MD15G1093100.v1.1

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013356
Physical Location & Seq
Forward (+)
6451385 .. 6452733
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1093100.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGCTTTTTTTGCATCAGGTTTGTTCTGTTAAAGCTGGAGGAATGACGTCCCTAGCAATTGATAATCTAGGTACCCTTTGGGTGTGGGGAAATTTCCCACATGAAAGCAGCAGCAATGAAGGTGGGTTCTCTCTGGTGAGCAGTTTCACCCCAACTCCTGTTTGGGATTTCCATGGCCACGTTGTTGTGAAGGTGGCATGTGGAAATGAGCACGTTGTGGCCCTGGTTTCTGCCGAAGAAACATATAAAGGTGAAGATCTTGTTTGCTTCTCTTGGGGCGGTAACAGCCATGGCCAGTTAGGCCTGGGGGATAAAGAGAGCAGGAATCGTCCCCAAATAGTAGAACCTTTTGATCACGACTCCTCTTTCGCAGTTTATGAGGTAGCATGTGGGGCATTTCACACGGCTTTGCTCACCCACAAAAAAAGGCCAAGTGACACATTGGAAAGTATGTGCTGGACTTTTGGCCTCGGAGAAAATGGGCAGCTCGGGCATGGAACCACCCGAAGTGGATTGTCTCCTGAACCTGTGAAAGAGTTGCCACAGTACGTATATCTGGTGTCTGTTGACTGTGGCTTATTTCACACTAGTGTTGTTTCGTCCGCGGGAGATGTGTGGTCGTGGGGAATGGAGAAGGGTCTTGGCCTATGCCCAGATGCGAGTTTTAGTAGGACTGATTCGGGGGATGCCATTTCTCCCCTACAGATTAATGAATTGAATGGTGCAAAATTTCAGGATCCAATCCAAGTTGTCTGTGGGGCTGCCCATACTGTTGTTGTTGCAAATGATGGATTTAAACTTTGGTCATGGGGGAGAGGAAGGAGTGGGGTTCTCGGAAATGGTAAGACAACTGACTGTTATTCTCCTGCTGTTGTCTTGTGGCCTCCGCTTGCAGATGATTTCAAGCAAGAAGAATTCAATACTGTCGATAAGAAAAAGCCTCTTGATGACGGAGATAACACTGGTGAAAGAAATTTGACAGAAGACGCCAAAGAAGAGAACAGGTTGTCTTTGGCAATGGAAGAGATGAAGCTTCTGCAGTCAAAACTTTCAGTCATGGAAAAGTATACTGGCATACTTCATGGTTCAATATTCGGAAAACCTTTTAAAGAGCAGGATATTCCAGTCTCGTTGCAGAACTCGGGTACTTATGACATTGCAAAGGAATGGGAGAACATGTTAGAGTCAGCAGATCGGGCCAATCTCGTCAGGCTGGAAAAGTTCTACCGGAACATGCTTGCTGGTGTTAAAGACAAGCTAATGAAGAGAAAGATTCAAGAGATGATAAGGGAATGTCTCGGTTCTTCTTCGATAAATCCAGGCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

443

Amino Acids

48.46

Weight (kDa)

5.3

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 6 - 292 6e-47 RCC1-like domain
RCC1 PF00415 89 - 138 8e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 152 - 198 5.5e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 1067
AccII CGCG 1 cut(s) 605
AciI CCGC 4 cut(s) 279, 603, 605, 887
AclWI GGATC 2 cut(s) 731, 744
AcoI YGGCCR 2 cut(s) 175, 292
AcsI RAATTY 4 cut(s) 91, 728, 914, 973
AcyI GRCGYC 2 cut(s) 47, 987
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 3 cut(s) 73, 548, 1147
AflIII ACRYGT 1 cut(s) 1176
AgsI TTSAA 5 cut(s) 718, 904, 919, 1089, 1277
AhlI ACTAGT 1 cut(s) 587
AjnI CCWGG 3 cut(s) 222, 303, 1318
AleI CACNNNNGTG 1 cut(s) 588
AluBI AGCT 4 cut(s) 35, 487, 1033, 1258
AluI AGCT 4 cut(s) 35, 487, 1033, 1258
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 3 cut(s) 522, 1132, 1301
AlwI GGATC 2 cut(s) 731, 744
Ama87I CYCGRG 2 cut(s) 488, 1141
AoxI GGCC 9 cut(s) 175, 219, 292, 301, 428, 466, 643, 881, 1197
ApeKI GCWGC 4 cut(s) 108, 111, 484, 761
ApoI RAATTY 4 cut(s) 91, 728, 914, 973
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AseI ATTAAT 1 cut(s) 708
Asp718I GGTACC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 220, 1197
AsuHPI GGTGA 5 cut(s) 139, 148, 263, 406, 977
AvaI CYCGRG 2 cut(s) 488, 1141
BalI TGGCCA 2 cut(s) 177, 294
BamHI GGATCC 1 cut(s) 736
BanI GGYRCC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 4 cut(s) 120, 123, 496, 748
BccI CCATC 1 cut(s) 782
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 3 cut(s) 224, 305, 1320
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 3 cut(s) 522, 1132, 1301
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 3 cut(s) 53, 68, 588
BfmI CTRYAG 2 cut(s) 701, 1037
BglI GCCNNNNNGGC 1 cut(s) 300
BglII AGATCT 1 cut(s) 256
BisI GCNGC 4 cut(s) 109, 112, 485, 762
BlsI GCNGC 4 cut(s) 110, 113, 486, 763
Bme1390I CCNGG 3 cut(s) 224, 305, 1320
BmeT110I CYCGRG 2 cut(s) 488, 1141
BmgT120I GGNCC 2 cut(s) 220, 1197
BmiI GGNNCC 3 cut(s) 73, 499, 738
BmrFI CCNGG 3 cut(s) 224, 305, 1320
BmsI GCATC 3 cut(s) 22, 646, 676
BpiI GAAGAC 1 cut(s) 990
BpmI CTGGAG 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 550
BsaHI GRCGYC 2 cut(s) 47, 987
BsaJI CCNNGG 6 cut(s) 172, 222, 289, 304, 469, 603
BsaWI WCCGGW 1 cut(s) 1227
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 1163, 1193
Bse1I ACTGG 4 cut(s) 295, 967, 1075, 1124
Bse3DI GCAATG 3 cut(s) 121, 1023, 1155
BseBI CCWGG 3 cut(s) 224, 305, 1320
BseDI CCNNGG 6 cut(s) 172, 222, 289, 304, 469, 603
BseGI GGATG 1 cut(s) 691
BseMI GCAATG 3 cut(s) 121, 1023, 1155
BseNI ACTGG 4 cut(s) 295, 967, 1075, 1124
BseRI GAGGAG 1 cut(s) 352
BseXI GCAGC 4 cut(s) 120, 123, 496, 748
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 9 cut(s) 177, 221, 294, 303, 430, 468, 645, 883, 1199
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 2 cut(s) 488, 1141
BsiSI CCGG 1 cut(s) 1228
BslFI GGGAC 2 cut(s) 34, 315
BsmAI GTCTC 3 cut(s) 522, 1132, 1301
BsmFI GGGAC 2 cut(s) 34, 315
BsnI GGCC 9 cut(s) 177, 221, 294, 303, 430, 468, 645, 883, 1199
BsoBI CYCGRG 2 cut(s) 488, 1141
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 256, 352, 736, 1192
Bsp19I CCATGG 2 cut(s) 172, 289
BspACI CCGC 4 cut(s) 279, 603, 605, 887
BspANI GGCC 9 cut(s) 177, 221, 294, 303, 430, 468, 645, 883, 1199
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 3 cut(s) 73, 499, 738
BspMAI CTGCAG 1 cut(s) 1041
BspPI GGATC 2 cut(s) 731, 744
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 3 cut(s) 121, 1023, 1155
BsrI ACTGG 4 cut(s) 295, 967, 1075, 1124
BssECI CCNNGG 6 cut(s) 172, 222, 289, 304, 469, 603
BssMI GATC 4 cut(s) 256, 352, 736, 1192
BssNAI GTATAC 1 cut(s) 1068
BssNI GRCGYC 2 cut(s) 47, 987
BssT1I CCWWGG 2 cut(s) 172, 289
Bst1107I GTATAC 1 cut(s) 1068
Bst2UI CCWGG 3 cut(s) 224, 305, 1320
Bst4CI ACNGT 5 cut(s) 546, 572, 772, 857, 925
Bst6I CTCTTC 3 cut(s) 990, 1017, 1259
BstACI GRCGYC 2 cut(s) 47, 987
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 891, 1239
BstDSI CCRYGG 3 cut(s) 172, 289, 603
BstF5I GGATG 1 cut(s) 691
BstFNI CGCG 1 cut(s) 605
BstKTI GATC 4 cut(s) 259, 355, 739, 1195
BstMAI GTCTC 3 cut(s) 522, 1132, 1301
BstMBI GATC 4 cut(s) 256, 352, 736, 1192
BstMWI GCNNNNNNNGC 6 cut(s) 10, 285, 300, 392, 490, 1196
BstNI CCWGG 3 cut(s) 224, 305, 1320
BstNSI RCATGY 4 cut(s) 201, 390, 1180, 1237
BstSCI CCNGG 3 cut(s) 222, 303, 1318
BstSFI CTRYAG 2 cut(s) 701, 1037
BstSNI TACGTA 1 cut(s) 550
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 4 cut(s) 120, 123, 496, 748
BstV2I GAAGAC 1 cut(s) 990
BstX2I RGATCY 2 cut(s) 256, 736
BstYI RGATCY 2 cut(s) 256, 736
BstZ17I GTATAC 1 cut(s) 1068
BsuRI GGCC 9 cut(s) 177, 221, 294, 303, 430, 468, 645, 883, 1199
BtgI CCRYGG 3 cut(s) 172, 289, 603
BtsCI GGATG 1 cut(s) 691
BtsIMutI CAGTG 1 cut(s) 960
Cac8I GCNNGC 2 cut(s) 891, 1239
Cfr13I GGNCC 2 cut(s) 220, 1197
Cfr42I CCGCGG 1 cut(s) 606
CseI GACGC 1 cut(s) 995
Csp6I GTAC 3 cut(s) 72, 547, 1146
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviQI GTAC 3 cut(s) 72, 547, 1146
DpnI GATC 4 cut(s) 258, 354, 738, 1194
DpnII GATC 4 cut(s) 256, 352, 736, 1192
DraI TTTAAA 2 cut(s) 796, 1108
DraIII CACNNNGTG 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 175, 292
Eam1104I CTCTTC 3 cut(s) 990, 1017, 1259
EarI CTCTTC 3 cut(s) 990, 1017, 1259
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 2 cut(s) 172, 289
Eco147I AGGCCT 1 cut(s) 303
Eco88I CYCGRG 2 cut(s) 488, 1141
EcoRI GAATTC 1 cut(s) 914
EcoRII CCWGG 3 cut(s) 222, 303, 1318
EcoT14I CCWWGG 2 cut(s) 172, 289
ErhI CCWWGG 2 cut(s) 172, 289
FaqI GGGAC 2 cut(s) 34, 315
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 1067
Fnu4HI GCNGC 4 cut(s) 109, 112, 485, 762
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 4 cut(s) 109, 112, 485, 762
FspBI CTAG 3 cut(s) 53, 68, 588
GluI GCNGC 4 cut(s) 109, 112, 485, 762
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 9 cut(s) 177, 221, 294, 303, 430, 468, 645, 883, 1199
HapII CCGG 1 cut(s) 1228
HgaI GACGC 1 cut(s) 995
Hin1I GRCGYC 2 cut(s) 47, 987
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 5 cut(s) 325, 359, 677, 1184, 1273
HpaII CCGG 1 cut(s) 1228
HphI GGTGA 5 cut(s) 139, 148, 263, 406, 977
Hpy166II GTNNAC 2 cut(s) 568, 1068
Hpy188I TCNGA 3 cut(s) 473, 836, 1097
Hpy188III TCNNGA 5 cut(s) 356, 521, 734, 944, 1277
Hpy8I GTNNAC 2 cut(s) 568, 1068
HpyAV CCTTC 4 cut(s) 113, 184, 628, 813
HpyCH4III ACNGT 5 cut(s) 546, 572, 772, 857, 925
HpyCH4IV ACGT 4 cut(s) 47, 180, 213, 549
HpyCH4V TGCA 7 cut(s) 13, 725, 782, 893, 1039, 1135, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 285, 300, 392, 490, 1196
HpySE526I ACGT 4 cut(s) 47, 180, 213, 549
Hsp92I GRCGYC 2 cut(s) 47, 987
KpnI GGTACC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 352
KspI CCGCGG 1 cut(s) 606
Kzo9I GATC 4 cut(s) 256, 352, 736, 1192
Lsp1109I GCAGC 4 cut(s) 120, 123, 496, 748
LweI GCATC 3 cut(s) 22, 646, 676
MaeI CTAG 3 cut(s) 53, 68, 588
MaeII ACGT 4 cut(s) 47, 180, 213, 549
MaeIII GTNAC 2 cut(s) 281, 434
MalI GATC 4 cut(s) 258, 354, 738, 1194
MboI GATC 4 cut(s) 256, 352, 736, 1192
MboII GAAGA 9 cut(s) 248, 266, 923, 995, 1007, 1034, 1276, 1296, 1299
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 2 cut(s) 256, 736
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 2 cut(s) 177, 294
MluCI AATT 6 cut(s) 57, 91, 713, 728, 914, 973
MluNI TGGCCA 2 cut(s) 177, 294
MlyI GAGTC 2 cut(s) 353, 1193
MnlI CCTC 7 cut(s) 32, 373, 373, 479, 809, 894, 951
Mox20I TGGCCA 2 cut(s) 177, 294
MscI TGGCCA 2 cut(s) 177, 294
MseI TTAA 5 cut(s) 30, 708, 795, 1107, 1248
MslI CAYNNNNRTG 1 cut(s) 588
Msp20I TGGCCA 2 cut(s) 177, 294
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 1 cut(s) 1228
MspR9I CCNGG 3 cut(s) 224, 305, 1320
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 3 cut(s) 224, 305, 1320
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 6 cut(s) 10, 285, 300, 392, 490, 1196
NcoI CCATGG 2 cut(s) 172, 289
NdeII GATC 4 cut(s) 256, 352, 736, 1192
NlaIV GGNNCC 3 cut(s) 73, 499, 738
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 4 cut(s) 201, 390, 1180, 1237
OliI CACNNNNGTG 1 cut(s) 588
PceI AGGCCT 1 cut(s) 303
PciI ACATGT 1 cut(s) 1176
PfeI GAWTC 3 cut(s) 325, 677, 1273
PkrI GCNGC 4 cut(s) 110, 113, 486, 763
PleI GAGTC 2 cut(s) 353, 1192
PpsI GAGTC 2 cut(s) 353, 1192
Ppu21I YACGTR 1 cut(s) 550
PscI ACATGT 1 cut(s) 1176
PshBI ATTAAT 1 cut(s) 708
Psp6I CCWGG 3 cut(s) 222, 303, 1318
PspGI CCWGG 3 cut(s) 222, 303, 1318
PspN4I GGNNCC 3 cut(s) 73, 499, 738
PspPI GGNCC 2 cut(s) 220, 1197
PstI CTGCAG 1 cut(s) 1041
PsuI RGATCY 2 cut(s) 256, 736
RsaI GTAC 3 cut(s) 73, 548, 1147
RsaNI GTAC 3 cut(s) 72, 547, 1146
RseI CAYNNNNRTG 1 cut(s) 588
SacII CCGCGG 1 cut(s) 606
SaqAI TTAA 5 cut(s) 30, 708, 795, 1107, 1248
SatI GCNGC 4 cut(s) 109, 112, 485, 762
Sau3AI GATC 4 cut(s) 256, 352, 736, 1192
Sau96I GGNCC 2 cut(s) 220, 1197
SchI GAGTC 2 cut(s) 353, 1193
ScrFI CCNGG 3 cut(s) 224, 305, 1320
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 3 cut(s) 22, 646, 676
SfcI CTRYAG 2 cut(s) 701, 1037
SfiI GGCCNNNNNGGCC 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 606
SgrBI CCGCGG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 588
SnaBI TACGTA 1 cut(s) 550
SpeI ACTAGT 1 cut(s) 587
Sse9I AATT 6 cut(s) 57, 91, 713, 728, 914, 973
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 4 cut(s) 279, 603, 605, 887
SspI AATATT 1 cut(s) 1092
SspMI CTAG 3 cut(s) 53, 68, 588
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 222, 303, 1318
StyI CCWWGG 2 cut(s) 172, 289
TaaI ACNGT 5 cut(s) 546, 572, 772, 857, 925
TaiI ACGT 4 cut(s) 50, 183, 216, 552
TaqI TCGA 2 cut(s) 927, 1310
TasI AATT 6 cut(s) 57, 91, 713, 728, 914, 973
TfiI GAWTC 3 cut(s) 325, 677, 1273
Tru1I TTAA 5 cut(s) 30, 708, 795, 1107, 1248
Tru9I TTAA 5 cut(s) 30, 708, 795, 1107, 1248
TscAI CASTG 1 cut(s) 967
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 4 cut(s) 108, 111, 484, 761
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 6 cut(s) 117, 132, 726, 1043, 1070, 1277
TspGWI ACGGA 1 cut(s) 966
TspRI CASTG 1 cut(s) 967
VspI ATTAAT 1 cut(s) 708
XapI RAATTY 4 cut(s) 91, 728, 914, 973
XceI RCATGY 4 cut(s) 201, 390, 1180, 1237
XcmI CCANNNNNNNNNTGG 2 cut(s) 159, 752
XmiI GTMKAC 1 cut(s) 1067
XspI CTAG 3 cut(s) 53, 68, 588
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.