 677, 1053, 1120
NlaIV GGNNCC 4 cut(s) 31, 457, 679, 702
NmuCI GTSAC 2 cut(s) 184, 913
NspI RCATGY 4 cut(s) 159, 173, 348, 412
OliI CACNNNNGTG 3 cut(s) 143, 546, 836
PaeI GCATGC 1 cut(s) 159
PagI TCATGA 1 cut(s) 1078
PceI AGGCCT 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 1032
PctI GAATGC 1 cut(s) 1110
PfeI GAWTC 3 cut(s) 283, 664, 1201
PkrI GCNGC 3 cut(s) 68, 71, 727
PleI GAGTC 3 cut(s) 311, 920, 1120
PpsI GAGTC 3 cut(s) 311, 920, 1120
PspN4I GGNNCC 4 cut(s) 31, 457, 679, 702
PspPI GGNCC 1 cut(s) 706
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 2 cut(s) 667, 1124
PsuI RGATCY 3 cut(s) 214, 677, 1120
RsaI GTAC 2 cut(s) 31, 1005
RsaNI GTAC 2 cut(s) 30, 1004
RseI CAYNNNNRTG 3 cut(s) 143, 546, 836
SapI GCTCTTC 1 cut(s) 1032
SaqAI TTAA 2 cut(s) 309, 1176
SatI GCNGC 3 cut(s) 67, 70, 726
Sau3AI GATC 5 cut(s) 214, 516, 677, 1053, 1120
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 3 cut(s) 311, 921, 1121
SfaNI GCATC 3 cut(s) 604, 625, 634
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 3 cut(s) 143, 546, 836
SmlI CTYRAG 1 cut(s) 1069
SmoI CTYRAG 1 cut(s) 1069
SpeI ACTAGT 1 cut(s) 545
SphI GCATGC 1 cut(s) 159
Sse9I AATT 5 cut(s) 49, 494, 692, 901, 945
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 3 cut(s) 99, 159, 329
SspI AATATT 1 cut(s) 1020
SspMI CTAG 6 cut(s) 11, 59, 182, 546, 618, 1109
StuI AGGCCT 1 cut(s) 261
StyI CCWWGG 3 cut(s) 130, 427, 1032
TaaI ACNGT 6 cut(s) 142, 487, 530, 736, 821, 835
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 816
TaqII GACCGA 1 cut(s) 590
TasI AATT 5 cut(s) 49, 494, 692, 901, 945
TfiI GAWTC 3 cut(s) 283, 664, 1201
Tru1I TTAA 2 cut(s) 309, 1176
Tru9I TTAA 2 cut(s) 309, 1176
TscAI CASTG 4 cut(s) 79, 123, 838, 987
TseFI GTSAC 2 cut(s) 184, 913
TseI GCWGC 3 cut(s) 66, 69, 725
Tsp45I GTSAC 2 cut(s) 184, 913
TspDTI ATGAA 4 cut(s) 351, 546, 998, 1067
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 4 cut(s) 79, 123, 838, 987
VpaK11BI GGWCC 1 cut(s) 706
XapI RAATTY 2 cut(s) 692, 901
XceI RCATGY 4 cut(s) 159, 173, 348, 412
XcmI CCANNNNNNNNNTGG 2 cut(s) 117, 716
XspI CTAG 6 cut(s) 11, 59, 182, 546, 618, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.