RchiOBHm_Chr6g0306311

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013356
Physical Location & Seq
Reverse (-)
65040184 .. 65041879
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27533

Sequence Viewer

Length: 1269 bp
ATGATGTCGCTAGCAATAGATAATCTCGGTACCCTTTGGATGTGGGGCAATTGTCCACTAGAAAGCAGCAGCAGTGAAGGTGGTTTCTCTCTTGTGAGCAGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACACGGTTGTGAAGGTAGCATGCGGAAATGAGCATGTGGTAGCCCTAGTCACGGCTGGAGAAACGTATAAAGGTGAAGATCTTATATGCTTCTCTTGGGGTAGTAACAATCACGGGCAGTTAGGCCTCGGGGATAAAGAGAACCGGAATCGTCCTGAAATAGTAGAAGATTTTAACGAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACGGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAAAGCATGTGCTGGACGTTTGGCCTTGGAGAGAATGGGCAACTTGGGCATGGAACCACCCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAATATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTATTGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTGTGTAACGGATCCAATGGGTCTAAATTTCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTTCTCCCACTGTTGTGTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATGCTGTTGGGGAGGGAGACAGAATTGCGGAAGAGAATTCTAAAGGAGTCACCAAAACAGAAAAAGCCTTGTCTTCAGCAATTGAAGAAACGAAAATTCTTCAATCAAAACTCGCAGTGATGGAACGATATGCTGGCATACTTCATGGTTCAATATTTGGAAAACCCTTGGAAGAGCAGGATATTCCGATCTCCTTGCAGAACTCAGGTATTCATGACATTGGAAAGGAATGGGACAGAATGCTAGAGTCAGCAGATCCTGCGAAGCTCGTAAGGTTGGAAAAGTTCTATCAAAAAATGCTTGAAGGTGTTAAAGAAAAGCTGTTGAAGAAAAGGATTCAGGAGCTAGTTAAAGAGTGTCTCAGTTCTACTATAAACAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

422

Amino Acids

46.0

Weight (kDa)

5.09

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 2 - 285 2.8e-43 RCC1-like domain
RCC1_2 PF13540 48 - 85 1.2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 75 - 124 1.5e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 138 - 184 3.6e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AciI CCGC 3 cut(s) 159, 329, 911
AclWI GGATC 3 cut(s) 672, 685, 1133
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 692, 919, 978
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 3 cut(s) 120, 121, 187
AgsI TTSAA 6 cut(s) 868, 968, 986, 1035, 1187, 1210
AhlI ACTAGT 1 cut(s) 545
AleI CACNNNNGTG 2 cut(s) 143, 836
AluBI AGCT 4 cut(s) 763, 1150, 1204, 1228
AluI AGCT 4 cut(s) 763, 1150, 1204, 1228
Alw26I GTCTC 4 cut(s) 389, 602, 894, 1247
AlwI GGATC 3 cut(s) 672, 685, 1133
AlwNI CAGNNNCTG 2 cut(s) 667, 1142
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 133, 259, 424, 845
ApeKI GCWGC 3 cut(s) 66, 69, 725
ApoI RAATTY 3 cut(s) 692, 919, 978
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp718I GGTACC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 2 cut(s) 221, 925
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 706
BalI TGGCCA 1 cut(s) 135
BamHI GGATCC 1 cut(s) 677
BanI GGYRCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 948
BbvI GCAGC 3 cut(s) 78, 81, 712
BccI CCATC 3 cut(s) 580, 746, 997
BceAI ACGGC 2 cut(s) 204, 378
BcgI CGANNNNNNTGC 4 cut(s) 796, 830, 1060, 1094
BcoDI GTCTC 4 cut(s) 389, 602, 894, 1247
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 7 cut(s) 11, 59, 182, 546, 618, 1127, 1229
BfmI CTRYAG 1 cut(s) 561
BglII AGATCT 1 cut(s) 214
BisI GCNGC 3 cut(s) 67, 70, 726
BlsI GCNGC 3 cut(s) 68, 71, 727
Bme18I GGWCC 1 cut(s) 706
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 4 cut(s) 31, 457, 679, 702
BmrI ACTGGG 2 cut(s) 110, 636
BmsI GCATC 3 cut(s) 604, 625, 634
BmtI GCTAGC 1 cut(s) 14
BmuI ACTGGG 2 cut(s) 110, 636
BpiI GAAGAC 1 cut(s) 948
BpmI CTGGAG 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 4 cut(s) 130, 262, 427, 1050
BsaWI WCCGGW 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 121, 187
Bse118I RCCGGY 1 cut(s) 703
Bse1I ACTGG 2 cut(s) 116, 631
BseDI CCNNGG 4 cut(s) 130, 262, 427, 1050
BseGI GGATG 3 cut(s) 45, 591, 649
BseLI CCNNNNNNNGG 3 cut(s) 120, 121, 187
BseMII CTCAG 2 cut(s) 1101, 1258
BseNI ACTGG 2 cut(s) 116, 631
BseXI GCAGC 3 cut(s) 78, 81, 712
BshFI GGCC 4 cut(s) 135, 261, 426, 847
BshNI GGYRCC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 280, 704
BslFI GGGAC 2 cut(s) 643, 1130
BslI CCNNNNNNNGG 3 cut(s) 120, 121, 187
BsmAI GTCTC 4 cut(s) 389, 602, 894, 1247
BsmFI GGGAC 2 cut(s) 643, 1130
BsmI GAATGC 1 cut(s) 1128
BsnI GGCC 4 cut(s) 135, 261, 426, 847
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 5 cut(s) 214, 516, 677, 1071, 1138
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 3 cut(s) 159, 329, 911
BspANI GGCC 4 cut(s) 135, 261, 426, 847
BspCNI CTCAG 2 cut(s) 1100, 1257
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 4 cut(s) 31, 457, 679, 702
BspMAI CTGCAG 1 cut(s) 565
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 3 cut(s) 672, 685, 1133
BspQI GCTCTTC 1 cut(s) 1050
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 703
BsrI ACTGG 2 cut(s) 116, 631
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 4 cut(s) 130, 262, 427, 1050
BssMI GATC 5 cut(s) 214, 516, 677, 1071, 1138
BssT1I CCWWGG 3 cut(s) 130, 427, 1050
Bst4CI ACNGT 6 cut(s) 142, 487, 530, 736, 821, 835
Bst6I CTCTTC 2 cut(s) 909, 1050
BstAPI GCANNNNNTGC 2 cut(s) 644, 1142
BstC8I GCNNGC 3 cut(s) 12, 157, 1018
BstDEI CTNAG 2 cut(s) 1087, 1244
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 3 cut(s) 45, 591, 649
BstKTI GATC 5 cut(s) 217, 519, 680, 1074, 1141
BstMAI GTCTC 4 cut(s) 389, 602, 894, 1247
BstMBI GATC 5 cut(s) 214, 516, 677, 1071, 1138
BstMWI GCNNNNNNNGC 4 cut(s) 350, 448, 644, 1142
BstNSI RCATGY 4 cut(s) 159, 173, 348, 412
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 78, 81, 712
BstV2I GAAGAC 1 cut(s) 948
BstX2I RGATCY 3 cut(s) 214, 677, 1138
BstYI RGATCY 3 cut(s) 214, 677, 1138
BsuRI GGCC 4 cut(s) 135, 261, 426, 847
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 3 cut(s) 45, 591, 649
BtsI GCAGTG 2 cut(s) 79, 1005
BtsIMutI CAGTG 4 cut(s) 79, 123, 831, 1005
Cac8I GCNNGC 3 cut(s) 12, 157, 1018
CaiI CAGNNNCTG 2 cut(s) 667, 1142
CciI TCATGA 1 cut(s) 1096
Cfr10I RCCGGY 1 cut(s) 703
Cfr13I GGNCC 1 cut(s) 706
Csp6I GTAC 1 cut(s) 30
CviAII CATG 9 cut(s) 131, 156, 170, 345, 409, 452, 579, 1028, 1097
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 2 cut(s) 1087, 1244
DpnI GATC 5 cut(s) 216, 518, 679, 1073, 1140
DpnII GATC 5 cut(s) 214, 516, 677, 1071, 1138
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 909, 1050
EarI CTCTTC 2 cut(s) 909, 1050
Eco130I CCWWGG 3 cut(s) 130, 427, 1050
Eco147I AGGCCT 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 942
Eco88I CYCGRG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 919
EcoT14I CCWWGG 3 cut(s) 130, 427, 1050
ErhI CCWWGG 3 cut(s) 130, 427, 1050
FaeI CATG 9 cut(s) 134, 159, 173, 348, 412, 455, 582, 1031, 1100
FaqI GGGAC 2 cut(s) 643, 1130
FatI CATG 9 cut(s) 130, 155, 169, 344, 408, 451, 578, 1027, 1096
Fnu4HI GCNGC 3 cut(s) 67, 70, 726
FokI GGATG 3 cut(s) 52, 598, 656
Fsp4HI GCNGC 3 cut(s) 67, 70, 726
FspBI CTAG 7 cut(s) 11, 59, 182, 546, 618, 1127, 1229
GluI GCNGC 3 cut(s) 67, 70, 726
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 4 cut(s) 135, 261, 426, 847
HapII CCGG 2 cut(s) 280, 704
Hin1II CATG 9 cut(s) 134, 159, 173, 348, 412, 455, 582, 1031, 1100
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 6 cut(s) 283, 317, 664, 930, 1130, 1219
HpaII CCGG 2 cut(s) 280, 704
HphI GGTGA 2 cut(s) 221, 925
Hpy166II GTNNAC 2 cut(s) 56, 526
Hpy188I TCNGA 3 cut(s) 516, 800, 1071
Hpy188III TCNNGA 5 cut(s) 290, 479, 698, 1097, 1223
Hpy8I GTNNAC 2 cut(s) 56, 526
HpyAV CCTTC 4 cut(s) 71, 142, 586, 1181
HpyCH4III ACNGT 6 cut(s) 142, 487, 530, 736, 821, 835
HpyCH4IV ACGT 2 cut(s) 200, 419
HpyCH4V TGCA 3 cut(s) 563, 638, 1081
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 448, 644, 1142
HpyF3I CTNAG 2 cut(s) 1087, 1244
HpySE526I ACGT 2 cut(s) 200, 419
Hsp92II CATG 9 cut(s) 134, 159, 173, 348, 412, 455, 582, 1031, 1100
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 214, 516, 677, 1071, 1138
LguI GCTCTTC 1 cut(s) 1050
LmnI GCTCC 2 cut(s) 700, 1225
Lsp1109I GCAGC 3 cut(s) 78, 81, 712
LweI GCATC 3 cut(s) 604, 625, 634
MaeI CTAG 7 cut(s) 11, 59, 182, 546, 618, 1127, 1229
MaeII ACGT 2 cut(s) 200, 419
MaeIII GTNAC 4 cut(s) 184, 239, 671, 931
MalI GATC 5 cut(s) 216, 518, 679, 1073, 1140
MboI GATC 5 cut(s) 214, 516, 677, 1071, 1138
MfeI CAATTG 2 cut(s) 49, 963
MflI RGATCY 3 cut(s) 214, 677, 1138
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 7 cut(s) 49, 494, 692, 906, 919, 963, 978
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 3 cut(s) 311, 939, 1139
MmeI TCCRAC 2 cut(s) 134, 1140
MnlI CCTC 7 cut(s) 272, 307, 481, 773, 853, 858, 889
Mox20I TGGCCA 1 cut(s) 135
MscI TGGCCA 1 cut(s) 135
MseI TTAA 3 cut(s) 309, 1194, 1233
MslI CAYNNNNRTG 2 cut(s) 143, 836
Msp20I TGGCCA 1 cut(s) 135
MspI CCGG 2 cut(s) 280, 704
MunI CAATTG 2 cut(s) 49, 963
Mva1269I GAATGC 1 cut(s) 1128
MwoI GCNNNNNNNGC 4 cut(s) 350, 448, 644, 1142
NcoI CCATGG 1 cut(s) 130
NdeII GATC 5 cut(s) 214, 516, 677, 1071, 1138
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 9 cut(s) 134, 159, 173, 348, 412, 455, 582, 1031, 1100
NlaIV GGNNCC 4 cut(s) 31, 457, 679, 702
NmuCI GTSAC 2 cut(s) 184, 931
NspI RCATGY 4 cut(s) 159, 173, 348, 412
OliI CACNNNNGTG 2 cut(s) 143, 836
PaeI GCATGC 1 cut(s) 159
PagI TCATGA 1 cut(s) 1096
PceI AGGCCT 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 1050
PctI GAATGC 1 cut(s) 1128
PfeI GAWTC 3 cut(s) 283, 664, 1219
PkrI GCNGC 3 cut(s) 68, 71, 727
PleI GAGTC 3 cut(s) 311, 938, 1138
PpsI GAGTC 3 cut(s) 311, 938, 1138
PspN4I GGNNCC 4 cut(s) 31, 457, 679, 702
PspPI GGNCC 1 cut(s) 706
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 2 cut(s) 667, 1142
PsuI RGATCY 3 cut(s) 214, 677, 1138
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 143, 836
SapI GCTCTTC 1 cut(s) 1050
SaqAI TTAA 3 cut(s) 309, 1194, 1233
SatI GCNGC 3 cut(s) 67, 70, 726
Sau3AI GATC 5 cut(s) 214, 516, 677, 1071, 1138
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 3 cut(s) 311, 939, 1139
SfaNI GCATC 3 cut(s) 604, 625, 634
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 2 cut(s) 143, 836
SpeI ACTAGT 1 cut(s) 545
SphI GCATGC 1 cut(s) 159
Sse9I AATT 7 cut(s) 49, 494, 692, 906, 919, 963, 978
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 3 cut(s) 159, 329, 911
SspI AATATT 1 cut(s) 1038
SspMI CTAG 7 cut(s) 11, 59, 182, 546, 618, 1127, 1229
StuI AGGCCT 1 cut(s) 261
StyI CCWWGG 3 cut(s) 130, 427, 1050
TaaI ACNGT 6 cut(s) 142, 487, 530, 736, 821, 835
TaiI ACGT 2 cut(s) 203, 422
TaqI TCGA 1 cut(s) 816
TaqII GACCGA 1 cut(s) 590
TasI AATT 7 cut(s) 49, 494, 692, 906, 919, 963, 978
TfiI GAWTC 3 cut(s) 283, 664, 1219
Tru1I TTAA 3 cut(s) 309, 1194, 1233
Tru9I TTAA 3 cut(s) 309, 1194, 1233
TscAI CASTG 4 cut(s) 79, 123, 838, 1005
TseFI GTSAC 2 cut(s) 184, 931
TseI GCWGC 3 cut(s) 66, 69, 725
Tsp45I GTSAC 2 cut(s) 184, 931
TspDTI ATGAA 4 cut(s) 351, 546, 1016, 1085
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 4 cut(s) 79, 123, 838, 1005
VpaK11BI GGWCC 1 cut(s) 706
XapI RAATTY 3 cut(s) 692, 919, 978
XceI RCATGY 4 cut(s) 159, 173, 348, 412
XcmI CCANNNNNNNNNTGG 2 cut(s) 117, 716
XspI CTAG 7 cut(s) 11, 59, 182, 546, 618, 1127, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.