Rorug06G0348600

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013356
Physical Location & Seq
Forward (+)
49878147 .. 49878707
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0348600.1

Sequence Viewer

Length: 447 bp
ATGCCTGATCTCGCACAACCATCGTATGTTAGCTCCATTCCAAGCCTCACCACAAATTCTTCTTCATTATCTTTGGCTTCAAAGCTTTTGCCAATCAAGGCTGGACAGAGTGCAGTGATACGTACATTGTTGTACCCGAATGCGACTCAAATGGTGCCTCCATATAATATCACGGTGCGTGAATTCACCAAGGCCAGTTCCCACCTCACTAACAACCTTGGCAAGTGTGGCATCAAAAGCGAAGTCGTCTTACTAGCTAACACAACCCTAGGGGCAGAGAACCGGATGACCAGTAACGTGTTGTCCGCCGATGCCAATTCCCTGTCTTACGCAAGAACAGAGCCTGAGATCTTGAGGATTGTGTATGGAACCGGCAATGAGAACCTGCCCGGCGGATTTTTTCCCAAAGGTGCCAACGGCAAAATTGCAAGGAGCCTCCTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

148

Amino Acids

15.71

Weight (kDa)

9.56

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccB1I GGYRCC 2 cut(s) 154, 410
AciI CCGC 2 cut(s) 306, 393
AcsI RAATTY 2 cut(s) 55, 182
AfaI GTAC 2 cut(s) 124, 134
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 81
AluBI AGCT 3 cut(s) 33, 85, 257
AluI AGCT 3 cut(s) 33, 85, 257
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 2 cut(s) 55, 182
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspA2I CCTAGG 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 40, 178
AvrII CCTAGG 1 cut(s) 268
BanI GGYRCC 2 cut(s) 154, 410
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 390
BfaI CTAG 2 cut(s) 254, 269
BfuAI ACCTGC 1 cut(s) 393
BglII AGATCT 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 390
BmiI GGNNCC 4 cut(s) 156, 370, 412, 434
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 2 cut(s) 240, 301
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 390
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 189, 217, 268
BsaWI WCCGGW 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 195, 291
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 3 cut(s) 189, 217, 268
BseGI GGATG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 195, 291
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 2 cut(s) 154, 410
BsiSI CCGG 3 cut(s) 283, 372, 390
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 7, 348
BspACI CCGC 2 cut(s) 306, 393
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 4 cut(s) 156, 370, 412, 434
BspMI ACCTGC 1 cut(s) 393
BspT107I GGYRCC 2 cut(s) 154, 410
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 2 cut(s) 195, 291
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 3 cut(s) 189, 217, 268
BssMI GATC 2 cut(s) 7, 348
BssT1I CCWWGG 3 cut(s) 189, 217, 268
Bst4CI ACNGT 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 2 cut(s) 10, 351
BstMBI GATC 2 cut(s) 7, 348
BstMWI GCNNNNNNNGC 2 cut(s) 228, 237
BstSCI CCNGG 1 cut(s) 388
BstSNI TACGTA 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 371
Csp6I GTAC 2 cut(s) 123, 133
CviJI RGCY 9 cut(s) 33, 45, 77, 85, 101, 194, 257, 343, 435
CviKI_1 RGCY 9 cut(s) 33, 45, 77, 85, 101, 194, 257, 343, 435
CviQI GTAC 2 cut(s) 123, 133
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 9, 350
DpnII GATC 2 cut(s) 7, 348
EciI GGCGGA 2 cut(s) 295, 408
Eco105I TACGTA 1 cut(s) 122
Eco130I CCWWGG 3 cut(s) 189, 217, 268
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 3 cut(s) 189, 217, 268
ErhI CCWWGG 3 cut(s) 189, 217, 268
FaiI YATR 4 cut(s) 27, 163, 165, 366
FokI GGATG 1 cut(s) 298
FspBI CTAG 2 cut(s) 254, 269
HaeIII GGCC 1 cut(s) 194
HapII CCGG 3 cut(s) 283, 372, 390
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 145
HpaII CCGG 3 cut(s) 283, 372, 390
HphI GGTGA 2 cut(s) 40, 178
Hpy188III TCNNGA 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 121, 297
HpyCH4V TGCA 2 cut(s) 113, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 237
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 121, 297
Kzo9I GATC 2 cut(s) 7, 348
LmnI GCTCC 2 cut(s) 38, 432
LweI GCATC 2 cut(s) 240, 301
MaeI CTAG 2 cut(s) 254, 269
MaeII ACGT 2 cut(s) 121, 297
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 9, 350
MboI GATC 2 cut(s) 7, 348
MboII GAAGA 2 cut(s) 51, 54
MflI RGATCY 1 cut(s) 348
MluCI AATT 4 cut(s) 55, 182, 316, 423
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 5 cut(s) 56, 168, 215, 348, 446
MspI CCGG 3 cut(s) 283, 372, 390
MspR9I CCNGG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 228, 237
NciI CCSGG 1 cut(s) 390
NdeII GATC 2 cut(s) 7, 348
NlaIV GGNNCC 4 cut(s) 156, 370, 412, 434
PctI GAATGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 122
PspN4I GGNNCC 4 cut(s) 156, 370, 412, 434
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 348
RsaI GTAC 2 cut(s) 124, 134
RsaNI GTAC 2 cut(s) 123, 133
Sau3AI GATC 2 cut(s) 7, 348
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 390
SetI ASST 9 cut(s) 35, 87, 124, 207, 219, 259, 300, 387, 412
SfaNI GCATC 2 cut(s) 240, 301
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SnaBI TACGTA 1 cut(s) 122
Sse9I AATT 4 cut(s) 55, 182, 316, 423
SsiI CCGC 2 cut(s) 306, 393
SspMI CTAG 2 cut(s) 254, 269
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 3 cut(s) 189, 217, 268
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 124, 300
TasI AATT 4 cut(s) 55, 182, 316, 423
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 120
XapI RAATTY 2 cut(s) 55, 182
XmaJI CCTAGG 1 cut(s) 268
XspI CTAG 2 cut(s) 254, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.