Rh6AG461100

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013356
Physical Location & Seq
Reverse (-)
64401851 .. 64405162
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG461100.1

Sequence Viewer

Length: 1329 bp
ATGCTGTCTTTTTGTTGCCACTTATGTCTACATCAGGTTTGTTCTGTTAAGGCTGGAGGAATGATGTCGCTAGCAATAGATAATCTCGGTACCCTTTGGATGTGGGGCAATTGTCCACTAGAAAGCAGCAGCAGTGAAGGTGGTTTCTCTCTTGTGAGCAGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACACGGTTGTGAAGGTAGCATGCGGAAATGAGCATGTGGTAGCCCTAGTCACGGCTGGAGAAACGTATAAAGGTGAAGATCTTATATGCTTCTCTTGGGGTAGTAACAATCACGGGCAGTTAGGCCTCGGGGATAAAGAGAACCGGAATCGTCCTGAAATAGTAGAAGATTTTAACGAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACGGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAAAGCATGTGCTGGACGTTTGGCCTTGGAGAGAATGGGCAACTTGGGCATGGAACCACCCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAATATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTATTGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTGTGTAACGGATCCAATGGGTCTAAATTTCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTTCTCCCACTGTTGTGTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATGCTGTTGGGGAGGGAGACAGAATTGCGGAAGAGAATTCTAAAGGAGTCACCAAAACAGAAAAAGCCTTGTCTTCAGCAATTGAAGAAACGAAAATTCTTCAATCAAAACTCGCAGTGATGGAACGATATGCTGGCATACTTCATGGTTCAATATTTGGAAAACCCTTGGAAGAGCAGGATATTCCGATCTCCTTGCAGAACTCAGGTATTCATGACATTGGAAAGGAATGGGACAGAATGCTAGAGTCAGCAGATCCTGCGAAGCTCGTAAGGTTGGAAAAGTTCTATCAAAAAATGCTTGAAGGTGTTAAAGAAAAGCTGTTGAAGAAAAGGATTCAGGAGCTAGTTAAAGAGTGTCTCAGTTCTACTATAAACAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

442

Amino Acids

48.11

Weight (kDa)

5.25

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 12 - 305 2.9e-45 RCC1-like domain
RCC1_2 PF13540 68 - 105 1.2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 95 - 144 1.6e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 158 - 204 3.8e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 28
AciI CCGC 3 cut(s) 219, 389, 971
AclWI GGATC 3 cut(s) 732, 745, 1193
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 3 cut(s) 752, 979, 1038
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 3 cut(s) 180, 181, 247
AgsI TTSAA 6 cut(s) 928, 1028, 1046, 1095, 1247, 1270
AhlI ACTAGT 1 cut(s) 605
AleI CACNNNNGTG 2 cut(s) 203, 896
AluBI AGCT 4 cut(s) 823, 1210, 1264, 1288
AluI AGCT 4 cut(s) 823, 1210, 1264, 1288
Alw26I GTCTC 4 cut(s) 449, 662, 954, 1307
AlwI GGATC 3 cut(s) 732, 745, 1193
AlwNI CAGNNNCTG 2 cut(s) 727, 1202
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 193, 319, 484, 905
ApeKI GCWGC 3 cut(s) 126, 129, 785
ApoI RAATTY 3 cut(s) 752, 979, 1038
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
Asp718I GGTACC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 766
AsuHPI GGTGA 2 cut(s) 281, 985
AsuNHI GCTAGC 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 766
BalI TGGCCA 1 cut(s) 195
BamHI GGATCC 1 cut(s) 737
BanI GGYRCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 1008
BbvI GCAGC 3 cut(s) 138, 141, 772
BccI CCATC 3 cut(s) 640, 806, 1057
BceAI ACGGC 2 cut(s) 264, 438
BcgI CGANNNNNNTGC 4 cut(s) 856, 890, 1120, 1154
BcoDI GTCTC 4 cut(s) 449, 662, 954, 1307
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 7 cut(s) 71, 119, 242, 606, 678, 1187, 1289
BfmI CTRYAG 1 cut(s) 621
BglII AGATCT 1 cut(s) 274
BisI GCNGC 3 cut(s) 127, 130, 786
BlsI GCNGC 3 cut(s) 128, 131, 787
Bme18I GGWCC 1 cut(s) 766
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 4 cut(s) 91, 517, 739, 762
BmrI ACTGGG 2 cut(s) 170, 696
BmsI GCATC 3 cut(s) 664, 685, 694
BmtI GCTAGC 1 cut(s) 74
BmuI ACTGGG 2 cut(s) 170, 696
BpiI GAAGAC 1 cut(s) 1008
BpmI CTGGAG 2 cut(s) 75, 273
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 4 cut(s) 190, 322, 487, 1110
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 181, 247
Bse118I RCCGGY 1 cut(s) 763
Bse1I ACTGG 2 cut(s) 176, 691
BseDI CCNNGG 4 cut(s) 190, 322, 487, 1110
BseGI GGATG 3 cut(s) 105, 651, 709
BseLI CCNNNNNNNGG 3 cut(s) 180, 181, 247
BseMII CTCAG 2 cut(s) 1161, 1318
BseNI ACTGG 2 cut(s) 176, 691
BseXI GCAGC 3 cut(s) 138, 141, 772
BshFI GGCC 4 cut(s) 195, 321, 486, 907
BshNI GGYRCC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 2 cut(s) 340, 764
BslFI GGGAC 2 cut(s) 703, 1190
BslI CCNNNNNNNGG 3 cut(s) 180, 181, 247
BsmAI GTCTC 4 cut(s) 449, 662, 954, 1307
BsmFI GGGAC 2 cut(s) 703, 1190
BsmI GAATGC 1 cut(s) 1188
BsnI GGCC 4 cut(s) 195, 321, 486, 907
Bso31I GGTCTC 1 cut(s) 662
BsoBI CYCGRG 1 cut(s) 323
Bsp143I GATC 5 cut(s) 274, 576, 737, 1131, 1198
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 3 cut(s) 219, 389, 971
BspANI GGCC 4 cut(s) 195, 321, 486, 907
BspCNI CTCAG 2 cut(s) 1160, 1317
BspHI TCATGA 1 cut(s) 1156
BspLI GGNNCC 4 cut(s) 91, 517, 739, 762
BspMAI CTGCAG 1 cut(s) 625
BspOI GCTAGC 1 cut(s) 74
BspPI GGATC 3 cut(s) 732, 745, 1193
BspQI GCTCTTC 1 cut(s) 1110
BspT107I GGYRCC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 763
BsrI ACTGG 2 cut(s) 176, 691
BssAI RCCGGY 1 cut(s) 763
BssECI CCNNGG 4 cut(s) 190, 322, 487, 1110
BssMI GATC 5 cut(s) 274, 576, 737, 1131, 1198
BssT1I CCWWGG 3 cut(s) 190, 487, 1110
Bst4CI ACNGT 6 cut(s) 202, 547, 590, 796, 881, 895
Bst6I CTCTTC 2 cut(s) 969, 1110
BstAPI GCANNNNNTGC 2 cut(s) 704, 1202
BstC8I GCNNGC 3 cut(s) 72, 217, 1078
BstDEI CTNAG 2 cut(s) 1147, 1304
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 3 cut(s) 105, 651, 709
BstKTI GATC 5 cut(s) 277, 579, 740, 1134, 1201
BstMAI GTCTC 4 cut(s) 449, 662, 954, 1307
BstMBI GATC 5 cut(s) 274, 576, 737, 1131, 1198
BstMWI GCNNNNNNNGC 4 cut(s) 410, 508, 704, 1202
BstNSI RCATGY 4 cut(s) 219, 233, 408, 472
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 3 cut(s) 138, 141, 772
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 3 cut(s) 274, 737, 1198
BstYI RGATCY 3 cut(s) 274, 737, 1198
BsuRI GGCC 4 cut(s) 195, 321, 486, 907
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 3 cut(s) 105, 651, 709
BtsI GCAGTG 2 cut(s) 139, 1065
BtsIMutI CAGTG 4 cut(s) 139, 183, 891, 1065
Cac8I GCNNGC 3 cut(s) 72, 217, 1078
CaiI CAGNNNCTG 2 cut(s) 727, 1202
CciI TCATGA 1 cut(s) 1156
Cfr10I RCCGGY 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 766
Csp6I GTAC 1 cut(s) 90
CviAII CATG 9 cut(s) 191, 216, 230, 405, 469, 512, 639, 1088, 1157
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 1147, 1304
DpnI GATC 5 cut(s) 276, 578, 739, 1133, 1200
DpnII GATC 5 cut(s) 274, 576, 737, 1131, 1198
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 969, 1110
EarI CTCTTC 2 cut(s) 969, 1110
Eco130I CCWWGG 3 cut(s) 190, 487, 1110
Eco147I AGGCCT 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 979
EcoT14I CCWWGG 3 cut(s) 190, 487, 1110
ErhI CCWWGG 3 cut(s) 190, 487, 1110
FaeI CATG 9 cut(s) 194, 219, 233, 408, 472, 515, 642, 1091, 1160
FaqI GGGAC 2 cut(s) 703, 1190
FatI CATG 9 cut(s) 190, 215, 229, 404, 468, 511, 638, 1087, 1156
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 127, 130, 786
FokI GGATG 3 cut(s) 112, 658, 716
Fsp4HI GCNGC 3 cut(s) 127, 130, 786
FspBI CTAG 7 cut(s) 71, 119, 242, 606, 678, 1187, 1289
GluI GCNGC 3 cut(s) 127, 130, 786
GsuI CTGGAG 2 cut(s) 75, 273
HaeIII GGCC 4 cut(s) 195, 321, 486, 907
HapII CCGG 2 cut(s) 340, 764
Hin1II CATG 9 cut(s) 194, 219, 233, 408, 472, 515, 642, 1091, 1160
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 6 cut(s) 343, 377, 724, 990, 1190, 1279
HpaII CCGG 2 cut(s) 340, 764
HphI GGTGA 2 cut(s) 281, 985
Hpy166II GTNNAC 3 cut(s) 29, 116, 586
Hpy188I TCNGA 3 cut(s) 576, 860, 1131
Hpy188III TCNNGA 5 cut(s) 350, 539, 758, 1157, 1283
Hpy8I GTNNAC 3 cut(s) 29, 116, 586
HpyAV CCTTC 4 cut(s) 131, 202, 646, 1241
HpyCH4III ACNGT 6 cut(s) 202, 547, 590, 796, 881, 895
HpyCH4IV ACGT 2 cut(s) 260, 479
HpyCH4V TGCA 3 cut(s) 623, 698, 1141
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 508, 704, 1202
HpyF3I CTNAG 2 cut(s) 1147, 1304
HpySE526I ACGT 2 cut(s) 260, 479
Hsp92II CATG 9 cut(s) 194, 219, 233, 408, 472, 515, 642, 1091, 1160
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 5 cut(s) 274, 576, 737, 1131, 1198
LguI GCTCTTC 1 cut(s) 1110
LmnI GCTCC 2 cut(s) 760, 1285
Lsp1109I GCAGC 3 cut(s) 138, 141, 772
LweI GCATC 3 cut(s) 664, 685, 694
MaeI CTAG 7 cut(s) 71, 119, 242, 606, 678, 1187, 1289
MaeII ACGT 2 cut(s) 260, 479
MaeIII GTNAC 4 cut(s) 244, 299, 731, 991
MalI GATC 5 cut(s) 276, 578, 739, 1133, 1200
MboI GATC 5 cut(s) 274, 576, 737, 1131, 1198
MfeI CAATTG 2 cut(s) 109, 1023
MflI RGATCY 3 cut(s) 274, 737, 1198
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 7 cut(s) 109, 554, 752, 966, 979, 1023, 1038
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 3 cut(s) 371, 999, 1199
MmeI TCCRAC 2 cut(s) 194, 1200
MnlI CCTC 8 cut(s) 50, 332, 367, 541, 833, 913, 918, 949
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 4 cut(s) 48, 369, 1254, 1293
MslI CAYNNNNRTG 2 cut(s) 203, 896
Msp20I TGGCCA 1 cut(s) 195
MspI CCGG 2 cut(s) 340, 764
MunI CAATTG 2 cut(s) 109, 1023
Mva1269I GAATGC 1 cut(s) 1188
MwoI GCNNNNNNNGC 4 cut(s) 410, 508, 704, 1202
NcoI CCATGG 1 cut(s) 190
NdeII GATC 5 cut(s) 274, 576, 737, 1131, 1198
NheI GCTAGC 1 cut(s) 70
NlaIII CATG 9 cut(s) 194, 219, 233, 408, 472, 515, 642, 1091, 1160
NlaIV GGNNCC 4 cut(s) 91, 517, 739, 762
NmuCI GTSAC 2 cut(s) 244, 991
NspI RCATGY 4 cut(s) 219, 233, 408, 472
OliI CACNNNNGTG 2 cut(s) 203, 896
PaeI GCATGC 1 cut(s) 219
PagI TCATGA 1 cut(s) 1156
PceI AGGCCT 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 1110
PctI GAATGC 1 cut(s) 1188
PfeI GAWTC 3 cut(s) 343, 724, 1279
PkrI GCNGC 3 cut(s) 128, 131, 787
PleI GAGTC 3 cut(s) 371, 998, 1198
PpsI GAGTC 3 cut(s) 371, 998, 1198
PspN4I GGNNCC 4 cut(s) 91, 517, 739, 762
PspPI GGNCC 1 cut(s) 766
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 2 cut(s) 727, 1202
PsuI RGATCY 3 cut(s) 274, 737, 1198
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
RseI CAYNNNNRTG 2 cut(s) 203, 896
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 4 cut(s) 48, 369, 1254, 1293
SatI GCNGC 3 cut(s) 127, 130, 786
Sau3AI GATC 5 cut(s) 274, 576, 737, 1131, 1198
Sau96I GGNCC 1 cut(s) 766
SchI GAGTC 3 cut(s) 371, 999, 1199
SfaNI GCATC 3 cut(s) 664, 685, 694
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 1 cut(s) 766
SmiMI CAYNNNNRTG 2 cut(s) 203, 896
SpeI ACTAGT 1 cut(s) 605
SphI GCATGC 1 cut(s) 219
Sse9I AATT 7 cut(s) 109, 554, 752, 966, 979, 1023, 1038
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 3 cut(s) 219, 389, 971
SspI AATATT 1 cut(s) 1098
SspMI CTAG 7 cut(s) 71, 119, 242, 606, 678, 1187, 1289
StuI AGGCCT 1 cut(s) 321
StyI CCWWGG 3 cut(s) 190, 487, 1110
TaaI ACNGT 6 cut(s) 202, 547, 590, 796, 881, 895
TaiI ACGT 2 cut(s) 263, 482
TaqI TCGA 1 cut(s) 876
TaqII GACCGA 1 cut(s) 650
TasI AATT 7 cut(s) 109, 554, 752, 966, 979, 1023, 1038
TfiI GAWTC 3 cut(s) 343, 724, 1279
Tru1I TTAA 4 cut(s) 48, 369, 1254, 1293
Tru9I TTAA 4 cut(s) 48, 369, 1254, 1293
TscAI CASTG 4 cut(s) 139, 183, 898, 1065
TseFI GTSAC 2 cut(s) 244, 991
TseI GCWGC 3 cut(s) 126, 129, 785
Tsp45I GTSAC 2 cut(s) 244, 991
TspDTI ATGAA 4 cut(s) 411, 606, 1076, 1145
TspGWI ACGGA 1 cut(s) 750
TspRI CASTG 4 cut(s) 139, 183, 898, 1065
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 3 cut(s) 752, 979, 1038
XceI RCATGY 4 cut(s) 219, 233, 408, 472
XcmI CCANNNNNNNNNTGG 2 cut(s) 177, 776
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 7 cut(s) 71, 119, 242, 606, 678, 1187, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.