Rorug06G0352100

ultraviolet-B receptor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
50114152 .. 50115533
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0352100.1

Sequence Viewer

Length: 1230 bp
ATGGCGCAGTCTTCCAAATTGGTGGAAGAGATGGTCGCACAATTCCTGTCGAGATTATCATCTAAAGCATTGATGCGATTCAAATGCATTCGTAAGTCGTGGTACAATCTTATAAATAGTCCAAGTTTCGTGGCCCAGAATCTTTTTAATTCCATGAACAACAAATTCACCTCTTCCACTTGCATCATTGCCAAGCATACTGTTCTTAAGGATAGTAGCATTACAGATAGGAATGAAATTTATGATATCCTTCAGTATGGAAACGATGATAAGAAGCAAATTTTTCTTTCATCACTTACTCTTTGCGACAATCTTGATGGTGATGACCAAGAGCTTTATTGTATTATTGAGGACGACCTTATTGTTCCTTTTCCTCTATGTAGAAAGTCCAATAATTTGTATATTGCAGGTCATTGTGATGGGATTATTTGTCTTAGTACATTTCTTTGCGATGATAGGGATATTGCTTTATGCAACCCTTCAATCAAGGAATTCAATCATCTTCCAAAATCCTGTATTCATCTCCCCCCTCAAGATGAAGATGATTATGTACATGAATGTAACGTGGGATTTGGCTATGATTCCAAAGCAAAGGTTTACAAGGTTGTTAGAATTGTCGATTTTTCTTCGTCACATCCTCCAAGAGTAGAGGTGTACACCTTAGGTGCAGATTGTTGGAGAGAGAACAAGGCATTTGTACTGGGAACTATCAGCAGCCCACGTTCTTTACATATGCACTTTAAGGGAATTTATTATTGGAGTGGGTTTAGTTATATTACGAGAGAGCTACAGTACGTCTTATTTGCATTCGACATGAGTGATGAGCTATTTTATTTGATATATCCACCGGAGGTTGCATTTGGAATTTACTTGAATCTTGCTATGTGGAAAGAATCCCTTCTTCTTATCACCCATAGAGAAGAAGCTCCTAAATGTTTTGATTTATGGCTAAATGAAGACTCTGATTTTTTGAAAGGTTCATGGACAAAATACTTCACTATCAAACCTATAGAAGCTTATATTCCGTTAGTATTTTGGAAAAGTAACGAGATTCTTATGGTGAATGTTGATCGACGTATAGTTTCCTATAACCTTGATACCCAAATGCTCAAGTGTCTTCCGATTCATGGAGCAGAAGATCCTTTATGTATTTATGCTATTAATTATGTAAATAGCATTATTTCAGTAAAGAGAAACAATAAACTCGAGTGCGTTGAAACTTATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

47.35

Weight (kDa)

5.53

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 131 - 381 2e-20 F-box associated beta propeller domain
FBA_3 PF08268 133 - 380 1.3e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013356)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 1133
AcsI RAATTY 6 cut(s) 164, 237, 279, 491, 747, 864
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 6 cut(s) 104, 439, 552, 656, 699, 794
AfiI CCNNNNNNNGG 1 cut(s) 1127
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 6 cut(s) 82, 483, 496, 874, 973, 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AluBI AGCT 5 cut(s) 334, 787, 826, 926, 1016
AluI AGCT 5 cut(s) 334, 787, 826, 926, 1016
AlwI GGATC 1 cut(s) 1133
Ama87I CYCGRG 1 cut(s) 1205
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 714
ApoI RAATTY 6 cut(s) 164, 237, 279, 491, 747, 864
AseI ATTAAT 1 cut(s) 1161
Asp700I GAANNNNTTC 1 cut(s) 897
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 4 cut(s) 160, 332, 901, 1072
AvaI CYCGRG 1 cut(s) 1205
AxyI CCTNAGG 1 cut(s) 661
BbsI GAAGAC 3 cut(s) 3, 963, 1109
BbvI GCAGC 1 cut(s) 726
BccI CCATC 3 cut(s) 25, 311, 413
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BfaI CTAG 1 cut(s) 1228
BfmI CTRYAG 2 cut(s) 788, 1008
BfrI CTTAAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 398
BisI GCNGC 1 cut(s) 715
BlsI GCNGC 1 cut(s) 716
BmeT110I CYCGRG 1 cut(s) 1205
BmgT120I GGNCC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 2 cut(s) 63, 192
BmuI ACTGGG 1 cut(s) 710
BpiI GAAGAC 3 cut(s) 3, 963, 1109
BpuEI CTTGAG 2 cut(s) 516, 1094
BsaBI GATNNNNATC 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 847
Bsc4I CCNNNNNNNGG 1 cut(s) 1127
Bse1I ACTGG 1 cut(s) 705
Bse21I CCTNAGG 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 58
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 1127
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 705
BseXI GCAGC 1 cut(s) 726
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 1205
BsiSI CCGG 1 cut(s) 848
BslI CCNNNNNNNGG 1 cut(s) 1127
BsmI GAATGC 2 cut(s) 87, 806
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 1205
Bsp1407I TGTACA 2 cut(s) 550, 654
Bsp143I GATC 2 cut(s) 1069, 1138
BspANI GGCC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 1133
BspTI CTTAAG 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 186
BsrGI TGTACA 2 cut(s) 550, 654
BsrI ACTGG 1 cut(s) 705
BssMI GATC 2 cut(s) 1069, 1138
Bst4CI ACNGT 2 cut(s) 202, 792
Bst6I CTCTTC 2 cut(s) 21, 178
BstAFI CTTAAG 1 cut(s) 206
BstAUI TGTACA 2 cut(s) 550, 654
BstDEI CTNAG 2 cut(s) 434, 661
BstF5I GGATG 1 cut(s) 634
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 1072, 1141
BstMBI GATC 2 cut(s) 1069, 1138
BstSFI CTRYAG 2 cut(s) 788, 1008
BstV1I GCAGC 1 cut(s) 726
BstV2I GAAGAC 3 cut(s) 3, 963, 1109
BstX2I RGATCY 1 cut(s) 1138
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 1 cut(s) 1138
Bsu36I CCTNAGG 1 cut(s) 661
BsuRI GGCC 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 634
BveI ACCTGC 1 cut(s) 398
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 6 cut(s) 103, 438, 551, 655, 698, 793
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 5 cut(s) 154, 554, 814, 981, 1127
CviJI RGCY 9 cut(s) 134, 334, 576, 717, 787, 826, 926, 949, 1016
CviKI_1 RGCY 9 cut(s) 134, 334, 576, 717, 787, 826, 926, 949, 1016
CviQI GTAC 6 cut(s) 103, 438, 551, 655, 698, 793
DdeI CTNAG 2 cut(s) 434, 661
DpnI GATC 2 cut(s) 1071, 1140
DpnII GATC 2 cut(s) 1069, 1138
Eam1104I CTCTTC 2 cut(s) 21, 178
EarI CTCTTC 2 cut(s) 21, 178
Eco32I GATATC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 661
Eco88I CYCGRG 1 cut(s) 1205
EcoRI GAATTC 1 cut(s) 491
EcoRV GATATC 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 89
FaeI CATG 5 cut(s) 157, 557, 817, 984, 1130
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FatI CATG 5 cut(s) 153, 553, 813, 980, 1126
FauNDI CATATG 1 cut(s) 732
Fnu4HI GCNGC 1 cut(s) 715
FokI GGATG 1 cut(s) 621
Fsp4HI GCNGC 1 cut(s) 715
FspBI CTAG 1 cut(s) 1228
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 715
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 848
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 157, 557, 817, 984, 1130
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 1014
HinfI GANTC 8 cut(s) 78, 139, 581, 874, 893, 959, 1051, 1123
HpaII CCGG 1 cut(s) 848
HphI GGTGA 4 cut(s) 160, 332, 901, 1072
Hpy166II GTNNAC 3 cut(s) 598, 655, 657
Hpy188I TCNGA 2 cut(s) 964, 1122
Hpy188III TCNNGA 3 cut(s) 51, 314, 533
Hpy8I GTNNAC 3 cut(s) 598, 655, 657
Hpy99I CGWCG 1 cut(s) 1077
HpyAV CCTTC 3 cut(s) 260, 489, 908
HpyCH4III ACNGT 2 cut(s) 202, 792
HpyCH4IV ACGT 4 cut(s) 564, 721, 795, 1075
HpyCH4V TGCA 8 cut(s) 87, 183, 407, 474, 668, 736, 806, 857
HpyF3I CTNAG 2 cut(s) 434, 661
HpySE526I ACGT 4 cut(s) 564, 721, 795, 1075
Hsp92II CATG 5 cut(s) 157, 557, 817, 984, 1130
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 1069, 1138
LmnI GCTCC 2 cut(s) 931, 1130
LpnPI CCDG 6 cut(s) 59, 149, 393, 526, 686, 861
Lsp1109I GCAGC 1 cut(s) 726
LweI GCATC 2 cut(s) 63, 192
MaeI CTAG 1 cut(s) 1228
MaeII ACGT 4 cut(s) 564, 721, 795, 1075
MaeIII GTNAC 3 cut(s) 560, 630, 1043
MalI GATC 2 cut(s) 1071, 1140
MboI GATC 2 cut(s) 1069, 1138
MflI RGATCY 1 cut(s) 1138
MlyI GAGTC 1 cut(s) 953
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 7 cut(s) 181, 343, 384, 540, 643, 648, 844
Mph1103I ATGCAT 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 4 cut(s) 147, 207, 741, 1161
MslI CAYNNNNRTG 1 cut(s) 417
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 848
Mva1269I GAATGC 2 cut(s) 87, 806
NdeI CATATG 1 cut(s) 732
NdeII GATC 2 cut(s) 1069, 1138
NlaIII CATG 5 cut(s) 157, 557, 817, 984, 1130
NmuCI GTSAC 1 cut(s) 630
NsiI ATGCAT 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 1205
PctI GAATGC 2 cut(s) 87, 806
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 7 cut(s) 78, 139, 581, 874, 893, 1051, 1123
PkrI GCNGC 1 cut(s) 716
PleI GAGTC 1 cut(s) 953
PpsI GAGTC 1 cut(s) 953
PshBI ATTAAT 1 cut(s) 1161
PsiI TTATAA 1 cut(s) 113
PspPI GGNCC 1 cut(s) 133
PspXI VCTCGAGB 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 1138
RsaI GTAC 6 cut(s) 104, 439, 552, 656, 699, 794
RsaNI GTAC 6 cut(s) 103, 438, 551, 655, 698, 793
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 4 cut(s) 147, 207, 741, 1161
SatI GCNGC 1 cut(s) 715
Sau3AI GATC 2 cut(s) 1069, 1138
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 953
SfaNI GCATC 2 cut(s) 63, 192
SfcI CTRYAG 2 cut(s) 788, 1008
Sfr274I CTCGAG 1 cut(s) 1205
SlaI CTCGAG 1 cut(s) 1205
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 4 cut(s) 206, 531, 1109, 1205
SmoI CTYRAG 4 cut(s) 206, 531, 1109, 1205
SspMI CTAG 1 cut(s) 1228
TaaI ACNGT 2 cut(s) 202, 792
TaiI ACGT 4 cut(s) 567, 724, 798, 1078
TaqI TCGA 5 cut(s) 50, 618, 810, 1072, 1206
TatI WGTACW 4 cut(s) 437, 550, 654, 697
TfiI GAWTC 7 cut(s) 78, 139, 581, 874, 893, 1051, 1123
Tru1I TTAA 4 cut(s) 147, 207, 741, 1161
Tru9I TTAA 4 cut(s) 147, 207, 741, 1161
TseFI GTSAC 1 cut(s) 630
TseI GCWGC 1 cut(s) 714
Tsp45I GTSAC 1 cut(s) 630
TspDTI ATGAA 9 cut(s) 170, 249, 279, 509, 552, 570, 969, 969, 1115
TspGWI ACGGA 1 cut(s) 1014
Vha464I CTTAAG 1 cut(s) 206
VspI ATTAAT 1 cut(s) 1161
XapI RAATTY 6 cut(s) 164, 237, 279, 491, 747, 864
XhoI CTCGAG 1 cut(s) 1205
XmnI GAANNNNTTC 1 cut(s) 897
XspI CTAG 1 cut(s) 1228
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.