Rroxscaffold_7G00161880

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013356
Physical Location & Seq
Forward (+)
4516006 .. 4519012
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161880.1

Sequence Viewer

Length: 1299 bp
ATGATGTCAGCGTGTCGCCCTCCATTGGCGGCAACTTGGCTCGTAAAGTGGTGGCGGTGGCTGCCGGAGAAGCTCACACTCTGGCGCTCACAGGTGATGGGTATGTGTATTCATGGGGGAGAGGCATGTTTGGGCGGCTCGGAACCGGTTCGGAATCCGACGAGCTCTGTCCGGTTCGGGTCAAATTTAAACAAGAAAAGGGCATCAAATTTGCGGGAGTGGCTGCTGGTGCTTACCATAGTCTTGCTCTGTCTGATGATGGGTCCATTTGGTGTTGGGGTTACAACATCTGATGGCCAACTTGGTGTAAATGGTGAAAATTCTCTGGTACCCTGCTTGCTAGAGCGATTCCTTGAGTTGGGCTCTGGAACGAGGAGTGAAGTGCCACTACAGGTTTGTTCTGTTAAGGCTGGAGGAATGATGTCCCTAGCAATAGATAATCTCGGTACCCTTTGGATGTGGGGCAATTGTCCACCAGAAAGCAGCAGCAGTGAAGGTGGGTTCTCTCTTGTGAGCAGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACACGGTTGTGAAGGTAGCATGCGGAAATGAGCATGTAGTAGCCCTAGTCACGGCTGGAGAAACATATAAAGGTGAAGACCTTATATGCTTCTCTTGGGGTAGTAACAATCATGGGCAGTTAGGCCTTGGGGATAAAGAGAACCGGAATCGTCCTGAAATAGTAGAAGATTTTAACAAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACAGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAAAGCATGTGCTGGACGTTTGGCCTTGGAGAAAATGGGCAACTTGGGCATGGAACCACCCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAGTATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTGTTGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGGCAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTGTGTAACGGATCCAATGGGTCTAAATTTCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTCTCCCACTGTTGTTTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

432

Amino Acids

46.58

Weight (kDa)

6.13

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 97 - 416 2.3e-45 RCC1-like domain
RCC1_2 PF13540 187 - 224 1.2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 214 - 263 1.3e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 277 - 323 2.8e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 328, 446
AccB1I GGYRCC 2 cut(s) 328, 446
AciI CCGC 6 cut(s) 29, 55, 135, 214, 576, 746
AclWI GGATC 2 cut(s) 1089, 1102
AcoI YGGCCR 2 cut(s) 295, 550
AcsI RAATTY 4 cut(s) 184, 208, 319, 1109
AfaI GTAC 2 cut(s) 330, 448
AfiI CCNNNNNNNGG 5 cut(s) 25, 358, 537, 538, 604
AgeI ACCGGT 1 cut(s) 145
AgsI TTSAA 1 cut(s) 1284
AhlI ACTAGT 1 cut(s) 962
AleI CACNNNNGTG 2 cut(s) 560, 963
AluBI AGCT 4 cut(s) 73, 165, 782, 1180
AluI AGCT 4 cut(s) 73, 165, 782, 1180
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 806, 1019
AlwI GGATC 2 cut(s) 1089, 1102
AlwNI CAGNNNCTG 1 cut(s) 1084
AoxI GGCC 5 cut(s) 295, 550, 676, 841, 1261
ApeKI GCWGC 5 cut(s) 61, 223, 483, 486, 1142
ApoI RAATTY 4 cut(s) 184, 208, 319, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
AsiGI ACCGGT 1 cut(s) 145
Asp700I GAANNNNTTC 1 cut(s) 147
Asp718I GGTACC 2 cut(s) 328, 446
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 263, 1123
AsuHPI GGTGA 3 cut(s) 106, 326, 638
AvaII GGWCC 2 cut(s) 263, 1123
BalI TGGCCA 2 cut(s) 297, 552
BamHI GGATCC 1 cut(s) 1094
BanI GGYRCC 2 cut(s) 328, 446
BanII GRGCYC 2 cut(s) 167, 365
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 5 cut(s) 48, 210, 495, 498, 1129
BccI CCATC 5 cut(s) 91, 253, 287, 997, 1163
BceAI ACGGC 1 cut(s) 621
BcgI CGANNNNNNTGC 2 cut(s) 1213, 1247
BcoDI GTCTC 2 cut(s) 806, 1019
BcuI ACTAGT 1 cut(s) 962
BfaI CTAG 5 cut(s) 341, 428, 599, 963, 1035
BfmI CTRYAG 2 cut(s) 389, 978
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 7 cut(s) 30, 62, 136, 224, 484, 487, 1143
BlsI GCNGC 7 cut(s) 31, 63, 137, 225, 485, 488, 1144
Bme18I GGWCC 2 cut(s) 263, 1123
BmgT120I GGNCC 2 cut(s) 263, 1123
BmiI GGNNCC 7 cut(s) 144, 264, 330, 448, 874, 1096, 1119
BmrI ACTGGG 2 cut(s) 527, 1053
BmsI GCATC 4 cut(s) 212, 1021, 1042, 1051
BmuI ACTGGG 2 cut(s) 527, 1053
BpiI GAAGAC 1 cut(s) 636
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 2 cut(s) 432, 630
BpuEI CTTGAG 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 3 cut(s) 547, 679, 844
BsaWI WCCGGW 3 cut(s) 145, 171, 696
BsaXI ACNNNNNCTCC 2 cut(s) 719, 749
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 358, 537, 538, 604
Bse118I RCCGGY 2 cut(s) 145, 1120
Bse1I ACTGG 2 cut(s) 533, 1048
BseDI CCNNGG 3 cut(s) 547, 679, 844
BseGI GGATG 3 cut(s) 462, 1008, 1066
BseLI CCNNNNNNNGG 5 cut(s) 25, 358, 537, 538, 604
BseNI ACTGG 2 cut(s) 533, 1048
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 5 cut(s) 48, 210, 495, 498, 1129
BshFI GGCC 5 cut(s) 297, 552, 678, 843, 1263
BshNI GGYRCC 2 cut(s) 328, 446
BshTI ACCGGT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 5 cut(s) 65, 146, 172, 697, 1121
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 5 cut(s) 25, 358, 537, 538, 604
BsmAI GTCTC 2 cut(s) 806, 1019
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 5 cut(s) 297, 552, 678, 843, 1263
Bso31I GGTCTC 1 cut(s) 1019
Bsp1286I GDGCHC 2 cut(s) 167, 365
Bsp143I GATC 2 cut(s) 933, 1094
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 6 cut(s) 29, 55, 135, 214, 576, 746
BspANI GGCC 5 cut(s) 297, 552, 678, 843, 1263
BspLI GGNNCC 7 cut(s) 144, 264, 330, 448, 874, 1096, 1119
BspMAI CTGCAG 1 cut(s) 982
BspPI GGATC 2 cut(s) 1089, 1102
BspT107I GGYRCC 2 cut(s) 328, 446
BspTNI GGTCTC 1 cut(s) 1019
BsrFI RCCGGY 2 cut(s) 145, 1120
BsrI ACTGG 2 cut(s) 533, 1048
BssAI RCCGGY 2 cut(s) 145, 1120
BssECI CCNNGG 3 cut(s) 547, 679, 844
BssMI GATC 2 cut(s) 933, 1094
BssT1I CCWWGG 3 cut(s) 547, 679, 844
Bst4CI ACNGT 7 cut(s) 559, 904, 921, 947, 1153, 1238, 1251
BstAPI GCANNNNNTGC 1 cut(s) 1061
BstC8I GCNNGC 2 cut(s) 338, 574
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 3 cut(s) 462, 1008, 1066
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 936, 1097
BstMAI GTCTC 2 cut(s) 806, 1019
BstMBI GATC 2 cut(s) 933, 1094
BstMWI GCNNNNNNNGC 7 cut(s) 61, 70, 220, 229, 767, 865, 1061
BstNSI RCATGY 5 cut(s) 129, 576, 590, 765, 829
BstSFI CTRYAG 2 cut(s) 389, 978
BstV1I GCAGC 5 cut(s) 48, 210, 495, 498, 1129
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 1094
BstYI RGATCY 1 cut(s) 1094
BsuRI GGCC 5 cut(s) 297, 552, 678, 843, 1263
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 3 cut(s) 462, 1008, 1066
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 3 cut(s) 496, 540, 1247
Cac8I GCNNGC 2 cut(s) 338, 574
CaiI CAGNNNCTG 1 cut(s) 1084
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 2 cut(s) 145, 1120
Cfr13I GGNCC 2 cut(s) 263, 1123
Csp6I GTAC 2 cut(s) 329, 447
CspAI ACCGGT 1 cut(s) 145
CviQI GTAC 2 cut(s) 329, 447
DpnI GATC 2 cut(s) 935, 1096
DpnII GATC 2 cut(s) 933, 1094
DraI TTTAAA 1 cut(s) 189
EaeI YGGCCR 2 cut(s) 295, 550
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 3 cut(s) 547, 679, 844
Eco147I AGGCCT 1 cut(s) 678
Eco24I GRGCYC 2 cut(s) 167, 365
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 2 cut(s) 263, 1123
Eco53kI GAGCTC 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 165
EcoT14I CCWWGG 3 cut(s) 547, 679, 844
EcoT38I GRGCYC 2 cut(s) 167, 365
ErhI CCWWGG 3 cut(s) 547, 679, 844
FaqI GGGAC 1 cut(s) 409
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 7 cut(s) 30, 62, 136, 224, 484, 487, 1143
FokI GGATG 3 cut(s) 469, 1015, 1073
FriOI GRGCYC 2 cut(s) 167, 365
Fsp4HI GCNGC 7 cut(s) 30, 62, 136, 224, 484, 487, 1143
FspBI CTAG 5 cut(s) 341, 428, 599, 963, 1035
GlaI GCGC 1 cut(s) 86
GluI GCNGC 7 cut(s) 30, 62, 136, 224, 484, 487, 1143
GsuI CTGGAG 2 cut(s) 432, 630
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 5 cut(s) 297, 552, 678, 843, 1263
HapII CCGG 5 cut(s) 65, 146, 172, 697, 1121
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 5 cut(s) 154, 348, 700, 734, 1081
HpaII CCGG 5 cut(s) 65, 146, 172, 697, 1121
HphI GGTGA 3 cut(s) 106, 326, 638
Hpy166II GTNNAC 2 cut(s) 473, 943
Hpy188I TCNGA 7 cut(s) 142, 153, 159, 255, 292, 933, 1217
Hpy188III TCNNGA 4 cut(s) 366, 707, 896, 1115
Hpy8I GTNNAC 2 cut(s) 473, 943
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 488, 559, 1003
HpyCH4III ACNGT 7 cut(s) 559, 904, 921, 947, 1153, 1238, 1251
HpyCH4IV ACGT 1 cut(s) 836
HpyCH4V TGCA 2 cut(s) 980, 1055
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 70, 220, 229, 767, 865, 1061
HpySE526I ACGT 1 cut(s) 836
HspAI GCGC 1 cut(s) 85
KpnI GGTACC 2 cut(s) 332, 450
Kzo9I GATC 2 cut(s) 933, 1094
LmnI GCTCC 1 cut(s) 1117
Lsp1109I GCAGC 5 cut(s) 48, 210, 495, 498, 1129
LweI GCATC 4 cut(s) 212, 1021, 1042, 1051
MaeI CTAG 5 cut(s) 341, 428, 599, 963, 1035
MaeII ACGT 1 cut(s) 836
MaeIII GTNAC 4 cut(s) 280, 601, 656, 1088
MalI GATC 2 cut(s) 935, 1096
MboI GATC 2 cut(s) 933, 1094
MboII GAAGA 3 cut(s) 641, 731, 1212
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 1 cut(s) 1094
MhlI GDGCHC 2 cut(s) 167, 365
MlsI TGGCCA 2 cut(s) 297, 552
MluCI AATT 6 cut(s) 184, 208, 319, 466, 911, 1109
MluNI TGGCCA 2 cut(s) 297, 552
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 2 cut(s) 182, 551
MnlI CCTC 8 cut(s) 30, 115, 366, 407, 898, 1190, 1269, 1274
Mox20I TGGCCA 2 cut(s) 297, 552
MroXI GAANNNNTTC 1 cut(s) 147
MscI TGGCCA 2 cut(s) 297, 552
MseI TTAA 3 cut(s) 188, 405, 726
MslI CAYNNNNRTG 2 cut(s) 560, 963
Msp20I TGGCCA 2 cut(s) 297, 552
MspI CCGG 5 cut(s) 65, 146, 172, 697, 1121
MunI CAATTG 1 cut(s) 466
MwoI GCNNNNNNNGC 7 cut(s) 61, 70, 220, 229, 767, 865, 1061
NcoI CCATGG 1 cut(s) 547
NdeII GATC 2 cut(s) 933, 1094
NlaIV GGNNCC 7 cut(s) 144, 264, 330, 448, 874, 1096, 1119
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 5 cut(s) 129, 576, 590, 765, 829
OliI CACNNNNGTG 2 cut(s) 560, 963
PaeI GCATGC 1 cut(s) 576
PceI AGGCCT 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 4 cut(s) 154, 348, 700, 1081
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 7 cut(s) 31, 63, 137, 225, 485, 488, 1144
PleI GAGTC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 728
Psp124BI GAGCTC 1 cut(s) 167
PspN4I GGNNCC 7 cut(s) 144, 264, 330, 448, 874, 1096, 1119
PspPI GGNCC 2 cut(s) 263, 1123
PstI CTGCAG 1 cut(s) 982
PstNI CAGNNNCTG 1 cut(s) 1084
PsuI RGATCY 1 cut(s) 1094
RsaI GTAC 2 cut(s) 330, 448
RsaNI GTAC 2 cut(s) 329, 447
RseI CAYNNNNRTG 2 cut(s) 560, 963
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 188, 405, 726
SatI GCNGC 7 cut(s) 30, 62, 136, 224, 484, 487, 1143
Sau3AI GATC 2 cut(s) 933, 1094
Sau96I GGNCC 2 cut(s) 263, 1123
SchI GAGTC 1 cut(s) 728
SduI GDGCHC 2 cut(s) 167, 365
SfaNI GCATC 4 cut(s) 212, 1021, 1042, 1051
SfcI CTRYAG 2 cut(s) 389, 978
SinI GGWCC 2 cut(s) 263, 1123
SmiMI CAYNNNNRTG 2 cut(s) 560, 963
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SpeI ACTAGT 1 cut(s) 962
SphI GCATGC 1 cut(s) 576
Sse9I AATT 6 cut(s) 184, 208, 319, 466, 911, 1109
SseBI AGGCCT 1 cut(s) 678
SsiI CCGC 6 cut(s) 29, 55, 135, 214, 576, 746
SspMI CTAG 5 cut(s) 341, 428, 599, 963, 1035
SstI GAGCTC 1 cut(s) 167
StuI AGGCCT 1 cut(s) 678
StyI CCWWGG 3 cut(s) 547, 679, 844
TaaI ACNGT 7 cut(s) 559, 904, 921, 947, 1153, 1238, 1251
TaiI ACGT 1 cut(s) 839
TaqI TCGA 1 cut(s) 1233
TaqII GACCGA 1 cut(s) 1007
TasI AATT 6 cut(s) 184, 208, 319, 466, 911, 1109
TauI GCSGC 2 cut(s) 32, 138
TfiI GAWTC 4 cut(s) 154, 348, 700, 1081
Tru1I TTAA 3 cut(s) 188, 405, 726
Tru9I TTAA 3 cut(s) 188, 405, 726
TscAI CASTG 3 cut(s) 496, 540, 1254
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 5 cut(s) 61, 223, 483, 486, 1142
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 101, 768, 963
TspGWI ACGGA 1 cut(s) 1107
TspRI CASTG 3 cut(s) 496, 540, 1254
VpaK11BI GGWCC 2 cut(s) 263, 1123
XapI RAATTY 4 cut(s) 184, 208, 319, 1109
XceI RCATGY 5 cut(s) 129, 576, 590, 765, 829
XcmI CCANNNNNNNNNTGG 2 cut(s) 534, 1133
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 5 cut(s) 341, 428, 599, 963, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.