Rorug06G0348700

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013356
Physical Location & Seq
Forward (+)
49893345 .. 49895095
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0348700.1

Sequence Viewer

Length: 954 bp
ATGGCTCGTTCAATCTCTCATTTTGTCAGTACTGCCTTCCTTGTTCTTGTTGCTTTGGATCTCTGCCTTGTTCATGAGGTCATAAGTCAGAGTCCCAACTGTTTGCCCCTCCCGAACGTGAATGATACTGACCGCCTTCAGTTTGCTTTGAACTTGGAATTCTTGGAGGCTGAGTTTTTCCTGTTTGGTGCTCTTGGAAGAGGGCTCGACAGTATCAGTCCAAATTTGGCCGGAGGTGGTCCGCCTCCTTCTGGTGCCCAGAAGGCGTTGCTCAACCCTGTTGTTGCTCGAATCATCGAGGAATTCGGTTATCAACAAGTTGGTCATATCAGAGCAATTATTGATGCAGTAGGAGGGATTCCGAGGCCTCTGTTAAACATCAGCCGCGAAAATTTTGCGAGAGGTTTTAACGGCATCGTGGGTTTCAACCTGATCCCTCCTTTTAATCCATATGCAAACACAGTCAAATTTCTTTTAGCAGCCTATTCAATCCCTTATATTGGAATAGGAGGCTATGTTGGTAGAATCCGTAACCTTACCACTGTTGCTGATCGCGCGCTGGCTGCTTCACTTTTGGGCGTTGTGGCTGGACAAGATGCGGTAATACGAACATTACTGTATACAAGAGCCAATCAATTTGTACCTCCGTATCCGCTCACAGTGGCCGAGTTCACAAATCGTATTTCAGCGCGTCGGAACTTCTTCGGCGGGTGTGGCAACAAAGACGAAGGTATCCTGTTACCAAACAACACGCTCGGGGCTGAGAACCGGACGACAAGTAACATCCTATCGGCGGATTTCAATTCGGGGTCGTATACCAGAACACCAGCTGAGATCTTGAGGATTGTGTATGGAGGCAATGAATCTGTGGCCGGCGGATTTTTCCCTCAAGGTGCTAATGGAAACATTGCAATGCGCTACCTCAACAATGGTACCGCCAGCTCAATAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

317

Amino Acids

33.9

Weight (kDa)

8.46

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 41 - 207 9.1e-30 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 932
AccB1I GGYRCC 2 cut(s) 254, 932
AccBSI CCGCTC 1 cut(s) 655
AccI GTMKAC 2 cut(s) 620, 815
AccII CGCG 4 cut(s) 387, 555, 557, 691
AciI CCGC 9 cut(s) 133, 242, 385, 599, 653, 708, 794, 876, 936
AclWI GGATC 2 cut(s) 66, 427
AcoI YGGCCR 3 cut(s) 228, 663, 870
AcsI RAATTY 5 cut(s) 158, 223, 302, 391, 467
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 3 cut(s) 31, 642, 934
AfiI CCNNNNNNNGG 3 cut(s) 251, 500, 793
AgsI TTSAA 5 cut(s) 12, 151, 427, 489, 802
AluBI AGCT 2 cut(s) 830, 942
AluI AGCT 2 cut(s) 830, 942
Alw21I GWGCWC 1 cut(s) 193
AlwI GGATC 2 cut(s) 66, 427
Ama87I CYCGRG 1 cut(s) 755
AoxI GGCC 4 cut(s) 228, 365, 663, 870
ApeKI GCWGC 2 cut(s) 479, 563
ApoI RAATTY 5 cut(s) 158, 223, 302, 391, 467
Asp700I GAANNNNTTC 1 cut(s) 701
Asp718I GGTACC 1 cut(s) 932
AspLEI GCGC 4 cut(s) 557, 559, 691, 918
AspS9I GGNCC 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 755
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 259
BaeI ACNNNNGTAYC 6 cut(s) 632, 665, 715, 748, 916, 949
BanI GGYRCC 2 cut(s) 254, 932
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 491, 550
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciVI GTATCC 2 cut(s) 660, 743
BfuI GTATCC 2 cut(s) 660, 743
BglI GCCNNNNNGGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 834
BisI GCNGC 3 cut(s) 385, 480, 564
BlsI GCNGC 3 cut(s) 386, 481, 565
BmcAI AGTACT 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 755
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 256, 934
BmsI GCATC 3 cut(s) 334, 423, 586
BpuEI CTTGAG 2 cut(s) 859, 873
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 768
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 501, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 500, 793
Bse118I RCCGGY 1 cut(s) 872
Bse3DI GCAATG 3 cut(s) 865, 906, 918
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 783
BseLI CCNNNNNNNGG 3 cut(s) 251, 500, 793
BseMI GCAATG 3 cut(s) 865, 906, 918
BseMII CTCAG 3 cut(s) 162, 753, 822
BsePI GCGCGC 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 2 cut(s) 491, 550
Bsh1236I CGCG 4 cut(s) 387, 555, 557, 691
BshFI GGCC 4 cut(s) 230, 367, 665, 872
BshNI GGYRCC 2 cut(s) 254, 932
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 3 cut(s) 231, 769, 873
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 251, 500, 793
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 4 cut(s) 230, 367, 665, 872
BsoBI CYCGRG 1 cut(s) 755
Bsp1286I GDGCHC 3 cut(s) 193, 207, 259
Bsp143I GATC 4 cut(s) 58, 432, 550, 834
BspACI CCGC 9 cut(s) 133, 242, 385, 599, 653, 708, 794, 876, 936
BspANI GGCC 4 cut(s) 230, 367, 665, 872
BspCNI CTCAG 3 cut(s) 163, 754, 823
BspFNI CGCG 4 cut(s) 387, 555, 557, 691
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 256, 934
BspPI GGATC 2 cut(s) 66, 427
BspT107I GGYRCC 2 cut(s) 254, 932
BsrBI CCGCTC 1 cut(s) 655
BsrDI GCAATG 3 cut(s) 865, 906, 918
BsrFI RCCGGY 1 cut(s) 872
BssAI RCCGGY 1 cut(s) 872
BssECI CCNNGG 1 cut(s) 362
BssHII GCGCGC 1 cut(s) 555
BssMI GATC 4 cut(s) 58, 432, 550, 834
BssNAI GTATAC 2 cut(s) 621, 816
Bst1107I GTATAC 2 cut(s) 621, 816
Bst4CI ACNGT 6 cut(s) 101, 212, 463, 544, 618, 661
Bst6I CTCTTC 1 cut(s) 193
BstC8I GCNNGC 4 cut(s) 557, 561, 874, 940
BstDEI CTNAG 3 cut(s) 171, 762, 831
BstF5I GGATG 1 cut(s) 783
BstFNI CGCG 4 cut(s) 387, 555, 557, 691
BstHHI GCGC 4 cut(s) 557, 559, 691, 918
BstKTI GATC 4 cut(s) 61, 435, 553, 837
BstMBI GATC 4 cut(s) 58, 432, 550, 834
BstMWI GCNNNNNNNGC 4 cut(s) 263, 554, 563, 714
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 4 cut(s) 387, 555, 557, 691
BstV1I GCAGC 2 cut(s) 491, 550
BstX2I RGATCY 2 cut(s) 58, 834
BstYI RGATCY 2 cut(s) 58, 834
BstZ17I GTATAC 2 cut(s) 621, 816
BsuI GTATCC 2 cut(s) 660, 743
BsuRI GGCC 4 cut(s) 230, 367, 665, 872
BtsCI GGATG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 540, 666
Cac8I GCNNGC 4 cut(s) 557, 561, 874, 940
CciI TCATGA 1 cut(s) 73
CfoI GCGC 4 cut(s) 557, 559, 691, 918
Cfr10I RCCGGY 1 cut(s) 872
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 680
Csp6I GTAC 3 cut(s) 30, 641, 933
CviAII CATG 1 cut(s) 74
CviQI GTAC 3 cut(s) 30, 641, 933
DdeI CTNAG 3 cut(s) 171, 762, 831
DpnI GATC 4 cut(s) 60, 434, 552, 836
DpnII GATC 4 cut(s) 58, 432, 550, 834
EaeI YGGCCR 3 cut(s) 228, 663, 870
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
EciI GGCGGA 3 cut(s) 231, 809, 891
Eco147I AGGCCT 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 755
EcoRI GAATTC 2 cut(s) 158, 302
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 1 cut(s) 77
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 73
FauI CCCGC 1 cut(s) 701
FauNDI CATATG 1 cut(s) 451
FblI GTMKAC 2 cut(s) 620, 815
Fnu4HI GCNGC 3 cut(s) 385, 480, 564
FokI GGATG 1 cut(s) 770
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 385, 480, 564
GlaI GCGC 4 cut(s) 556, 558, 690, 917
GluI GCNGC 3 cut(s) 385, 480, 564
HaeIII GGCC 4 cut(s) 230, 367, 665, 872
HapII CCGG 3 cut(s) 231, 769, 873
HgaI GACGC 1 cut(s) 680
HhaI GCGC 4 cut(s) 557, 559, 691, 918
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 4 cut(s) 555, 557, 689, 916
HinP1I GCGC 4 cut(s) 555, 557, 689, 916
HinfI GANTC 5 cut(s) 91, 291, 358, 525, 863
HpaII CCGG 3 cut(s) 231, 769, 873
Hpy166II GTNNAC 3 cut(s) 621, 672, 816
Hpy188I TCNGA 4 cut(s) 90, 332, 363, 696
Hpy188III TCNNGA 3 cut(s) 74, 112, 838
Hpy8I GTNNAC 3 cut(s) 621, 672, 816
Hpy99I CGWCG 1 cut(s) 696
HpyAV CCTTC 5 cut(s) 46, 146, 256, 258, 722
HpyCH4III ACNGT 6 cut(s) 101, 212, 463, 544, 618, 661
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 347, 455, 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 554, 563, 714
HpyF3I CTNAG 3 cut(s) 171, 762, 831
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 4 cut(s) 555, 557, 689, 916
KpnI GGTACC 1 cut(s) 936
KroI GCCGGC 1 cut(s) 872
KroNI GCCGGC 1 cut(s) 874
Kzo9I GATC 4 cut(s) 58, 432, 550, 834
Lsp1109I GCAGC 2 cut(s) 491, 550
LweI GCATC 3 cut(s) 334, 423, 586
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 3 cut(s) 530, 738, 779
MalI GATC 4 cut(s) 60, 434, 552, 836
MbiI CCGCTC 1 cut(s) 655
MboI GATC 4 cut(s) 58, 432, 550, 834
MboII GAAGA 2 cut(s) 210, 694
MflI RGATCY 2 cut(s) 58, 834
MhlI GDGCHC 3 cut(s) 193, 207, 259
MluCI AATT 8 cut(s) 158, 223, 302, 336, 391, 467, 635, 802
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 674
MroNI GCCGGC 1 cut(s) 872
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 3 cut(s) 374, 408, 444
MslI CAYNNNNRTG 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 3 cut(s) 231, 769, 873
MvnI CGCG 4 cut(s) 387, 555, 557, 691
MwoI GCNNNNNNNGC 4 cut(s) 263, 554, 563, 714
NaeI GCCGGC 1 cut(s) 874
NdeI CATATG 1 cut(s) 451
NdeII GATC 4 cut(s) 58, 432, 550, 834
NgoMIV GCCGGC 1 cut(s) 872
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 256, 934
NmeAIII GCCGAG 1 cut(s) 691
PagI TCATGA 1 cut(s) 73
PauI GCGCGC 1 cut(s) 555
PceI AGGCCT 1 cut(s) 367
PdiI GCCGGC 1 cut(s) 874
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 4 cut(s) 291, 358, 525, 863
PkrI GCNGC 3 cut(s) 386, 481, 565
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 256, 934
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 2 cut(s) 58, 834
PteI GCGCGC 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 3 cut(s) 31, 642, 934
RsaNI GTAC 3 cut(s) 30, 641, 933
RseI CAYNNNNRTG 1 cut(s) 911
SaqAI TTAA 3 cut(s) 374, 408, 444
SatI GCNGC 3 cut(s) 385, 480, 564
Sau3AI GATC 4 cut(s) 58, 432, 550, 834
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 3 cut(s) 193, 207, 259
SfaNI GCATC 3 cut(s) 334, 423, 586
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 2 cut(s) 838, 888
SmoI CTYRAG 2 cut(s) 838, 888
Sse9I AATT 8 cut(s) 158, 223, 302, 336, 391, 467, 635, 802
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 9 cut(s) 133, 242, 385, 599, 653, 708, 794, 876, 936
StuI AGGCCT 1 cut(s) 367
TaaI ACNGT 6 cut(s) 101, 212, 463, 544, 618, 661
TaiI ACGT 1 cut(s) 120
TaqI TCGA 3 cut(s) 207, 289, 297
TasI AATT 8 cut(s) 158, 223, 302, 336, 391, 467, 635, 802
TatI WGTACW 1 cut(s) 29
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 4 cut(s) 291, 358, 525, 863
Tru1I TTAA 3 cut(s) 374, 408, 444
Tru9I TTAA 3 cut(s) 374, 408, 444
TscAI CASTG 2 cut(s) 547, 666
TseI GCWGC 2 cut(s) 479, 563
TspDTI ATGAA 2 cut(s) 62, 876
TspGWI ACGGA 2 cut(s) 518, 636
TspRI CASTG 2 cut(s) 547, 666
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 5 cut(s) 158, 223, 302, 391, 467
XmiI GTMKAC 2 cut(s) 620, 815
XmnI GAANNNNTTC 1 cut(s) 701
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.