RchiOBHm_Chr6g0306371

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013356
Physical Location & Seq
Reverse (-)
65100594 .. 65103836
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27539

Sequence Viewer

Length: 1509 bp
ATGGTGATTGCTGGAATAGGCTTTACTACCTGTTTTGATGATCTTTGTTCTGAGTTTATTGAGTCTTTGATTCTTGAAATTTTTAGCAGATGTTTGTGGCAGACATTGAAATTAGTAGATGATGAGATAGTGGTGTTGCATAAGATAAGACTTATGGGCTTCTTCTTGTTCTATTATGATGGGTCCATTTGGTGTTGGGAAAATTCTCTAGTACCCTGCTTGCTAGAGCGATTCCTTGAGTTGGGCTCTGGAACGAGGAGTGAAGTGCCACTACAGGTTTGTTCTGTTAAGGCTGAAGGAATGATGTCCCTAGCAATAGATAATCTTGGTACCCTTTGGATGTGGGGCAACTGTCCACCAGAAAGCAGCAGTAGTGAAGGTGGGTTCTCTCTTGTGAGCAGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACACGGTTGTGAAGGTAGCATGCGGAAATGAGCATGTAGTAGCCCTAGTCACGGCTGGAGAAACATATAAAGGTGAAGATCTTATATGCTTCTCTTGGGGTAGTAACAATCATGGGCAGTTAGGCCTTGGGGATAAAGAGAACCGGAATCGTCCTGAAATAGTAGAAGATTTTAACGAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTATCACACAGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAAAGCATGTGCTGGACGTTTGGCCTTGGAGAAAATGGGCAACTTGGGCATGGAACCACCCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAATATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTGTAGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTCTGTAACGGATCCAATGGGTCTAAATTTCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTTCTCCCACTGTTGTGTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATAGTGTTGGGGAGGGAGACAGAATTGCGGAAGAGAATTCTAAAAGAGTCACCAAAACAGAAAAAGCCTTGTCTTCAGCAATTGAAGAAACGAAACTTCTTCAATCAAAACTCGCAGTGATGGAACGATATGCTGGCATACTTCATGGTTCAATATTTGGAAAACCCTTGGAAGAGCAGGATATTCCGATCTCCTTGCAGAACTCAGGCATTCATGACATTGGAAAGGAATGGGACAGAATGCTAGAGTCAGCAGATCCTGCGAAGCTCGTAAGGTTGGAAAAGTTCTATCAAAAATGCTTGAAGGTGTTAAAGAAAAGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

502

Amino Acids

55.19

Weight (kDa)

4.93

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 88 - 385 1.4e-45 RCC1-like domain
RCC1_2 PF13540 148 - 185 1.5e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 175 - 224 6.6e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 238 - 284 3.5e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 329
AciI CCGC 3 cut(s) 459, 629, 1211
AclWI GGATC 3 cut(s) 972, 985, 1433
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 4 cut(s) 78, 202, 992, 1219
AcuI CTGAAG 2 cut(s) 315, 1242
AfaI GTAC 2 cut(s) 213, 331
AfiI CCNNNNNNNGG 4 cut(s) 241, 420, 421, 487
AgsI TTSAA 7 cut(s) 77, 109, 1168, 1268, 1286, 1335, 1486
AhlI ACTAGT 1 cut(s) 845
AleI CACNNNNGTG 3 cut(s) 443, 846, 1136
AluBI AGCT 4 cut(s) 665, 1063, 1450, 1503
AluI AGCT 4 cut(s) 665, 1063, 1450, 1503
Alw26I GTCTC 3 cut(s) 689, 902, 1194
AlwI GGATC 3 cut(s) 972, 985, 1433
AlwNI CAGNNNCTG 1 cut(s) 1442
AoxI GGCC 4 cut(s) 433, 559, 724, 1145
ApeKI GCWGC 2 cut(s) 366, 1025
ApoI RAATTY 4 cut(s) 78, 202, 992, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
Asp718I GGTACC 1 cut(s) 329
AspS9I GGNCC 2 cut(s) 183, 1006
AsuHPI GGTGA 3 cut(s) 16, 521, 1225
AvaII GGWCC 2 cut(s) 183, 1006
BalI TGGCCA 1 cut(s) 435
BamHI GGATCC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 248
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BbsI GAAGAC 1 cut(s) 1248
BbvI GCAGC 2 cut(s) 378, 1012
BccI CCATC 4 cut(s) 173, 880, 1046, 1297
BceAI ACGGC 1 cut(s) 504
BcgI CGANNNNNNTGC 4 cut(s) 1096, 1130, 1360, 1394
BcoDI GTCTC 3 cut(s) 689, 902, 1194
BcuI ACTAGT 1 cut(s) 845
BfaI CTAG 7 cut(s) 209, 224, 311, 482, 846, 918, 1427
BfmI CTRYAG 2 cut(s) 272, 861
BglII AGATCT 1 cut(s) 514
BisI GCNGC 2 cut(s) 367, 1026
BlsI GCNGC 2 cut(s) 368, 1027
Bme18I GGWCC 2 cut(s) 183, 1006
BmgT120I GGNCC 2 cut(s) 183, 1006
BmiI GGNNCC 5 cut(s) 184, 331, 757, 979, 1002
BmrI ACTGGG 2 cut(s) 410, 936
BmsI GCATC 3 cut(s) 904, 925, 934
BmuI ACTGGG 2 cut(s) 410, 936
BpiI GAAGAC 1 cut(s) 1248
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 4 cut(s) 430, 562, 727, 1350
BsaWI WCCGGW 1 cut(s) 579
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 420, 421, 487
Bse118I RCCGGY 1 cut(s) 1003
Bse1I ACTGG 2 cut(s) 416, 931
BseDI CCNNGG 4 cut(s) 430, 562, 727, 1350
BseGI GGATG 3 cut(s) 345, 891, 949
BseLI CCNNNNNNNGG 4 cut(s) 241, 420, 421, 487
BseMII CTCAG 2 cut(s) 42, 1401
BseNI ACTGG 2 cut(s) 416, 931
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 378, 1012
BshFI GGCC 4 cut(s) 435, 561, 726, 1147
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 580, 1004
BslFI GGGAC 3 cut(s) 292, 943, 1430
BslI CCNNNNNNNGG 4 cut(s) 241, 420, 421, 487
BsmAI GTCTC 3 cut(s) 689, 902, 1194
BsmFI GGGAC 3 cut(s) 292, 943, 1430
BsmI GAATGC 2 cut(s) 1392, 1428
BsnI GGCC 4 cut(s) 435, 561, 726, 1147
Bso31I GGTCTC 1 cut(s) 902
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
Bsp19I CCATGG 1 cut(s) 430
BspACI CCGC 3 cut(s) 459, 629, 1211
BspANI GGCC 4 cut(s) 435, 561, 726, 1147
BspCNI CTCAG 2 cut(s) 43, 1400
BspHI TCATGA 1 cut(s) 1396
BspLI GGNNCC 5 cut(s) 184, 331, 757, 979, 1002
BspMAI CTGCAG 1 cut(s) 865
BspPI GGATC 3 cut(s) 972, 985, 1433
BspQI GCTCTTC 1 cut(s) 1350
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 902
BsrFI RCCGGY 1 cut(s) 1003
BsrI ACTGG 2 cut(s) 416, 931
BssAI RCCGGY 1 cut(s) 1003
BssECI CCNNGG 4 cut(s) 430, 562, 727, 1350
BssMI GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
BssT1I CCWWGG 4 cut(s) 430, 562, 727, 1350
Bst4CI ACNGT 7 cut(s) 353, 442, 787, 830, 1036, 1121, 1135
Bst6I CTCTTC 2 cut(s) 1209, 1350
BstAPI GCANNNNNTGC 2 cut(s) 944, 1442
BstC8I GCNNGC 3 cut(s) 221, 457, 1318
BstDEI CTNAG 2 cut(s) 51, 1387
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 3 cut(s) 345, 891, 949
BstKTI GATC 6 cut(s) 43, 517, 819, 980, 1374, 1441
BstMAI GTCTC 3 cut(s) 689, 902, 1194
BstMBI GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
BstMWI GCNNNNNNNGC 4 cut(s) 650, 748, 944, 1442
BstNSI RCATGY 4 cut(s) 459, 473, 648, 712
BstSFI CTRYAG 2 cut(s) 272, 861
BstV1I GCAGC 2 cut(s) 378, 1012
BstV2I GAAGAC 1 cut(s) 1248
BstX2I RGATCY 3 cut(s) 514, 977, 1438
BstYI RGATCY 3 cut(s) 514, 977, 1438
BsuRI GGCC 4 cut(s) 435, 561, 726, 1147
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 3 cut(s) 345, 891, 949
BtsI GCAGTG 1 cut(s) 1305
BtsIMutI CAGTG 3 cut(s) 423, 1131, 1305
Cac8I GCNNGC 3 cut(s) 221, 457, 1318
CaiI CAGNNNCTG 1 cut(s) 1442
CciI TCATGA 1 cut(s) 1396
Cfr10I RCCGGY 1 cut(s) 1003
Cfr13I GGNCC 2 cut(s) 183, 1006
Csp6I GTAC 2 cut(s) 212, 330
CviQI GTAC 2 cut(s) 212, 330
DdeI CTNAG 2 cut(s) 51, 1387
DpnI GATC 6 cut(s) 42, 516, 818, 979, 1373, 1440
DpnII GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 1209, 1350
EarI CTCTTC 2 cut(s) 1209, 1350
Eco130I CCWWGG 4 cut(s) 430, 562, 727, 1350
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 902
Eco47I GGWCC 2 cut(s) 183, 1006
Eco57I CTGAAG 2 cut(s) 315, 1242
EcoRI GAATTC 1 cut(s) 1219
EcoT14I CCWWGG 4 cut(s) 430, 562, 727, 1350
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 4 cut(s) 430, 562, 727, 1350
FaqI GGGAC 3 cut(s) 292, 943, 1430
Fnu4HI GCNGC 2 cut(s) 367, 1026
FokI GGATG 3 cut(s) 352, 898, 956
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 367, 1026
FspBI CTAG 7 cut(s) 209, 224, 311, 482, 846, 918, 1427
GluI GCNGC 2 cut(s) 367, 1026
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 4 cut(s) 435, 561, 726, 1147
HapII CCGG 2 cut(s) 580, 1004
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 8 cut(s) 62, 70, 231, 583, 617, 964, 1230, 1430
HpaII CCGG 2 cut(s) 580, 1004
HphI GGTGA 3 cut(s) 16, 521, 1225
Hpy166II GTNNAC 2 cut(s) 356, 826
Hpy188I TCNGA 4 cut(s) 52, 816, 1100, 1371
Hpy188III TCNNGA 6 cut(s) 74, 249, 590, 779, 998, 1397
Hpy8I GTNNAC 2 cut(s) 356, 826
HpyAV CCTTC 5 cut(s) 290, 371, 442, 886, 1480
HpyCH4III ACNGT 7 cut(s) 353, 442, 787, 830, 1036, 1121, 1135
HpyCH4IV ACGT 1 cut(s) 719
HpyCH4V TGCA 4 cut(s) 139, 863, 938, 1381
HpyF10VI GCNNNNNNNGC 4 cut(s) 650, 748, 944, 1442
HpyF3I CTNAG 2 cut(s) 51, 1387
HpySE526I ACGT 1 cut(s) 719
KpnI GGTACC 1 cut(s) 333
Kzo9I GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
LguI GCTCTTC 1 cut(s) 1350
LmnI GCTCC 1 cut(s) 1000
Lsp1109I GCAGC 2 cut(s) 378, 1012
LweI GCATC 3 cut(s) 904, 925, 934
MaeI CTAG 7 cut(s) 209, 224, 311, 482, 846, 918, 1427
MaeII ACGT 1 cut(s) 719
MaeIII GTNAC 4 cut(s) 484, 539, 971, 1231
MalI GATC 6 cut(s) 42, 516, 818, 979, 1373, 1440
MboI GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
MfeI CAATTG 1 cut(s) 1263
MflI RGATCY 3 cut(s) 514, 977, 1438
MhlI GDGCHC 1 cut(s) 248
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 8 cut(s) 78, 110, 202, 794, 992, 1206, 1219, 1263
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 4 cut(s) 71, 611, 1239, 1439
MmeI TCCRAC 2 cut(s) 434, 1440
MnlI CCTC 7 cut(s) 249, 607, 781, 1073, 1153, 1158, 1189
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 3 cut(s) 288, 609, 1493
MslI CAYNNNNRTG 3 cut(s) 443, 846, 1136
Msp20I TGGCCA 1 cut(s) 435
MspI CCGG 2 cut(s) 580, 1004
MunI CAATTG 1 cut(s) 1263
Mva1269I GAATGC 2 cut(s) 1392, 1428
MwoI GCNNNNNNNGC 4 cut(s) 650, 748, 944, 1442
NcoI CCATGG 1 cut(s) 430
NdeII GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
NlaIV GGNNCC 5 cut(s) 184, 331, 757, 979, 1002
NmuCI GTSAC 2 cut(s) 484, 1231
NspI RCATGY 4 cut(s) 459, 473, 648, 712
OliI CACNNNNGTG 3 cut(s) 443, 846, 1136
PaeI GCATGC 1 cut(s) 459
PagI TCATGA 1 cut(s) 1396
PceI AGGCCT 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 1350
PctI GAATGC 2 cut(s) 1392, 1428
PfeI GAWTC 4 cut(s) 70, 231, 583, 964
PkrI GCNGC 2 cut(s) 368, 1027
PleI GAGTC 4 cut(s) 70, 611, 1238, 1438
PpsI GAGTC 4 cut(s) 70, 611, 1238, 1438
PspN4I GGNNCC 5 cut(s) 184, 331, 757, 979, 1002
PspPI GGNCC 2 cut(s) 183, 1006
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 1 cut(s) 1442
PsuI RGATCY 3 cut(s) 514, 977, 1438
RsaI GTAC 2 cut(s) 213, 331
RsaNI GTAC 2 cut(s) 212, 330
RseI CAYNNNNRTG 3 cut(s) 443, 846, 1136
SapI GCTCTTC 1 cut(s) 1350
SaqAI TTAA 3 cut(s) 288, 609, 1493
SatI GCNGC 2 cut(s) 367, 1026
Sau3AI GATC 6 cut(s) 40, 514, 816, 977, 1371, 1438
Sau96I GGNCC 2 cut(s) 183, 1006
SchI GAGTC 4 cut(s) 71, 611, 1239, 1439
SduI GDGCHC 1 cut(s) 248
SfaNI GCATC 3 cut(s) 904, 925, 934
SfcI CTRYAG 2 cut(s) 272, 861
SinI GGWCC 2 cut(s) 183, 1006
SmiMI CAYNNNNRTG 3 cut(s) 443, 846, 1136
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SpeI ACTAGT 1 cut(s) 845
SphI GCATGC 1 cut(s) 459
Sse9I AATT 8 cut(s) 78, 110, 202, 794, 992, 1206, 1219, 1263
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 3 cut(s) 459, 629, 1211
SspI AATATT 1 cut(s) 1338
SspMI CTAG 7 cut(s) 209, 224, 311, 482, 846, 918, 1427
StuI AGGCCT 1 cut(s) 561
StyI CCWWGG 4 cut(s) 430, 562, 727, 1350
TaaI ACNGT 7 cut(s) 353, 442, 787, 830, 1036, 1121, 1135
TaiI ACGT 1 cut(s) 722
TaqI TCGA 1 cut(s) 1116
TaqII GACCGA 1 cut(s) 890
TasI AATT 8 cut(s) 78, 110, 202, 794, 992, 1206, 1219, 1263
TfiI GAWTC 4 cut(s) 70, 231, 583, 964
Tru1I TTAA 3 cut(s) 288, 609, 1493
Tru9I TTAA 3 cut(s) 288, 609, 1493
TscAI CASTG 3 cut(s) 423, 1138, 1305
TseFI GTSAC 2 cut(s) 484, 1231
TseI GCWGC 2 cut(s) 366, 1025
Tsp45I GTSAC 2 cut(s) 484, 1231
TspDTI ATGAA 4 cut(s) 651, 846, 1316, 1385
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 3 cut(s) 423, 1138, 1305
VpaK11BI GGWCC 2 cut(s) 183, 1006
XapI RAATTY 4 cut(s) 78, 202, 992, 1219
XceI RCATGY 4 cut(s) 459, 473, 648, 712
XcmI CCANNNNNNNNNTGG 2 cut(s) 417, 1016
XspI CTAG 7 cut(s) 209, 224, 311, 482, 846, 918, 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.