Prupe.1G447900_v2.0.a1

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013356
Physical Location & Seq
Forward (+)
37837165 .. 37839053
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G447900.1

Sequence Viewer

Length: 1431 bp
ATGGATGGCCAACTTGGTGTAAATGGAGGAAATTTTCTGGTGCCCTGCTTGCTGGAACGGTTCCTTGAGGTGGGATCTGCGACGGAGAGTGAAGTGCCACTACAGGTTTGTTCTGTTAAAGCTGGAGGAATGATGTCTCTAGCCATTGATAATCTAGGTGGCCTTTGGATGTGGGGCAGTTGCCCACTAGAAAGCAGCAGCAATGAAGGTGGGTTCTCGCTTGTGAACAGTTTCACTCCAACCCCAGTGTGGGGTTTTTATGGCCATACTGTTGTGAAGGTGGCATGTGGAAATGAGCATGTTGTAGCCCTAGTTAGTGCTGGAGAAACATATAAAGGCGAAGATCTCGTTTGCTTCTCTTGGGGAGGTAACAACCATGGTCAGTTAGGCCTGGGGGATAAAGAGTACAGGAATCGTCCTGAAATTGTTGAAGCTTTTAACCAGGACTCTCCTTCCGCAGTTTATGAGGTAGCATGTGGGGCTTTTCACACGGCTTTGCTCACCCACAGAAAAAGGCCAAGTGACACATTAGAAAGCATGTGCTGGACGTTTGGCCTCGGAGAAAATGGGCAGCTTGGGCACGGAACCACCCAAAGTGTATTGTCTCCTGAACCTGTGAAAGAATTGCCACAATACATATATTTGGTGTCTGTCGACTGCGGCTTATTTCACACTAGTGTTGTTTCATCTGCTGGAGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGTCTATACCCAGATGCTAGTTATGCTGGGAGAGATACAGGGGATGCTGTGTCTCCTCTACAGATTAATGGATTGAATGGGCCTAGGTTTCAGGATCCGGTCCAAGTTGTTTGTGGAGCTGCTCATACTGTTCTTGTTGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGGAGTGGGGTTCTTGGAAATGGTAAGACGATTGACTGTTATGCTCCCACTGTTGTCTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATACTGCTGATAAGGAAGCTACAGCTACTATTGACGATGGAGATAAAATCGGGGAAAAGAATTCTACAGGAGACGCCGAAACAGAGAAAAGGCTGTCTTCGGCAATGAAAGAGATGAAGCTTCTTCAGTCAAAACTTTCAGTGATGGAGAAGTATGCTGGCATACTTCATGGCTCAATATTTGGAAAACCCATGGAAGAGCAGGATATTCCAGTCTCATTGCAGAACTCAGGTAGTTATGACATTACAAGGGAATGGGAGAACATGTTAGAGTCAGCAGATCGTGCCAAGCTCGTCAGGCTGGAAAAGTTCTACCGGAATATGCTTGCCGGTGTGAAAGATAAGCAAATGAAGAAACGGATTCAAGAGATGATAAAGGAATGCCTGAATTCTTCTACAATAAATAGAGGTAAGGGAGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

477

Amino Acids

51.75

Weight (kDa)

5.07

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 654
AciI CCGC 2 cut(s) 456, 660
AclWI GGATC 3 cut(s) 82, 818, 831
AcoI YGGCCR 2 cut(s) 7, 262
AcsI RAATTY 3 cut(s) 31, 1066, 1393
AcuI CTGAAG 1 cut(s) 1115
AcyI GRCGYC 1 cut(s) 1080
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 4 cut(s) 70, 249, 250, 251
AflIII ACRYGT 1 cut(s) 1269
AgsI TTSAA 4 cut(s) 431, 805, 991, 1370
AhlI ACTAGT 1 cut(s) 674
AjnI CCWGG 2 cut(s) 390, 441
AleI CACNNNNGTG 1 cut(s) 675
AluBI AGCT 9 cut(s) 122, 434, 574, 848, 886, 1025, 1031, 1126, 1297
AluI AGCT 9 cut(s) 122, 434, 574, 848, 886, 1025, 1031, 1126, 1297
Alw26I GTCTC 5 cut(s) 141, 609, 786, 1071, 1225
AlwI GGATC 3 cut(s) 82, 818, 831
AoxI GGCC 8 cut(s) 7, 160, 262, 388, 515, 553, 809, 968
ApeKI GCWGC 4 cut(s) 195, 198, 571, 848
ApoI RAATTY 3 cut(s) 31, 1066, 1393
AseI ATTAAT 1 cut(s) 795
Asp700I GAANNNNTTC 1 cut(s) 230
AspA2I CCTAGG 1 cut(s) 812
AspS9I GGNCC 2 cut(s) 809, 829
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 1 cut(s) 829
AvrII CCTAGG 1 cut(s) 812
BaeGI GKGCMC 2 cut(s) 45, 582
BalI TGGCCA 2 cut(s) 9, 264
BamHI GGATCC 1 cut(s) 823
BanI GGYRCC 1 cut(s) 40
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbsI GAAGAC 1 cut(s) 1095
BbvI GCAGC 4 cut(s) 207, 210, 583, 835
BccI CCATC 3 cut(s) 869, 1037, 1144
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 392, 443
BcoDI GTCTC 5 cut(s) 141, 609, 786, 1071, 1225
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 7 cut(s) 140, 155, 188, 311, 675, 747, 813
BfmI CTRYAG 4 cut(s) 101, 788, 1026, 1071
BglII AGATCT 1 cut(s) 343
BisI GCNGC 5 cut(s) 196, 199, 572, 661, 849
BlnI CCTAGG 1 cut(s) 812
BlsI GCNGC 5 cut(s) 197, 200, 573, 662, 850
Bme1390I CCNGG 2 cut(s) 392, 443
Bme18I GGWCC 1 cut(s) 829
BmgT120I GGNCC 2 cut(s) 809, 829
BmiI GGNNCC 4 cut(s) 42, 62, 586, 825
BmrFI CCNGG 2 cut(s) 392, 443
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 733, 763
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 1095
BpmI CTGGAG 3 cut(s) 144, 342, 714
BpuEI CTTGAG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 1080
BsaJI CCNNGG 5 cut(s) 376, 391, 556, 812, 1197
BsaWI WCCGGW 2 cut(s) 826, 1320
BsaXI ACNNNNNCTCC 2 cut(s) 1256, 1286
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 249, 250, 251
Bse118I RCCGGY 1 cut(s) 1334
Bse1I ACTGG 2 cut(s) 245, 1217
Bse3DI GCAATG 3 cut(s) 208, 1116, 1223
BseBI CCWGG 2 cut(s) 392, 443
BseDI CCNNGG 5 cut(s) 376, 391, 556, 812, 1197
BseGI GGATG 3 cut(s) 10, 174, 778
BseLI CCNNNNNNNGG 4 cut(s) 70, 249, 250, 251
BseMI GCAATG 3 cut(s) 208, 1116, 1223
BseMII CTCAG 1 cut(s) 1248
BseNI ACTGG 2 cut(s) 245, 1217
BseRI GAGGAG 1 cut(s) 774
BseSI GKGCMC 2 cut(s) 45, 582
BseXI GCAGC 4 cut(s) 207, 210, 583, 835
BseYI CCCAGC 1 cut(s) 755
BshFI GGCC 8 cut(s) 9, 162, 264, 390, 517, 555, 811, 970
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 3 cut(s) 827, 1321, 1335
BslI CCNNNNNNNGG 4 cut(s) 70, 249, 250, 251
BsmAI GTCTC 5 cut(s) 141, 609, 786, 1071, 1225
BsmBI CGTCTC 1 cut(s) 1071
BsmI GAATGC 1 cut(s) 1391
BsnI GGCC 8 cut(s) 9, 162, 264, 390, 517, 555, 811, 970
Bsp1286I GDGCHC 2 cut(s) 45, 582
Bsp143I GATC 4 cut(s) 74, 343, 823, 1285
Bsp19I CCATGG 2 cut(s) 376, 1197
BspACI CCGC 2 cut(s) 456, 660
BspANI GGCC 8 cut(s) 9, 162, 264, 390, 517, 555, 811, 970
BspCNI CTCAG 1 cut(s) 1247
BspLI GGNNCC 4 cut(s) 42, 62, 586, 825
BspPI GGATC 3 cut(s) 82, 818, 831
BspQI GCTCTTC 1 cut(s) 1197
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 3 cut(s) 208, 1116, 1223
BsrFI RCCGGY 1 cut(s) 1334
BsrI ACTGG 2 cut(s) 245, 1217
BssAI RCCGGY 1 cut(s) 1334
BssECI CCNNGG 5 cut(s) 376, 391, 556, 812, 1197
BssMI GATC 4 cut(s) 74, 343, 823, 1285
BssNI GRCGYC 1 cut(s) 1080
BssT1I CCWWGG 3 cut(s) 376, 812, 1197
Bst2UI CCWGG 2 cut(s) 392, 443
Bst4CI ACNGT 6 cut(s) 60, 230, 271, 859, 944, 958
Bst6I CTCTTC 1 cut(s) 1197
BstACI GRCGYC 1 cut(s) 1080
BstAPI GCANNNNNTGC 1 cut(s) 1289
BstC8I GCNNGC 3 cut(s) 50, 1165, 1332
BstDEI CTNAG 1 cut(s) 1234
BstDSI CCRYGG 2 cut(s) 376, 1197
BstF5I GGATG 3 cut(s) 10, 174, 778
BstKTI GATC 4 cut(s) 77, 346, 826, 1288
BstMAI GTCTC 5 cut(s) 141, 609, 786, 1071, 1225
BstMBI GATC 4 cut(s) 74, 343, 823, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 49, 479, 577, 752, 1289, 1303
BstNI CCWGG 2 cut(s) 392, 443
BstNSI RCATGY 5 cut(s) 288, 302, 477, 541, 1273
BstSCI CCNGG 2 cut(s) 390, 441
BstSFI CTRYAG 4 cut(s) 101, 788, 1026, 1071
BstSLI GKGCMC 2 cut(s) 45, 582
BstV1I GCAGC 4 cut(s) 207, 210, 583, 835
BstV2I GAAGAC 1 cut(s) 1095
BstX2I RGATCY 3 cut(s) 74, 343, 823
BstYI RGATCY 3 cut(s) 74, 343, 823
BsuRI GGCC 8 cut(s) 9, 162, 264, 390, 517, 555, 811, 970
BtgI CCRYGG 2 cut(s) 376, 1197
BtsCI GGATG 3 cut(s) 10, 174, 778
BtsIMutI CAGTG 3 cut(s) 252, 954, 1152
Cac8I GCNNGC 3 cut(s) 50, 1165, 1332
Cfr10I RCCGGY 1 cut(s) 1334
Cfr13I GGNCC 2 cut(s) 809, 829
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 9 cut(s) 285, 299, 377, 474, 538, 708, 1175, 1198, 1270
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 1234
DpnI GATC 4 cut(s) 76, 345, 825, 1287
DpnII GATC 4 cut(s) 74, 343, 823, 1285
EaeI YGGCCR 2 cut(s) 7, 262
Eam1104I CTCTTC 1 cut(s) 1197
EarI CTCTTC 1 cut(s) 1197
Eco130I CCWWGG 3 cut(s) 376, 812, 1197
Eco147I AGGCCT 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 829
Eco57I CTGAAG 1 cut(s) 1115
EcoRI GAATTC 2 cut(s) 1066, 1393
EcoRII CCWGG 2 cut(s) 390, 441
EcoT14I CCWWGG 3 cut(s) 376, 812, 1197
ErhI CCWWGG 3 cut(s) 376, 812, 1197
Esp3I CGTCTC 1 cut(s) 1071
FaeI CATG 9 cut(s) 288, 302, 380, 477, 541, 711, 1178, 1201, 1273
FalI AAGNNNNNCTT 2 cut(s) 1087, 1119
FatI CATG 9 cut(s) 284, 298, 376, 473, 537, 707, 1174, 1197, 1269
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 5 cut(s) 196, 199, 572, 661, 849
FokI GGATG 3 cut(s) 17, 181, 785
Fsp4HI GCNGC 5 cut(s) 196, 199, 572, 661, 849
FspBI CTAG 7 cut(s) 140, 155, 188, 311, 675, 747, 813
GluI GCNGC 5 cut(s) 196, 199, 572, 661, 849
GsaI CCCAGC 1 cut(s) 759
GsuI CTGGAG 3 cut(s) 144, 342, 714
HaeIII GGCC 8 cut(s) 9, 162, 264, 390, 517, 555, 811, 970
HapII CCGG 3 cut(s) 827, 1321, 1335
HgaI GACGC 1 cut(s) 1088
Hin1I GRCGYC 1 cut(s) 1080
Hin1II CATG 9 cut(s) 288, 302, 380, 477, 541, 711, 1178, 1201, 1273
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 3 cut(s) 432, 884, 1124
HinfI GANTC 4 cut(s) 412, 446, 1277, 1366
HpaII CCGG 3 cut(s) 827, 1321, 1335
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 226, 655
Hpy188I TCNGA 1 cut(s) 560
Hpy188III TCNNGA 4 cut(s) 419, 608, 821, 1370
Hpy8I GTNNAC 2 cut(s) 226, 655
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 5 cut(s) 200, 271, 462, 715, 900
HpyCH4III ACNGT 6 cut(s) 60, 230, 271, 859, 944, 958
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 2 cut(s) 869, 1228
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 479, 577, 752, 1289, 1303
HpyF3I CTNAG 1 cut(s) 1234
HpySE526I ACGT 1 cut(s) 548
Hsp92I GRCGYC 1 cut(s) 1080
Hsp92II CATG 9 cut(s) 288, 302, 380, 477, 541, 711, 1178, 1201, 1273
Kzo9I GATC 4 cut(s) 74, 343, 823, 1285
LguI GCTCTTC 1 cut(s) 1197
LmnI GCTCC 2 cut(s) 845, 955
Lsp1109I GCAGC 4 cut(s) 207, 210, 583, 835
LweI GCATC 2 cut(s) 733, 763
MaeI CTAG 7 cut(s) 140, 155, 188, 311, 675, 747, 813
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 368, 521
MalI GATC 4 cut(s) 76, 345, 825, 1287
MboI GATC 4 cut(s) 74, 343, 823, 1285
MboII GAAGA 7 cut(s) 353, 1010, 1095, 1121, 1214, 1369, 1389
MflI RGATCY 3 cut(s) 74, 343, 823
MhlI GDGCHC 2 cut(s) 45, 582
MlsI TGGCCA 2 cut(s) 9, 264
MluCI AATT 5 cut(s) 31, 423, 623, 1066, 1393
MluNI TGGCCA 2 cut(s) 9, 264
MlyI GAGTC 2 cut(s) 440, 1286
MmeI TCCRAC 1 cut(s) 263
Mox20I TGGCCA 2 cut(s) 9, 264
MroXI GAANNNNTTC 1 cut(s) 230
MscI TGGCCA 2 cut(s) 9, 264
MseI TTAA 3 cut(s) 117, 438, 795
MslI CAYNNNNRTG 1 cut(s) 675
Msp20I TGGCCA 2 cut(s) 9, 264
MspI CCGG 3 cut(s) 827, 1321, 1335
MspR9I CCNGG 2 cut(s) 392, 443
Mva1269I GAATGC 1 cut(s) 1391
MvaI CCWGG 2 cut(s) 392, 443
MwoI GCNNNNNNNGC 6 cut(s) 49, 479, 577, 752, 1289, 1303
NcoI CCATGG 2 cut(s) 376, 1197
NdeII GATC 4 cut(s) 74, 343, 823, 1285
NlaIII CATG 9 cut(s) 288, 302, 380, 477, 541, 711, 1178, 1201, 1273
NlaIV GGNNCC 4 cut(s) 42, 62, 586, 825
NmuCI GTSAC 1 cut(s) 521
NspI RCATGY 5 cut(s) 288, 302, 477, 541, 1273
OliI CACNNNNGTG 1 cut(s) 675
PceI AGGCCT 1 cut(s) 390
PciI ACATGT 1 cut(s) 1269
PciSI GCTCTTC 1 cut(s) 1197
PctI GAATGC 1 cut(s) 1391
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 412, 1366
PkrI GCNGC 5 cut(s) 197, 200, 573, 662, 850
PleI GAGTC 2 cut(s) 440, 1285
PpsI GAGTC 2 cut(s) 440, 1285
PscI ACATGT 1 cut(s) 1269
PshBI ATTAAT 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 390, 441
PspFI CCCAGC 1 cut(s) 755
PspGI CCWGG 2 cut(s) 390, 441
PspN4I GGNNCC 4 cut(s) 42, 62, 586, 825
PspPI GGNCC 2 cut(s) 809, 829
PsuI RGATCY 3 cut(s) 74, 343, 823
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 675
SalI GTCGAC 1 cut(s) 653
SapI GCTCTTC 1 cut(s) 1197
SaqAI TTAA 3 cut(s) 117, 438, 795
SatI GCNGC 5 cut(s) 196, 199, 572, 661, 849
Sau3AI GATC 4 cut(s) 74, 343, 823, 1285
Sau96I GGNCC 2 cut(s) 809, 829
SchI GAGTC 2 cut(s) 440, 1286
ScrFI CCNGG 2 cut(s) 392, 443
SduI GDGCHC 2 cut(s) 45, 582
SfaNI GCATC 2 cut(s) 733, 763
SfcI CTRYAG 4 cut(s) 101, 788, 1026, 1071
SinI GGWCC 1 cut(s) 829
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 674
Sse9I AATT 5 cut(s) 31, 423, 623, 1066, 1393
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 2 cut(s) 456, 660
SspI AATATT 1 cut(s) 1185
SspMI CTAG 7 cut(s) 140, 155, 188, 311, 675, 747, 813
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 390, 441
StyI CCWWGG 3 cut(s) 376, 812, 1197
TaaI ACNGT 6 cut(s) 60, 230, 271, 859, 944, 958
TaiI ACGT 1 cut(s) 551
TaqI TCGA 1 cut(s) 654
TasI AATT 5 cut(s) 31, 423, 623, 1066, 1393
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 2 cut(s) 412, 1366
Tru1I TTAA 3 cut(s) 117, 438, 795
Tru9I TTAA 3 cut(s) 117, 438, 795
TscAI CASTG 3 cut(s) 252, 961, 1152
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 4 cut(s) 195, 198, 571, 848
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 6 cut(s) 219, 675, 1127, 1136, 1163, 1370
TspGWI ACGGA 3 cut(s) 98, 597, 1378
TspRI CASTG 3 cut(s) 252, 961, 1152
VpaK11BI GGWCC 1 cut(s) 829
VspI ATTAAT 1 cut(s) 795
XapI RAATTY 3 cut(s) 31, 1066, 1393
XceI RCATGY 5 cut(s) 288, 302, 477, 541, 1273
XcmI CCANNNNNNNNNTGG 2 cut(s) 246, 839
XmaJI CCTAGG 1 cut(s) 812
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 7 cut(s) 140, 155, 188, 311, 675, 747, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.