Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007321

Physical Location & Seq

Genomic Coordinates Reverse (-)

26327847 .. 26331036

Gene Structure 3190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35720.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGAGCTCTTGCAGTTTGAAATGCTCCACAAATCGACATGGGTTGGAGAACATAGATGAAAATGGTGGTACGAGTATTGGGGTAGCGGGTTTATGTGCCCCGCCTCCTGAAACTCCGACGGAGTCCATGGAGTTTCTGGCGAGATCATGGAGCCTTTCGGCTATGGAGATCTCCAAAGCTCTTTCTCACTCGCATGTTGCCTCTAAGAGTCTTGATCAGAATAAGTCGGCATTCTCTTATGACGGCGCTGCTGAAACTCGCCATTCAAGTTCCATACGTTTGAGCGAATCATCTCTACCTGGTGGAGTTAGCCCTCCGATTTCGCCAAGAAACAGTGATGAAATGAAGGAGTTGTTTTTACTACATCATGCACTTCATCCAGAGTTCCTTTCCACTCAACAACAATTGATCAATAATGGGCTATACAAGAGCATGTTGAGAGGGAAAACAATGGGGAGATGGTTAAAAGATCAAAAGGAGAGAAAGAAGCAGGAAATGAGAAGCCAAAATGCACAGTTGCATGCTGCAGTTTCTGTGGCTGGGGTGGCTGCTGCGGTAGCAGCTATCGCAGCTTCAACTGCATTGCCTGAAACTGAAACATTGGCTACCAGTGTCCACTACAAAACAGCAACATCCGAGAGGACTGAAATTTCGACAGCACTAGCATCTGCAGCTGCTCTAGTAGCTTCACGTTGTATCGAGATTGCAGAGGAGATGGGAGCTGATCATGACCATATTCTATCTGTTGTTAGTTCTGCTGTTAACGCGAGGACTAATGGAGACATCATGACCTTAACAGCCGGAGCTGCGACAGCTTTACGAGGAGCTGCTACACTCAAGATAAGGCTACAAAAGGAGTATGGAGGCACTACCTTTGCCCTGGCCGAGGAAAAATGTGAAGGAAAAGAATCAAACTCAGCACTGGACTTTGTCTCAAGAGGAGGGGAACTTCTCAAACGTACAAGGAAAGGTGATCTCCACTGGAAACAAGTTTCTTTCAACACCAACTCAAATGGGCAGGTTGTAGCTAAAATGAAAAGCAAGCACATGGTGGGAACATTTACAAAGAAGAAGAAATGTGTGGTCTCTGGAGTCTGCTGTGACATAACAGCATGGCCGGGAAGGGAGAGGGAAGATTGCAGCAATCCAAGGGCATACTTTGGCATCAAGACAGCTGACAGGACAATAGAATTTGAATGCAGAAGTAAAAGGGACAAGCATATGTGGACCGAGGGGATTCAGAATATGTTGAATCTCATACCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

423

Amino Acids

45.7

Weight (kDa)

8.81

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	2 - 177	1.6e-67	Auxin canalisation
PH_2	PF08458	202 - 246	4e-16	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32780 AT4G32780 AT4G32780
fragaria_vesca	FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720
malus_domestica	MD15G1094600.v1.1
prunus_persica	Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1
pyrus_communis	pycom15g08740
rosa_chinensis	RchiOBHm_Chr6g0306061
rosa_laevigata	RLG00000010827
rosa_multiflora	Rmu_sc0023505.1_g000002
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG458800 Rh6BG442000 Rh6CG473300 Rh6DG459600
rosa_wichuraiana	Rw6G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1009
AccII	CGCG	1 cut(s)	767
AciI	CCGC	3 cut(s)	86, 101, 554
AcoI	YGGCCR	2 cut(s)	882, 1115
AcsI	RAATTY	2 cut(s)	648, 1190
AdeI	CACNNNGTG	1 cut(s)	1051
AfaI	GTAC	2 cut(s)	70, 961
AfiI	CCNNNNNNNGG	1 cut(s)	886
AgsI	TTSAA	6 cut(s)	19, 267, 576, 1000, 1196, 1252
AjnI	CCWGG	2 cut(s)	298, 879
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	774, 937, 1090
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	882, 1115
ApoI	RAATTY	2 cut(s)	648, 1190
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	1227
AsuC2I	CCSGG	1 cut(s)	1119
AsuHPI	GGTGA	1 cut(s)	983
AvaII	GGWCC	1 cut(s)	1227
BaeGI	GKGCMC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	2 cut(s)	453, 709
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	300, 881
BclI	TGATCA	3 cut(s)	214, 408, 724
BcnI	CCSGG	1 cut(s)	1119
BcoDI	GTCTC	3 cut(s)	774, 937, 1090
BfaI	CTAG	2 cut(s)	662, 680
BfmI	CTRYAG	2 cut(s)	525, 669
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	168
Bme1390I	CCNGG	3 cut(s)	300, 881, 1119
Bme18I	GGWCC	1 cut(s)	1227
BmgT120I	GGNCC	1 cut(s)	1227
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	3 cut(s)	300, 881, 1119
BmsI	GCATC	2 cut(s)	674, 1173
BpmI	CTGGAG	1 cut(s)	1110
BpuEI	CTTGAG	2 cut(s)	821, 919
BpuMI	CCSGG	1 cut(s)	1119
BsaI	GGTCTC	1 cut(s)	1090
BsaJI	CCNNGG	5 cut(s)	126, 879, 885, 1148, 1230
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse1I	ACTGG	3 cut(s)	609, 927, 986
Bse3DI	GCAATG	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	300, 881
BseDI	CCNNGG	5 cut(s)	126, 879, 885, 1148, 1230
BseGI	GGATG	2 cut(s)	376, 632
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	930
BseNI	ACTGG	3 cut(s)	609, 927, 986
BseRI	GAGGAG	3 cut(s)	725, 837, 954
BseSI	GKGCMC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	2 cut(s)	884, 1117
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	801, 1118
BslFI	GGGAC	1 cut(s)	1226
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	3 cut(s)	774, 937, 1090
BsmFI	GGGAC	1 cut(s)	1226
BsmI	GAATGC	2 cut(s)	230, 1202
BsnI	GGCC	2 cut(s)	884, 1117
Bso31I	GGTCTC	1 cut(s)	1090
Bsp1286I	GDGCHC	2 cut(s)	8, 100
Bsp143I	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	3 cut(s)	86, 101, 554
BspANI	GGCC	2 cut(s)	884, 1117
BspCNI	CTCAG	1 cut(s)	929
BspFNI	CGCG	1 cut(s)	767
BspHI	TCATGA	2 cut(s)	727, 786
BspLI	GGNNCC	1 cut(s)	152
BspMAI	CTGCAG	2 cut(s)	529, 673
BspMI	ACCTGC	1 cut(s)	1009
BspTNI	GGTCTC	1 cut(s)	1090
BsrDI	GCAATG	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	609, 927, 986
BssECI	CCNNGG	5 cut(s)	126, 879, 885, 1148, 1230
BssMI	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
BssT1I	CCWWGG	2 cut(s)	126, 1148
Bst2UI	CCWGG	2 cut(s)	300, 881
Bst4CI	ACNGT	2 cut(s)	335, 516
BstC8I	GCNNGC	2 cut(s)	522, 1043
BstDEI	CTNAG	2 cut(s)	204, 916
BstDSI	CCRYGG	1 cut(s)	126
BstENI	CCTNNNNNAGG	1 cut(s)	884
BstF5I	GGATG	2 cut(s)	376, 632
BstFNI	CGCG	1 cut(s)	767
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	7 cut(s)	146, 171, 217, 411, 472, 727, 976
BstMAI	GTCTC	3 cut(s)	774, 937, 1090
BstMBI	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
BstNI	CCWGG	2 cut(s)	300, 881
BstNSI	RCATGY	3 cut(s)	197, 436, 524
BstSCI	CCNGG	3 cut(s)	298, 879, 1117
BstSFI	CTRYAG	2 cut(s)	525, 669
BstSLI	GKGCMC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	767
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	884, 1117
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	376, 632
BtsIMutI	CAGTG	4 cut(s)	340, 616, 920, 979
BveI	ACCTGC	1 cut(s)	1009
Cac8I	GCNNGC	2 cut(s)	522, 1043
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	2 cut(s)	727, 786
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	1227
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	69, 960
CviQI	GTAC	2 cut(s)	69, 960
DdeI	CTNAG	2 cut(s)	204, 916
DpnI	GATC	7 cut(s)	145, 170, 216, 410, 471, 726, 975
DpnII	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
DraIII	CACNNNGTG	1 cut(s)	1051
EaeI	YGGCCR	2 cut(s)	882, 1115
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	126, 1148
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	1090
Eco47I	GGWCC	1 cut(s)	1227
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	298, 879
EcoT14I	CCWWGG	2 cut(s)	126, 1148
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	126, 1148
FaqI	GGGAC	1 cut(s)	1226
FauI	CCCGC	2 cut(s)	79, 108
FauNDI	CATATG	1 cut(s)	1221
FbaI	TGATCA	3 cut(s)	214, 408, 724
FokI	GGATG	2 cut(s)	363, 619
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	662, 680
GlaI	GCGC	1 cut(s)	247
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	1110
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	884, 1117
HapII	CCGG	2 cut(s)	801, 1118
HhaI	GCGC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	7 cut(s)	122, 208, 287, 908, 1092, 1237, 1252
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	2 cut(s)	801, 1118
HphI	GGTGA	1 cut(s)	983
Hpy166II	GTNNAC	3 cut(s)	616, 763, 1227
Hpy188I	TCNGA	5 cut(s)	117, 219, 318, 637, 1242
Hpy8I	GTNNAC	3 cut(s)	616, 763, 1227
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	340, 893, 1116
HpyCH4III	ACNGT	2 cut(s)	335, 516
HpyCH4IV	ACGT	3 cut(s)	277, 691, 958
HpyF3I	CTNAG	2 cut(s)	204, 916
HpySE526I	ACGT	3 cut(s)	277, 691, 958
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	3 cut(s)	214, 408, 724
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
LmnI	GCTCC	5 cut(s)	29, 150, 719, 803, 824
LweI	GCATC	2 cut(s)	674, 1173
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	2 cut(s)	662, 680
MaeII	ACGT	3 cut(s)	277, 691, 958
MaeIII	GTNAC	1 cut(s)	1100
MalI	GATC	7 cut(s)	145, 170, 216, 410, 471, 726, 975
MboI	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
MboII	GAAGA	3 cut(s)	1081, 1084, 1145
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	8, 100
MluCI	AATT	3 cut(s)	404, 648, 1190
MlyI	GAGTC	3 cut(s)	131, 217, 1101
MmeI	TCCRAC	2 cut(s)	24, 140
MseI	TTAA	3 cut(s)	464, 762, 794
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	674, 1175
MspI	CCGG	2 cut(s)	801, 1118
MspR9I	CCNGG	3 cut(s)	300, 881, 1119
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	2 cut(s)	230, 1202
MvaI	CCWGG	2 cut(s)	300, 881
MvnI	CGCG	1 cut(s)	767
NciI	CCSGG	1 cut(s)	1119
NcoI	CCATGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	1221
NdeII	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
NlaIV	GGNNCC	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	910
NmuCI	GTSAC	1 cut(s)	1100
NspI	RCATGY	3 cut(s)	197, 436, 524
PaeI	GCATGC	1 cut(s)	524
PagI	TCATGA	2 cut(s)	727, 786
PctI	GAATGC	2 cut(s)	230, 1202
PfeI	GAWTC	4 cut(s)	287, 908, 1237, 1252
PflFI	GACNNNGTC	2 cut(s)	121, 929
PleI	GAGTC	3 cut(s)	130, 216, 1100
PpsI	GAGTC	3 cut(s)	130, 216, 1100
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	298, 879
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	2 cut(s)	298, 879
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	1227
PstI	CTGCAG	2 cut(s)	529, 673
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	168
PsyI	GACNNNGTC	2 cut(s)	121, 929
PvuII	CAGCTG	2 cut(s)	674, 1175
RsaI	GTAC	2 cut(s)	70, 961
RsaNI	GTAC	2 cut(s)	69, 960
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	464, 762, 794
Sau3AI	GATC	7 cut(s)	143, 168, 214, 408, 469, 724, 973
Sau96I	GGNCC	1 cut(s)	1227
SchI	GAGTC	3 cut(s)	131, 217, 1101
ScrFI	CCNGG	3 cut(s)	300, 881, 1119
SduI	GDGCHC	2 cut(s)	8, 100
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	674, 1173
SfcI	CTRYAG	2 cut(s)	525, 669
SinI	GGWCC	1 cut(s)	1227
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	836, 934
SmoI	CTYRAG	2 cut(s)	836, 934
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	3 cut(s)	404, 648, 1190
SsiI	CCGC	3 cut(s)	86, 101, 554
SspMI	CTAG	2 cut(s)	662, 680
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	298, 879, 1117
StyI	CCWWGG	2 cut(s)	126, 1148
TaaI	ACNGT	2 cut(s)	335, 516
TaiI	ACGT	3 cut(s)	280, 694, 961
TaqI	TCGA	3 cut(s)	34, 653, 699
TaqII	GACCGA	1 cut(s)	1244
TasI	AATT	3 cut(s)	404, 648, 1190
TfiI	GAWTC	4 cut(s)	287, 908, 1237, 1252
Tru1I	TTAA	3 cut(s)	464, 762, 794
Tru9I	TTAA	3 cut(s)	464, 762, 794
TscAI	CASTG	4 cut(s)	340, 616, 927, 986
TseFI	GTSAC	1 cut(s)	1100
Tsp45I	GTSAC	1 cut(s)	1100
TspDTI	ATGAA	5 cut(s)	72, 354, 359, 365, 1049
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	4 cut(s)	340, 616, 927, 986
Tth111I	GACNNNGTC	2 cut(s)	121, 929
VpaK11BI	GGWCC	1 cut(s)	1227
XagI	CCTNNNNNAGG	1 cut(s)	884
XapI	RAATTY	2 cut(s)	648, 1190
XceI	RCATGY	3 cut(s)	197, 436, 524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	662, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.