Rw6G040180

ultraviolet-B receptor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
64034615 .. 64037287
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040180.1

Sequence Viewer

Length: 1635 bp
ATGGAGGAGAGCGATGATGTCAGCGTGTCGCCCTCCAGTGGCGGCAACTTGGCTCGTAAAGTGGTGGCGGTGGCTGCCGGAGAAGCTCACACTCTGGCGCTCACAGGTGATGGGTATGTGTATTCATGGGGGAGAGGCATGTTTGGGCGGCTCGGAACCGGTTCGGAATCCGACGAGCTCTGTCCGGTTCGGGTCAAATTTAAACCAGAAAAGGGGCTCAAATTTGTGGGAGTGGCTGCTGGTGCTTACCATAGTCTTGCTCTGGCTGAAAACTCTCTAGTACCCTGCTTGCTAGAGCGATTCCTTGAGTTGGGCTCTGGAACGAGGAGTGAAGTGCCACTACAGGTTTGTTCTGTTAAGGCTGGAGGAATGATGTCACTAGCAATAGATAATCTCAGTACCCTTTGGATGTGGGGCAATTGTCCACTAGAAAGCAGCAGCAGTGAAGGTGGGTTCTCTCTTGTGAGCAGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACACGGTTGTGAAGGTAGCATGCGGAAATGAGCATGTGGTAGCCCTAGTCACGGCTGGAGAAACGTATAAAGGTGAAGATCTTATATGCTTCTCTTGGGGTAGTAACAATCACGGGCAGTTAGGCCTCGGGGATAAAGAGAACCGGAATCGTCCTGAAATAGTAGAAGATTTTAACGAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACGGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAAAGCATGTGCTGGACGTTTGGCCTTGGAGAGAATGGGCAACTTGGGCATGGAACCACCCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAATATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTATTGTTTCATCAGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTGTGTAACGGATCCAATGGGTCTAAATTTCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTTCTCCCACTGTTGTGTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATGCTGTTGGGGAGGGAGACAGAATTGCGGAAGAGAATTCTAGAGTCACCAAAACAGAAAAAGCCTTGTCTTCAGCAATTGAAGAAACGAAACTTCTTCAATCAAAACTCGCAGTGATGGAACGATATGCTGGCATACTTCATGGTTCAATATTTGGAAAACCCTTGGAAGAGCAGGATATTCCGATCTCCTTGCAGAACTCAGGTATTCATGACATTGGAAAGGAATGGGACAGAATGCTAGAGTCAGCAGATCCTGCGAAGCTCGTAAGGTTGGAAAAGTTCTATCAAAAAATGCTTGAAGGTGTTAAAGAAAAGCTGTTGAAGAAAAGGATTCAGGAGCTAGTTAAAGAGTGTCTCAGTTCTACTATAAACAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

58.74

Weight (kDa)

5.18

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 13 - 92 1e-16 RCC1-like domain
RCC1_2 PF13540 21 - 46 2.4e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 37 - 88 2.3e-15 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 111 - 408 1.6e-44 RCC1-like domain
RCC1_2 PF13540 171 - 208 1.6e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 198 - 247 2.1e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 261 - 307 5e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013356)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 42, 68, 148, 528, 698, 1280
AclWI GGATC 3 cut(s) 1041, 1054, 1499
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 4 cut(s) 197, 221, 1061, 1288
AcuI CTGAAG 1 cut(s) 1308
AfaI GTAC 2 cut(s) 282, 400
AfiI CCNNNNNNNGG 6 cut(s) 38, 212, 310, 489, 490, 556
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 6 cut(s) 1237, 1334, 1352, 1401, 1553, 1576
AhlI ACTAGT 1 cut(s) 914
AleI CACNNNNGTG 2 cut(s) 512, 1205
AluBI AGCT 6 cut(s) 86, 178, 1132, 1516, 1570, 1594
AluI AGCT 6 cut(s) 86, 178, 1132, 1516, 1570, 1594
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 4 cut(s) 758, 971, 1263, 1613
AlwI GGATC 3 cut(s) 1041, 1054, 1499
AlwNI CAGNNNCTG 2 cut(s) 1036, 1508
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 4 cut(s) 502, 628, 793, 1214
ApeKI GCWGC 5 cut(s) 74, 236, 435, 438, 1094
ApoI RAATTY 4 cut(s) 197, 221, 1061, 1288
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
AsiGI ACCGGT 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 1075
AsuHPI GGTGA 3 cut(s) 119, 590, 1291
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 1075
BalI TGGCCA 1 cut(s) 504
BamHI GGATCC 1 cut(s) 1046
BanII GRGCYC 3 cut(s) 180, 219, 317
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
BbsI GAAGAC 1 cut(s) 1314
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 5 cut(s) 61, 223, 447, 450, 1081
BccI CCATC 4 cut(s) 104, 949, 1115, 1363
BceAI ACGGC 2 cut(s) 573, 747
BcgI CGANNNNNNTGC 4 cut(s) 1165, 1199, 1426, 1460
BcoDI GTCTC 4 cut(s) 758, 971, 1263, 1613
BcuI ACTAGT 1 cut(s) 914
BfmI CTRYAG 1 cut(s) 341
BfoI RGCGCY 1 cut(s) 101
BglII AGATCT 1 cut(s) 583
BisI GCNGC 7 cut(s) 43, 75, 149, 237, 436, 439, 1095
BlsI GCNGC 7 cut(s) 44, 76, 150, 238, 437, 440, 1096
Bme18I GGWCC 1 cut(s) 1075
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 1075
BmiI GGNNCC 4 cut(s) 157, 826, 1048, 1071
BmrI ACTGGG 2 cut(s) 479, 1005
BmsI GCATC 3 cut(s) 973, 994, 1003
BmuI ACTGGG 2 cut(s) 479, 1005
BpiI GAAGAC 1 cut(s) 1314
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 3 cut(s) 19, 384, 582
BpuEI CTTGAG 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 4 cut(s) 499, 631, 796, 1416
BsaWI WCCGGW 3 cut(s) 158, 184, 648
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 6 cut(s) 38, 212, 310, 489, 490, 556
Bse118I RCCGGY 2 cut(s) 158, 1072
Bse1I ACTGG 3 cut(s) 36, 485, 1000
BseDI CCNNGG 4 cut(s) 499, 631, 796, 1416
BseGI GGATG 3 cut(s) 414, 960, 1018
BseLI CCNNNNNNNGG 6 cut(s) 38, 212, 310, 489, 490, 556
BseMII CTCAG 3 cut(s) 409, 1467, 1624
BseNI ACTGG 3 cut(s) 36, 485, 1000
BseRI GAGGAG 2 cut(s) 20, 340
BseXI GCAGC 5 cut(s) 61, 223, 447, 450, 1081
BshFI GGCC 4 cut(s) 504, 630, 795, 1216
BshTI ACCGGT 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 5 cut(s) 78, 159, 185, 649, 1073
BslFI GGGAC 2 cut(s) 1012, 1496
BslI CCNNNNNNNGG 6 cut(s) 38, 212, 310, 489, 490, 556
BsmAI GTCTC 4 cut(s) 758, 971, 1263, 1613
BsmFI GGGAC 2 cut(s) 1012, 1496
BsmI GAATGC 1 cut(s) 1494
BsnI GGCC 4 cut(s) 504, 630, 795, 1216
Bso31I GGTCTC 1 cut(s) 971
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 3 cut(s) 180, 219, 317
Bsp143I GATC 5 cut(s) 583, 885, 1046, 1437, 1504
Bsp19I CCATGG 1 cut(s) 499
BspACI CCGC 6 cut(s) 42, 68, 148, 528, 698, 1280
BspANI GGCC 4 cut(s) 504, 630, 795, 1216
BspCNI CTCAG 3 cut(s) 408, 1466, 1623
BspHI TCATGA 1 cut(s) 1462
BspLI GGNNCC 4 cut(s) 157, 826, 1048, 1071
BspPI GGATC 3 cut(s) 1041, 1054, 1499
BspQI GCTCTTC 1 cut(s) 1416
BspTNI GGTCTC 1 cut(s) 971
BsrFI RCCGGY 2 cut(s) 158, 1072
BsrI ACTGG 3 cut(s) 36, 485, 1000
BssAI RCCGGY 2 cut(s) 158, 1072
BssECI CCNNGG 4 cut(s) 499, 631, 796, 1416
BssMI GATC 5 cut(s) 583, 885, 1046, 1437, 1504
BssT1I CCWWGG 3 cut(s) 499, 796, 1416
Bst4CI ACNGT 6 cut(s) 511, 856, 899, 1105, 1190, 1204
Bst6I CTCTTC 2 cut(s) 1278, 1416
BstAPI GCANNNNNTGC 2 cut(s) 1013, 1508
BstC8I GCNNGC 3 cut(s) 290, 526, 1384
BstDEI CTNAG 3 cut(s) 395, 1453, 1610
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 3 cut(s) 414, 960, 1018
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 5 cut(s) 586, 888, 1049, 1440, 1507
BstMAI GTCTC 4 cut(s) 758, 971, 1263, 1613
BstMBI GATC 5 cut(s) 583, 885, 1046, 1437, 1504
BstMWI GCNNNNNNNGC 7 cut(s) 74, 83, 242, 719, 817, 1013, 1508
BstNSI RCATGY 5 cut(s) 142, 528, 542, 717, 781
BstSFI CTRYAG 1 cut(s) 341
BstV1I GCAGC 5 cut(s) 61, 223, 447, 450, 1081
BstV2I GAAGAC 1 cut(s) 1314
BstX2I RGATCY 3 cut(s) 583, 1046, 1504
BstYI RGATCY 3 cut(s) 583, 1046, 1504
BsuRI GGCC 4 cut(s) 504, 630, 795, 1216
BtgI CCRYGG 1 cut(s) 499
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 3 cut(s) 414, 960, 1018
BtsI GCAGTG 2 cut(s) 448, 1371
BtsIMutI CAGTG 5 cut(s) 43, 448, 492, 1200, 1371
Cac8I GCNNGC 3 cut(s) 290, 526, 1384
CaiI CAGNNNCTG 2 cut(s) 1036, 1508
CciI TCATGA 1 cut(s) 1462
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 2 cut(s) 158, 1072
Cfr13I GGNCC 1 cut(s) 1075
Csp6I GTAC 2 cut(s) 281, 399
CspAI ACCGGT 1 cut(s) 158
CviQI GTAC 2 cut(s) 281, 399
DdeI CTNAG 3 cut(s) 395, 1453, 1610
DpnI GATC 5 cut(s) 585, 887, 1048, 1439, 1506
DpnII GATC 5 cut(s) 583, 885, 1046, 1437, 1504
DraI TTTAAA 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 1278, 1416
EarI CTCTTC 2 cut(s) 1278, 1416
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 499, 796, 1416
Eco147I AGGCCT 1 cut(s) 630
Eco24I GRGCYC 3 cut(s) 180, 219, 317
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 1 cut(s) 1075
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 1308
Eco88I CYCGRG 1 cut(s) 632
EcoICRI GAGCTC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 1288
EcoT14I CCWWGG 3 cut(s) 499, 796, 1416
EcoT38I GRGCYC 3 cut(s) 180, 219, 317
ErhI CCWWGG 3 cut(s) 499, 796, 1416
FaqI GGGAC 2 cut(s) 1012, 1496
Fnu4HI GCNGC 7 cut(s) 43, 75, 149, 237, 436, 439, 1095
FokI GGATG 3 cut(s) 421, 967, 1025
FriOI GRGCYC 3 cut(s) 180, 219, 317
Fsp4HI GCNGC 7 cut(s) 43, 75, 149, 237, 436, 439, 1095
GlaI GCGC 1 cut(s) 99
GluI GCNGC 7 cut(s) 43, 75, 149, 237, 436, 439, 1095
GsuI CTGGAG 3 cut(s) 19, 384, 582
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 4 cut(s) 504, 630, 795, 1216
HapII CCGG 5 cut(s) 78, 159, 185, 649, 1073
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 895
HindII GTYRAC 1 cut(s) 895
HindIII AAGCTT 1 cut(s) 1130
HinfI GANTC 8 cut(s) 167, 300, 652, 686, 1033, 1296, 1496, 1585
HpaII CCGG 5 cut(s) 78, 159, 185, 649, 1073
HphI GGTGA 3 cut(s) 119, 590, 1291
Hpy166II GTNNAC 2 cut(s) 425, 895
Hpy188I TCNGA 6 cut(s) 155, 166, 172, 885, 1169, 1437
Hpy188III TCNNGA 7 cut(s) 318, 659, 848, 1067, 1293, 1463, 1589
Hpy8I GTNNAC 2 cut(s) 425, 895
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 440, 511, 955, 1547
HpyCH4III ACNGT 6 cut(s) 511, 856, 899, 1105, 1190, 1204
HpyCH4IV ACGT 2 cut(s) 569, 788
HpyCH4V TGCA 2 cut(s) 1007, 1447
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 83, 242, 719, 817, 1013, 1508
HpyF3I CTNAG 3 cut(s) 395, 1453, 1610
HpySE526I ACGT 2 cut(s) 569, 788
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 5 cut(s) 583, 885, 1046, 1437, 1504
LguI GCTCTTC 1 cut(s) 1416
LmnI GCTCC 2 cut(s) 1069, 1591
Lsp1109I GCAGC 5 cut(s) 61, 223, 447, 450, 1081
LweI GCATC 3 cut(s) 973, 994, 1003
MaeII ACGT 2 cut(s) 569, 788
MaeIII GTNAC 5 cut(s) 375, 553, 608, 1040, 1297
MalI GATC 5 cut(s) 585, 887, 1048, 1439, 1506
MboI GATC 5 cut(s) 583, 885, 1046, 1437, 1504
MfeI CAATTG 2 cut(s) 418, 1329
MflI RGATCY 3 cut(s) 583, 1046, 1504
MhlI GDGCHC 3 cut(s) 180, 219, 317
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 8 cut(s) 197, 221, 418, 863, 1061, 1275, 1288, 1329
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 3 cut(s) 680, 1305, 1505
MmeI TCCRAC 3 cut(s) 195, 503, 1506
Mox20I TGGCCA 1 cut(s) 504
MroXI GAANNNNTTC 1 cut(s) 160
MscI TGGCCA 1 cut(s) 504
MseI TTAA 5 cut(s) 201, 357, 678, 1560, 1599
MslI CAYNNNNRTG 2 cut(s) 512, 1205
Msp20I TGGCCA 1 cut(s) 504
MspI CCGG 5 cut(s) 78, 159, 185, 649, 1073
MunI CAATTG 2 cut(s) 418, 1329
Mva1269I GAATGC 1 cut(s) 1494
MwoI GCNNNNNNNGC 7 cut(s) 74, 83, 242, 719, 817, 1013, 1508
NcoI CCATGG 1 cut(s) 499
NdeII GATC 5 cut(s) 583, 885, 1046, 1437, 1504
NlaIV GGNNCC 4 cut(s) 157, 826, 1048, 1071
NmuCI GTSAC 3 cut(s) 375, 553, 1297
NspI RCATGY 5 cut(s) 142, 528, 542, 717, 781
OliI CACNNNNGTG 2 cut(s) 512, 1205
PaeI GCATGC 1 cut(s) 528
PagI TCATGA 1 cut(s) 1462
PceI AGGCCT 1 cut(s) 630
PciSI GCTCTTC 1 cut(s) 1416
PctI GAATGC 1 cut(s) 1494
PdmI GAANNNNTTC 1 cut(s) 160
PfeI GAWTC 5 cut(s) 167, 300, 652, 1033, 1585
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 7 cut(s) 44, 76, 150, 238, 437, 440, 1096
PleI GAGTC 3 cut(s) 680, 1304, 1504
PpsI GAGTC 3 cut(s) 680, 1304, 1504
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 4 cut(s) 157, 826, 1048, 1071
PspPI GGNCC 1 cut(s) 1075
PstNI CAGNNNCTG 2 cut(s) 1036, 1508
PsuI RGATCY 3 cut(s) 583, 1046, 1504
RsaI GTAC 2 cut(s) 282, 400
RsaNI GTAC 2 cut(s) 281, 399
RseI CAYNNNNRTG 2 cut(s) 512, 1205
SacI GAGCTC 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 1416
SaqAI TTAA 5 cut(s) 201, 357, 678, 1560, 1599
SatI GCNGC 7 cut(s) 43, 75, 149, 237, 436, 439, 1095
Sau3AI GATC 5 cut(s) 583, 885, 1046, 1437, 1504
Sau96I GGNCC 1 cut(s) 1075
SchI GAGTC 3 cut(s) 680, 1305, 1505
SduI GDGCHC 3 cut(s) 180, 219, 317
SfaNI GCATC 3 cut(s) 973, 994, 1003
SfcI CTRYAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 1075
SmiMI CAYNNNNRTG 2 cut(s) 512, 1205
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SpeI ACTAGT 1 cut(s) 914
SphI GCATGC 1 cut(s) 528
Sse9I AATT 8 cut(s) 197, 221, 418, 863, 1061, 1275, 1288, 1329
SseBI AGGCCT 1 cut(s) 630
SsiI CCGC 6 cut(s) 42, 68, 148, 528, 698, 1280
SspI AATATT 1 cut(s) 1404
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 630
StyI CCWWGG 3 cut(s) 499, 796, 1416
TaaI ACNGT 6 cut(s) 511, 856, 899, 1105, 1190, 1204
TaiI ACGT 2 cut(s) 572, 791
TaqI TCGA 1 cut(s) 1185
TaqII GACCGA 1 cut(s) 959
TasI AATT 8 cut(s) 197, 221, 418, 863, 1061, 1275, 1288, 1329
TauI GCSGC 2 cut(s) 45, 151
TfiI GAWTC 5 cut(s) 167, 300, 652, 1033, 1585
Tru1I TTAA 5 cut(s) 201, 357, 678, 1560, 1599
Tru9I TTAA 5 cut(s) 201, 357, 678, 1560, 1599
TscAI CASTG 5 cut(s) 43, 448, 492, 1207, 1371
TseFI GTSAC 3 cut(s) 375, 553, 1297
TseI GCWGC 5 cut(s) 74, 236, 435, 438, 1094
Tsp45I GTSAC 3 cut(s) 375, 553, 1297
TspDTI ATGAA 5 cut(s) 114, 720, 915, 1382, 1451
TspGWI ACGGA 1 cut(s) 1059
TspRI CASTG 5 cut(s) 43, 448, 492, 1207, 1371
VpaK11BI GGWCC 1 cut(s) 1075
XapI RAATTY 4 cut(s) 197, 221, 1061, 1288
XbaI TCTAGA 1 cut(s) 1292
XceI RCATGY 5 cut(s) 142, 528, 542, 717, 781
XcmI CCANNNNNNNNNTGG 2 cut(s) 486, 1085
XmnI GAANNNNTTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.